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Author SHA1 Message Date
Efraim Flashner 3e93b2bdeb
gnu: qt: Update to 5.12.4. 
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad,
qtscxml, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth,
qtremoteobjects, qtspeech): Update to 5.12.4.
(qt, qtbase)[source]: Remove xkbcommon from list of directories to remove.
(qtbase)[source]: Remove upstreamed patch.
(python-sip): Update to 4.19.18.
[source]: Update to new source uri.
(python-pyqt): Update to 5.12.3.
[source]: Update to new source uri.
* gnu/packages/patches/qtbase-old-kernel.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-08-29 11:35:39 +03:00
Rutger Helling 23cbc6b61e
gnu: libinput: Update to 1.14.0. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.14.0.
 2019-08-15 16:31:35 +02:00
Rutger Helling 47406a9290
gnu: mesa: Remove unnecessary inputs. 
* gnu/packages/gl.scm (mesa)[native-inputs]: Remove unnecessary inputs.
 2019-08-15 16:02:30 +02:00
Rutger Helling 7fe021b484
gnu: vulkan-headers: Update to 1.1.119. 
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.119.
[arguments]: Remove unnecessary phases.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
 2019-08-15 16:02:30 +02:00
Efraim Flashner 4585859f33
gnu: rust: Fix building. 
This is a follow-up to e07b04882a.

* gnu/packages/rust.scm (rust@1.19, rust@1.32)[arguments]: When using
functions from (guix build cargo-utils), make sure to include said
module in that build phase.
 2019-08-14 12:09:03 +03:00
Efraim Flashner e07b04882a
gnu: rust: Use 'generate-all-checksums'. 
* gnu/packages/rust.scm (rust@1.19)[arguments]: During custom
'patch-cargo-checksums phase, replace call to 'generate-checksums' with
call to 'generate-all-checksums'.
(rust@1.32)[arguments]: Same.
 2019-08-12 14:04:31 +03:00
Efraim Flashner e80a447976
gnu: gnuzilla: Use 'generate-all-checksums'. 
* gnu/packages/gnuzilla.scm (icecat)[arguments]: During custom
'patch-cargo-checksums phase, replace call to 'generate-checksums' with
call to 'generate-all-checksums'.
 2019-08-12 14:02:17 +03:00
Efraim Flashner 17c26b7ec5
build/cargo-build-system: Move generate-all-checksums to cargo-utils. 
* guix/build/cargo-build-system.scm (generate-all-checksums): Move
procedure ...
* guix/build/cargo-utils.scm: ... to here.
 2019-08-12 13:59:44 +03:00
Marius Bakke 5e5cdac0ae
Revert "gnu: python-packaging: Update to 19.1." 
The new version fails tests on architectures other than x86_64.

This reverts commit cb16a9fba9.
 2019-08-11 14:58:14 +02:00
Marius Bakke 36f400f616
Merge branch 'master' into staging 2019-08-08 18:14:45 +02:00
Marius Bakke ffc4869e45
gnu: ruby-pg: Update to 1.1.4. 
* gnu/packages/ruby.scm (ruby-pg): Update to 1.1.4.
[inputs]: Change from POSTGRESQL-9.6 to POSTGRESQL.
 2019-08-08 17:48:46 +02:00
Marius Bakke c96ec77198
gnu: exempi: Update home page. 
* gnu/packages/freedesktop.scm (exempi)[home-page]: Update to current.
 2019-08-08 17:48:46 +02:00
Marius Bakke 14b80bf6ca
gnu: postgresql@9: Update to 9.6.15 [fixes CVE-2019-10208]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.15.
 2019-08-08 17:48:46 +02:00
Marius Bakke cbfddc2f33
gnu: postgresql@11: Update to 11.5 [fixes CVE-2019-10208, CVE-2019-10209]. 
* gnu/packages/databases.scm (postgresql-11): Update to 11.5.
 2019-08-08 17:48:46 +02:00
Marius Bakke df3db97587
gnu: exempi: Update to 2.5.1. 
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.1.
 2019-08-08 17:48:45 +02:00
Marius Bakke bd12be346b
gnu: LibRaw: Update to 0.19.4. 
* gnu/packages/photo.scm (libraw): Update to 0.19.4.
 2019-08-08 17:48:45 +02:00
Marius Bakke c8f5827a56
gnu: postgresql: Udpate to 10.10 [fixes CVE-2019-10208]. 
* gnu/packages/databases.scm (postgresql): Update to 10.10.
 2019-08-08 17:32:18 +02:00
Ricardo Wurmus 7ef25083f0
gnu: r-modelr: Update to 0.1.5. 
* gnu/packages/cran.scm (r-modelr): Update to 0.1.5.
[propagated-inputs]: Remove r-lazyeval; add r-rlang.
 2019-08-08 17:20:46 +02:00
Ricardo Wurmus eb8963d989
gnu: r-quantreg: Update to 5.51. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.51.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus eaca771e88
gnu: r-knitr: Update to 1.24. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.24.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus 9649072cbd
gnu: r-markdown: Update to 1.1. 
* gnu/packages/statistics.scm (r-markdown): Update to 1.1.
[propagated-inputs]: Add r-xfun.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus d099499e0b
gnu: r-ggsignif: Update to 0.6.0. 
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.0.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus 90060e2071
gnu: r-hdf5array: Update to 1.12.2. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.2.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus a39f2e4cea
gnu: r-biocparallel: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.1.
 2019-08-08 16:47:02 +02:00
Marius Bakke ba73c434e0
gnu: ToME4: Disable parallel build. 
* gnu/packages/games.scm (tome4)[arguments]: Add <#:parallel-build?>.
 2019-08-08 16:45:14 +02:00
Efraim Flashner 1a069a170c
Revert "gnu: Add vcflib." 
This reverts commit 194e45f90a.

This commit does not have a good commit message, and it breaks master
 2019-08-08 15:34:05 +03:00
Efraim Flashner 6bc63fd8a7
Revert "gnu: Add freebayes." 
This reverts commit 173e046950.
 2019-08-08 15:32:51 +03:00
Pierre Neidhardt 173e046950
gnu: Add freebayes. 
* gnu/packages/bioinformatics.scm (freebayes): New variable.
 2019-08-08 15:18:34 +03:00
Pierre Neidhardt 194e45f90a
gnu: Add vcflib. 
* gnu/packages/bioinformatics.scm (vcflib): New variable.
 2019-08-08 15:18:33 +03:00
Pierre Neidhardt 7d71557d4d
gnu: Add fastahack. 
* gnu/packages/bioinformatics.scm (fastahack): New variable.
 2019-08-08 15:18:32 +03:00
Pierre Neidhardt 70782dddff
gnu: Add fsom. 
* gnu/packages/bioinformatics.scm (fsom): New variable.
 2019-08-08 15:18:31 +03:00
Pierre Neidhardt 8cd51276e5
gnu: Add multichoose. 
* gnu/packages/bioinformatics.scm (multichoose): New variable.
 2019-08-08 15:18:30 +03:00
Pierre Neidhardt 7faa70cf2b
gnu: Add smithwaterman. 
* gnu/packages/bioinformatics.scm (smithwaterman): New variable.
 2019-08-08 15:18:29 +03:00
Pierre Neidhardt 62a031afc4
gnu: Add tabixpp. 
* gnu/packages/bioinformatics.scm (tabixpp): New variable.
 2019-08-08 15:18:14 +03:00
Efraim Flashner 8378c87a59
gnu: Add network-manager-openconnect. 
* gnu/packages/gnome.scm (network-manager-openconnect): New variable.
 2019-08-08 10:08:00 +03:00
Robert Vollmert caa366ec23
gnu: ghc-trifecta: Disable tests. 
* gnu/packages/haskell.scm (ghc-trifecta)[arguments]: Disable tests.
 2019-08-07 22:05:34 -04:00
Robert Vollmert dbfaac113a
gnu: ghc-yaml: Disable tests. 
* gnu/packages/haskell.scm (ghc-yaml)[arguments]: Disable tests.
 2019-08-07 22:05:34 -04:00
Robert Vollmert 9ec2d6f84c
gnu: ghc-libmpd-haskell: Disable tests. 
* gnu/packages/haskell.scm (ghc-libmpd-haskell)[arguments]: Disable
tests.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 3755088b54
gnu: Remove ghc-packedstring. 
The package has no reverse dependencies and is deprecated upstream.

* gnu/packages/haskell.scm (ghc-packedstring): Remove variable.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 63edeca773
gnu: Remove ghc-haddock-test. 
The package doesn't build, has no reverse dependencies, and is
deprecated upstream.

* gnu/packages/haskell.scm (ghc-haddock-test): Remove variable.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 0d59302eba
gnu: Remove ghc-regex-tdfa-rc. 
The package doesn't build, has no reverse dependencies, and is deprecated
upstream.

* gnu/packages/haskell.scm (ghc-regex-tdfa-rc): Remove variable.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 8ede1021c8
gnu: Add ghc-snap-server. 
* gnu/packages/haskell-web.scm (ghc-snap-server): New variable.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 4f1793a2be
gnu: Add ghc-snap-core. 
* gnu/packages/haskell-web.scm (ghc-snap-core): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 4ccd679f25
gnu: Add ghc-http-streams. 
* gnu/packages/haskell-web.scm (ghc-http-streams): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 0173cdd31d
gnu: Add ghc-http-common. 
* gnu/packages/haskell-web.scm (ghc-http-common): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 4ba66e6f16
gnu: Add ghc-openssl-streams. 
* gnu/packages/haskell-crypto.scm (ghc-openssl-streams): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 0925b80409
gnu: Add ghc-hsopenssl. 
* gnu/packages/haskell-crypto.scm (ghc-hsopenssl): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 7b01a977e4
gnu: Add ghc-io-streams-haproxy. 
* gnu/packages/haskell-xyz.scm (ghc-io-streams-haproxy): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 658dbc7ff2
gnu: Add ghc-io-streams. 
* gnu/packages/haskell-xyz.scm (ghc-io-streams): New variable.
 2019-08-07 22:05:31 -04:00
Robert Vollmert 14e4199646
gnu: Add ghc-zlib-bindings. 
* gnu/packages/haskell-xyz.scm (ghc-zlib-bindings): New variable.
 2019-08-07 22:05:31 -04:00