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Author SHA1 Message Date
Ricardo Wurmus 3cc5c2b0cf
gnu: r-paws-database: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-database): Update to 0.5.0.

Change-Id: I80696e676c497b855ab3e71555d0e39204cda9e8
 2024-01-11 11:45:25 +01:00
Ricardo Wurmus d899677db1
gnu: r-paws-networking: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-networking): Update to 0.5.0.

Change-Id: Icc485caf75516157857a28b21e68bb269428a84d
 2024-01-11 11:45:25 +01:00
Ricardo Wurmus 510486547e
gnu: r-paws-management: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-management): Update to 0.5.0.

Change-Id: I65d0a7b11a4f81e55ed328290b17ec4498f996dc
 2024-01-11 11:45:25 +01:00
Ricardo Wurmus 07bdcaebbe
gnu: r-paws-machine-learning: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.5.0.

Change-Id: I4b5b281d41c161a9e3426d995f3b31fad8a24f84
 2024-01-11 11:45:24 +01:00
Ricardo Wurmus 2acbf9bd08
gnu: r-paws-analytics: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.5.0.

Change-Id: Ib57db7a535843486b520fd4c00d9288be2456860
 2024-01-11 11:45:24 +01:00
Ricardo Wurmus 11e9b45cd4
gnu: r-paws-security-identity: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-security-identity): Update to 0.5.0.

Change-Id: Ib2250b9ab5a2930b01196ea38954059fe541c867
 2024-01-11 11:45:24 +01:00
Ricardo Wurmus 81e46a98cf
gnu: r-paws-application-integration: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.5.0.

Change-Id: I31dd328a85ca54b92aa4e03a1bea6575ceaf7f64
 2024-01-11 11:45:24 +01:00
Ricardo Wurmus 35999bd7cf
gnu: r-paws-end-user-computing: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-end-user-computing): Update to 0.5.0.

Change-Id: I10f4569db639bc4fc9cd2404e9a4a6c67bd79ace
 2024-01-11 11:45:23 +01:00
Ricardo Wurmus 9caf82ceb3
gnu: r-paws-developer-tools: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-developer-tools): Update to 0.5.0.

Change-Id: Icd2ed6a90b8df01c57a8a9c41320020daaa86164
 2024-01-11 11:45:23 +01:00
Ricardo Wurmus 2aa8f2901a
gnu: r-paws-customer-engagement: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-customer-engagement): Update to 0.5.0.

Change-Id: Ibcde22d17c635d8bfed08bc0464d58be2e87646d
 2024-01-11 11:45:23 +01:00
Ricardo Wurmus c50cdf204f
gnu: r-paws-common: Update to 0.7.0. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.7.0.

Change-Id: I3eef5a808b6b0918ffa6b15a01f9d1937301b352
 2024-01-11 11:45:23 +01:00
Ricardo Wurmus 32ce535353
gnu: r-mlr3: Update to 0.17.2. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.17.2.

Change-Id: I873e6c338e99624750da248083b8c650772dc19d
 2024-01-11 11:45:22 +01:00
Ricardo Wurmus a08a55e6ac
gnu: r-stanheaders: Update to 2.32.5. 
* gnu/packages/cran.scm (r-stanheaders): Update to 2.32.5.

Change-Id: Ie2cccf037fe7c63d8b3574b1504b378f444fb6b3
 2024-01-11 11:45:22 +01:00
Ricardo Wurmus 51a6d1dd2f
gnu: r-patchwork: Update to 1.2.0. 
* gnu/packages/cran.scm (r-patchwork): Update to 1.2.0.

Change-Id: I10574362f942182b47d29d73747355cec2d7111a
 2024-01-11 11:45:22 +01:00
Ricardo Wurmus 309f042a29
gnu: r-gbm: Update to 2.1.9. 
* gnu/packages/cran.scm (r-gbm): Update to 2.1.9.

Change-Id: I2612b6656545b092e8d3ea17c6cf355f5aa0466f
 2024-01-11 11:45:22 +01:00
Ricardo Wurmus 7ed2a46a3d
gnu: r-yulab-utils: Update to 0.1.3. 
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.3.

Change-Id: Icac6a3048d7c1f6b2dc007027a2acfb34e927930
 2024-01-11 11:45:21 +01:00
Ricardo Wurmus 3f37d72acb
gnu: r-compositions: Update to 2.0-7. 
* gnu/packages/cran.scm (r-compositions): Update to 2.0-7.

Change-Id: I79365ad9f61257a1e8feb4697f51db9615845813
 2024-01-11 11:45:21 +01:00
Ricardo Wurmus 2e7f7b8a2f
gnu: r-targets: Update to 1.4.1. 
* gnu/packages/cran.scm (r-targets): Update to 1.4.1.

Change-Id: Ifc7b526b2f0b198875111a17568f40f660a1ac9d
 2024-01-11 11:45:21 +01:00
Ricardo Wurmus ab144d871b
gnu: r-tarchetypes: Update to 0.7.11. 
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.11.

Change-Id: Ia87abdf6690b3db8e43be009e8948777293f0ead
 2024-01-11 11:45:21 +01:00
Ricardo Wurmus 5a655bab8f
gnu: r-writexls: Update to 6.5.0. 
* gnu/packages/cran.scm (r-writexls): Update to 6.5.0.

Change-Id: I148760efa41cc8b4c6762638629f79296e61ca7a
 2024-01-11 11:45:20 +01:00
Ricardo Wurmus 10f25e5e73
gnu: r-ggrepel: Update to 0.9.5. 
* gnu/packages/cran.scm (r-ggrepel): Update to 0.9.5.

Change-Id: Ib87cbfacc9f3fce1d1e4bc0d9cbb0fb467522bfb
 2024-01-11 11:45:20 +01:00
Ricardo Wurmus b6b6465da3
gnu: r-rcpp: Update to 1.0.12. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.12.

Change-Id: Ia0e182858d8693d00d646bf4f4f38e064674f5bc
 2024-01-11 11:45:20 +01:00
Ricardo Wurmus 7e9cdd4a0b
gnu: r-glue: Update to 1.7.0. 
* gnu/packages/cran.scm (r-glue): Update to 1.7.0.

Change-Id: Ic843c657fe483c677af10b7a98bdb654d0441561
 2024-01-11 11:45:20 +01:00
Ricardo Wurmus 273ce26a8c
gnu: r-reprex: Update to 2.1.0. 
* gnu/packages/cran.scm (r-reprex): Update to 2.1.0.

Change-Id: I3c5e7f79cd7b6171ae9ec4562ce8866455f05ae6
 2024-01-11 11:45:19 +01:00
Ricardo Wurmus 16aa6d4fc3
gnu: r-astsa: Update to 2.1. 
* gnu/packages/cran.scm (r-astsa): Update to 2.1.

Change-Id: Ia3ceb05742c9acdd8fbb117f342d526bf7ee1bc1
 2024-01-11 11:45:19 +01:00
Ricardo Wurmus 2383da330d
gnu: r-ggpp: Update to 0.5.6. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.6.

Change-Id: Ib9a5bb2ff59381f301f481e189a196706cdbb928
 2024-01-11 11:45:19 +01:00
Ricardo Wurmus e007e93b63
gnu: r-zcompositions: Update to 1.5.0-1. 
* gnu/packages/cran.scm (r-zcompositions): Update to 1.5.0-1.

Change-Id: I472ebcf9f2d3f1d401f19b4a67b27bb892249cac
 2024-01-11 11:45:19 +01:00
Ricardo Wurmus 5d855222a4
gnu: r-castor: Update to 1.8.0. 
* gnu/packages/cran.scm (r-castor): Update to 1.8.0.
[propagated-inputs]: Add r-jsonlite.

Change-Id: I00ffcf5cbcd4badf644ec2572421c6df31792670
 2024-01-11 11:45:18 +01:00
Ricardo Wurmus 1f37c81400
gnu: r-rcurl: Update to 1.98-1.14. 
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.14.
[native-inputs]: Move libxml2 from here...
[inputs]: ...to here.

Change-Id: Ib1b3326a997c7f56053715682b43606b3153c140
 2024-01-11 11:44:33 +01:00
Ricardo Wurmus 1f452641c5
gnu: r-rstan: Update to 2.32.5. 
* gnu/packages/cran.scm (r-rstan): Update to 2.32.5.
[properties]: Tell updater to leave tzdata-for-tests.

Change-Id: I8a12fdea4a0197fae1610826be9ccb856c25afb7
 2024-01-11 11:43:51 +01:00
Ricardo Wurmus 10be2ba0e5
gnu: r-topicmodels: Update to 0.2-16. 
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-16.
[properties]: Tell updater not to remove GSL from inputs.

Change-Id: I7940d546af32240b3a45bc64f7b1b2361ea8bf0f
 2024-01-11 11:32:01 +01:00
Ricardo Wurmus 5e7d139461
gnu: r-rpostgresql: Update to 0.7-6. 
* gnu/packages/cran.scm (r-rpostgresql): Update to  0.7-6.
[properties]: Tell updater not to remove postgresql input.

Change-Id: Id88180f2781022b1554286f4beee85183ff474ac
 2024-01-11 11:18:06 +01:00
Ricardo Wurmus b52234c016
gnu: r-readr: Update to 2.1.5. 
* gnu/packages/statistics.scm (r-readr): Update to 2.1.5.

Change-Id: If3329e6b01db9fb457491ac44cdbbc97b0ec7c7c
 2024-01-11 11:15:18 +01:00
Ricardo Wurmus 6341dddcb9
gnu: python-afdko: Disable failing test. 
* gnu/packages/fontutils.scm (python-afdko)[arguments]: Disable
test_alt_missing_glyph.

Change-Id: I49f9d27f61955fe2bf9dd9d5cf22499e813ff3d0
 2024-01-11 08:09:38 +01:00
Ricardo Wurmus 3bf2465faa
gnu: openjdk11: Fix time bomb in ‘GenerateCurrencyData.java’. 
Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f424.

* gnu/packages/java.scm (openjdk11)[source]: Add patch.

Change-Id: I5ff53b8dd90598721a6c3814980c6553013b347c
 2024-01-10 22:26:23 +01:00
Ricardo Wurmus d255944400
gnu: openjdk10: Simplify. 
* gnu/packages/java.scm (openjdk10)[arguments]: Remove trailing #T from build
phase.

Change-Id: Icdb082b250704fe6de3a5e4323f29fa5db8446c7
 2024-01-10 22:10:15 +01:00
Ricardo Wurmus fc891f004a
gnu: openjdk10: Fix time bomb in ‘GenerateCurrencyData.java’. 
Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f424.

* gnu/packages/java.scm (openjdk10)[source]: Add patch.
* gnu/packages/patches/openjdk-currency-time-bomb2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I42fc14d305883f672cd6764a0ee6462852e41a5b
 2024-01-10 22:09:49 +01:00
Ricardo Wurmus a252ab6f88
gnu: Fix patch location. 
This is a follow-up to commit db7488a7fb.

* gnu/local.mk (dist_patch_DATA): Restore "packages/" prefix.

Change-Id: I1f8e420e75c3f4e1927dac935c2de337fd1306eb
 2024-01-10 22:07:57 +01:00
Ricardo Wurmus cf11f07588
gnu: openjdk9: Simplify. 
* gnu/packages/java.scm (openjdk9)[source]: Remove BEGIN.
[arguments]: Delete trailing #T from build phases.

Change-Id: If011dc595c1b9b0d79fd5bb727a8680d1ad4d100
 2024-01-10 21:54:16 +01:00
Ricardo Wurmus db7488a7fb
gnu: openjdk9: Fix time bomb in ‘GenerateCurrencyData.java’. 
Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f424.

* gnu/packages/java.scm (openjdk9)[source]: Add patch.
* gnu/packages/patches/openjdk-currency-time-bomb.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I45ca1fe5bad922307eba64d46a330a8f233c0f55
 2024-01-10 21:52:33 +01:00
Ricardo Wurmus 6c453e04b8
gnu: python-distributed: Disable breaking test. 
This test times out since the merge of the mesa-updates branch.

* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_tell_workers_when_peers_have_left.

Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
 2024-01-10 20:35:28 +01:00
nafkhamdc c1fda6cf61
gnu: Add r-jaspar2020. 
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable.

Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
 2024-01-10 18:39:13 +01:00
nafkhamdc feab3943c1
gnu: Add r-dsb. 
* gnu/packages/bioconductor.scm (r-dsb): New variable.

Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
 2024-01-10 18:39:13 +01:00
nafkhamdc db75afb4c5
gnu: r-signac: Update to 1.12.0-1.8ecdde2. 
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.12.0-1.8ecdde2.

Change-Id: Ib852f7a23768383fc62d60577f2aaa893c509317
 2024-01-10 18:39:13 +01:00
nafkhamdc 2ec29a8c11
gnu: Add r-escape. 
* gnu/packages/bioconductor.scm (r-escape): New variable.

Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
 2024-01-10 18:39:13 +01:00
Ricardo Wurmus 6688e9f4bd
gnu: Add python-telomerecat. 
* gnu/packages/bioinformatics.scm (python-telomerecat): New variable.

Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c
 2024-01-10 18:39:13 +01:00
Ricardo Wurmus 16a277e0a9
gnu: Add python-parabam. 
* gnu/packages/bioinformatics.scm (python-parabam): New variable.

Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b
 2024-01-10 18:39:13 +01:00
Ludovic Courtès 5c0f77f424
gnu: icedtea: Fix time bomb in ‘GenerateCurrencyData.java’. 
Fixes <https://issues.guix.gnu.org/68333>.

* gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’
parameter and honor it.
[native-inputs]: Add patch for “jdk-drop”.
(icedtea-8): Likewise.
* gnu/packages/patches/jdk-currency-time-bomb.patch,
gnu/packages/patches/jdk-currency-time-bomb2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8
 2024-01-10 16:42:03 +01:00
Zheng Junjie a126e8120d
gnu: mesa: Fix cross-compilation. 
* gnu/packages/gl.scm(mesa)[arguments]<#:phases>: When cross-compiling, force
the use of the cmake method to find llvm.

Change-Id: I27f6f4d9d71028c15588eeade48d3a918c042b9c
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-10 15:29:11 +01:00
Zheng Junjie 6401efb554
gnu: yaml-cpp: Update to 0.8.0. 
* gnu/packages/serialization.scm (yaml-cpp): Update to 0.8.0.

Change-Id: I927111f2d103dbb30ff336b64dd4ab90c22312a0
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2024-01-10 15:25:45 +01:00