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122791 commits

Author SHA1 Message Date
Ricardo Wurmus 362f3cdb8e
gnu: r-s4arrays: Update to 1.0.5.
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.5.
[propagated-inputs]: Add r-abind.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 790f0569f4
gnu: r-biocpkgtools: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.18.1.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 3602e0b41d
gnu: r-biocviews: Update to 1.68.2.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.68.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 55e0bd5c7a
gnu: r-flowworkspace: Update to 4.12.2.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.12.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus dc23a12566
gnu: r-rprotobuflib: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.12.1.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 5cc62530b9
gnu: r-ggcyto: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.28.1.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 36cf325b1e
gnu: r-flowcore: Update to 2.12.2.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.12.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus ceb698380c
gnu: r-ggtree: Update to 3.8.2.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.8.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 4998f1538b
gnu: r-treeio: Update to 1.24.3.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.3.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus b336a58135
gnu: r-matrixgenerics: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.3.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 59056368d0
gnu: r-diffbind: Update to 3.10.1.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.10.1.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 6346338d58
gnu: r-stringdb: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.12.1.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus ba4f688670
gnu: r-spectra: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.10.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus ce88bfafc3
gnu: r-raggedexperiment: Update to 1.24.2.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.24.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 8365b201f4
gnu: r-gsva: Update to 1.48.3.
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.48.3.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus dcc2d9a843
gnu: r-genomicfeatures: Update to 1.52.2.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus c5ce710a4a
gnu: r-genomeinfodb: Update to 1.36.2.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus eca138fd06
gnu: r-dittoseq: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.12.1.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus 00d8ba65aa
gnu: r-affy: Update to 1.78.2.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.2.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus d3bebefa9b
gnu: r-dmrcate: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.14.1.
[propagated-inputs]: Add r-biomart.
2023-08-28 22:15:47 +02:00
Ricardo Wurmus e868377a7d
gnu: r-densvis: Update to 1.10.3.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.3.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus d0f065d0b1
gnu: r-delayedarray: Update to 0.26.7.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.7.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 1119ecbd79
gnu: r-bambu: Update to 3.2.6.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.6.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 6c502065dc
gnu: r-anvil: Update to 1.12.4.
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.12.4.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 17c8517035
gnu: r-cytolib: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.12.1.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus ad05356b84
gnu: r-enrichplot: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.1.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 607214f953
gnu: r-lefser: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.10.1.
[propagated-inputs]: Add r-s4vectors.
2023-08-28 22:15:46 +02:00
Ricardo Wurmus 88f973a21b
gnu: r-rtracklayer: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.60.1.
[inputs]: Add openssl.
2023-08-28 22:15:46 +02:00
Nicolas Goaziou ea88bef3e0
gnu: texlive-texdoc: Fix script.
* gnu/packages/tex.scm (texlive-texdoc)[arguments]<#phases>: Prevent
a warning, and, more importantly, an error when using `texdoc' command.

Reported-by: Emmanuel Beffara <manu@beffara.org>
2023-08-28 19:50:17 +02:00
Ricardo Wurmus c8a642de9a
import-utils: Do not include punctuation when wrapping in @code{}.
* guix/import/utils.scm (beautify-description): Exclude punctuation.
* tests/import-utils.scm: Add new test.
2023-08-28 19:08:38 +02:00
Ricardo Wurmus b4c7fe02ae
gnu: Add r-lea.
* gnu/packages/bioconductor.scm (r-lea): New variable.
2023-08-28 18:06:50 +02:00
Ricardo Wurmus 28e9d08364
gnu: Add r-sesame.
* gnu/packages/bioconductor.scm (r-sesame): New variable.
2023-08-28 18:03:46 +02:00
Ricardo Wurmus 6b1946d2e2
gnu: Add r-sesamedata.
* gnu/packages/bioconductor.scm (r-sesamedata): New variable.
2023-08-28 18:03:28 +02:00
Ricardo Wurmus 72eecbffc6
gnu: Add r-enrichedheatmap.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): New variable.
2023-08-28 18:00:03 +02:00
Ricardo Wurmus 46e267c336
gnu: Add r-rdisop.
* gnu/packages/bioconductor.scm (r-rdisop): New variable.
2023-08-28 18:00:03 +02:00
Ricardo Wurmus 67f4383769
gnu: Add r-derfinder.
* gnu/packages/bioconductor.scm (r-derfinder): New variable.
2023-08-28 18:00:03 +02:00
Ricardo Wurmus 71a7dcb268
gnu: Add r-sangerseqr.
* gnu/packages/bioconductor.scm (r-sangerseqr): New variable.
2023-08-28 17:59:37 +02:00
Ricardo Wurmus 3e203183f8
gnu: Add r-rtcga.
* gnu/packages/bioconductor.scm (r-rtcga): New variable.
2023-08-28 17:59:37 +02:00
Ricardo Wurmus 3886a2b8b5
gnu: Add r-arrayqualitymetrics.
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): New variable.
2023-08-28 17:21:36 +02:00
Navid Afkhami 3350e871a8
gnu: Add r-classdiscovery.
* gnu/packages/bioconductor.scm (r-classdiscovery): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 99ed03843c
gnu: r-clubsandwich: Update to 0.5.10.
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.10.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 00cb411a0c
gnu: r-deoptimr: Update to 1.1-1.
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-1.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 8016c913b3
gnu: r-sfsmisc: Update to 1.1-16.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-16.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 47757d9f2b
gnu: r-biased-urn: Update to 2.0.11.
* gnu/packages/statistics.scm (r-biased-urn): Update to 2.0.11.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 6ba6b8da32
gnu: r-purrr: Update to 1.0.2.
* gnu/packages/statistics.scm (r-purrr): Update to 1.0.2.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 9692aa657b
gnu: r-viridis: Update to 0.6.4.
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.4.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 53fd472591
gnu: r-mvtnorm: Update to 1.2-3.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-3.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 130eae02a6
gnu: r-glmnet: Update to 4.1-8.
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-8.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus 1bed7fc281
gnu: r-rmarkdown: Update to 2.24.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.24.
[native-inputs]: Add esbuild.
2023-08-28 17:08:55 +02:00
Ricardo Wurmus e04fd37d35
gnu: r-rcpparmadillo: Update to 0.12.6.1.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.6.1.0.
2023-08-28 17:08:55 +02:00