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Author SHA1 Message Date
Oleg Pykhalov 693d0fffc8
gnu: Add sbcl-stumpwm-swm-gaps. 
* gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable.
 2020-04-27 22:21:35 +03:00
Vincent Legoll bb6d9e2633
gnu: tarsplitter: Fix typo in description (spilt/split). 
* gnu/packages/compression.scm (tarsplitter)[description]: Fix typo.
 2020-04-27 20:43:32 +02:00
TomZ f4f4aa628a
doc: guix: Fix grammar in "Debugging Build Failures" 
* doc/guix.texi (Debugging Build Failures): Fix grammar.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-04-27 18:24:19 +02:00
Alex McGrath 58a361fef4
gnu: Add wf-recorder. 
* gnu/packages/video.scm (wf-recorder): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-27 18:22:56 +02:00
Raghav Gururajan c53886a55a
gnu: ktsuss: Use setuid "su" and "sudo" commands. 
This has ktsudo actually gain root access.

* gnu/packages/admin.scm (ktsuss)[arguments]: Instead of <sudo>/bin/{su,sudo}
file names, use the setuid' verrsions.
 2020-04-27 18:17:24 +02:00
Boris A. Dekshteyn 138896e1ea
gnu: herbstluftwm: Update to 0.8.1 
* gnu/packages/wm.scm: herbstluftwm: Update to 0.8.1

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-04-27 18:05:11 +02:00
Guillaume Le Vaillant f38ba7b65d
gnu: fldigi: Update to 4.1.12. 
* gnu/packages/radio.scm (fldigi): Update to 4.1.12.
 2020-04-27 16:54:34 +02:00
Jakub Kądziołka 2ef4d273d1
file-systems: mount the PID cgroup filesystem. 
* gnu/system/file-systems.scm (%control-groups): Add "pids".
* gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO.

This has allowed me to make a specific configuration of nsjail work.
 2020-04-27 14:14:47 +02:00
Roel Janssen 639ae3f20b
gnu: Add python-scikit-rebate. 
* gnu/packages/machine-learning.scm (python-scikit-rebate): New variable.
 2020-04-27 13:54:43 +02:00
Roel Janssen ccf70a80a1
gnu: Add python-deeptools. 
* gnu/packages/bioinformatics.scm (python-deeptools): New variable.
 2020-04-27 13:43:05 +02:00
Roel Janssen c43edf6f30
gnu: Add python-deeptoolsintervals. 
* gnu/packages/bioinformatics.scm (python-deeptoolsintervals): New variable.
 2020-04-27 13:39:25 +02:00
Roel Janssen 4c24186ae0
gnu: Add python-bitarray. 
* gnu/packages/python-xyz.scm (python-bitarray): New variable.
 2020-04-27 13:09:02 +02:00
Roel Janssen 06fc1a5142
gnu: Add r-cummerbund. 
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
 2020-04-27 11:46:08 +02:00
Roel Janssen 91370829f4
gnu: Add r-inum. 
* gnu/packages/cran.scm (r-inum): New variable.
 2020-04-27 11:15:38 +02:00
Roel Janssen 415176e89d
gnu: Add r-ggpmisc. 
* gnu/packages/cran.scm (r-ggpmisc): New variable.
 2020-04-27 11:05:49 +02:00
Roel Janssen 0c0ef9c5a6
gnu: Add r-coverageview. 
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
 2020-04-27 10:57:22 +02:00
Ricardo Wurmus d4f86c8b66
gnu: Add peek. 
* gnu/packages/video.scm (peek): New variable.
 2020-04-27 10:46:12 +02:00
Ricardo Wurmus c170a15996
gnu: emacs-org-reveal: Fix syntax error in description. 
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[description]: Fix Texinfo
syntax error.
 2020-04-27 10:45:51 +02:00
Ricardo Wurmus 320dd1195e
gnu: Add texlive-inconsolata. 
* gnu/packages/tex.scm (texlive-inconsolata): New variable.
 2020-04-27 10:45:51 +02:00
Roel Janssen 8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
 2020-04-27 10:43:51 +02:00
Roel Janssen cb1ab0352b
gnu: Add r-karyoploter. 
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
 2020-04-27 10:37:42 +02:00
Roel Janssen e658838c62
gnu: Add r-bezier. 
* gnu/packages/cran.scm (r-bezier): New variable.
 2020-04-27 10:28:50 +02:00
Roel Janssen e8d435f7a2
gnu: Add r-ideoviz. 
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
 2020-04-27 10:24:20 +02:00
Roel Janssen df6c7f0487
gnu: Add r-ecp. 
* gnu/packages/cran.scm (r-ecp): New variable.
 2020-04-27 10:18:48 +02:00
Roel Janssen 8521d93854
gnu: Add r-reordercluster. 
* gnu/packages/cran.scm (r-reordercluster): New variable.
 2020-04-27 10:11:21 +02:00
Maxim Cournoyer 9c63165d9e
gnu: liblinphone: Move documentation and tester to separate outputs. 
* gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester"
outputs.
[phases]: Add a separate-outputs phase.  Move the
glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
 2020-04-27 00:54:44 -04:00
Maxim Cournoyer 1ae4325734
gnu: liblinphone: Fix the input type of some dependencies. 
Libraries being linked to such as libxml2, libiconv and zlib should appear as
'inputs' rather than 'native-inputs'.

* gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv,
libxml2 and zlib to...
[inputs]: ...here.  Move eudev, python-pystache and python-six to
native-inputs.
 2020-04-27 00:54:30 -04:00
Maxim Cournoyer 8472c26c25
gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs. 
Icon themes and theme engines are best left for the users to select and
install themselves.

* gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme.
[propagated-inputs]: Remove murrine.
 2020-04-27 00:54:30 -04:00
Brice Waegeneire 3b177a6c33
gnu: Add loadable module to wireguard-linux-compat. 
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace
'gnu-build-system' by 'linux-module-build-system'.
[outputs]: Add 'kernel-patch'.
[arguments]: Adjust the build system. Add phases 'change-directory' and
'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to
'install-patch'.
[description]: Mention the loadable module.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-26 18:24:28 -04:00
Ludovic Courtès ccbc427f9a
channels: Use a declarative profile. 
* guix/channels.scm (package-cache-file): Use 'profile' instead of
'profile-derivation'.
 2020-04-26 22:49:49 +02:00
Ludovic Courtès 0e5c2d5e14
services: system: Initial entries are non-monadic. 
* gnu/system.scm (operating-system-directory-base-entries): Return a
regular, non-monadic value.
* gnu/services.scm (system-derivation): Adjust accordingly.
* gnu/system/linux-container.scm (container-essential-services): Likewise.
 2020-04-26 22:49:49 +02:00
Ludovic Courtès 45c84c8f6f
pack: Use a declarative profile. 
* guix/scripts/pack.scm (guix-pack): Use a declarative profile instead
of 'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès 45bd91334f
services: profile: Use a declarative profile. 
* gnu/services.scm (packages->profile-entry): Use 'profile' instead of
'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès cda751105e
system: 'operating-system-directory-base-entries' uses 'profile'. 
* gnu/system.scm (operating-system-directory-base-entries): Use a
declarative profile instead of 'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès ef674a24c5
profiles: Add lowerable <profile> record type. 
* guix/profiles.scm (<profile>): New record type.
* tests/profiles.scm ("<profile>"): New test.
 2020-04-26 22:49:48 +02:00
Roel Janssen 1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description. 
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
 2020-04-26 21:47:19 +02:00
Roel Janssen 63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
 2020-04-26 21:34:49 +02:00
Maxim Cournoyer b58a22e5b7
gnu: Add hackneyed-x11-cursors. 
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
 2020-04-26 15:32:10 -04:00
Roel Janssen 886125d791
gnu: Add r-motifbreakr. 
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
 2020-04-26 21:24:03 +02:00
Roel Janssen 3699bcf54a
gnu: Add r-motifdb. 
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
 2020-04-26 21:07:45 +02:00
Roel Janssen ec20858a6a
gnu: Add r-pasilla. 
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
 2020-04-26 21:02:00 +02:00
Christopher Baines f476238431
gnu: guile3.0-chickadee: Rename to guile3.0-chickadee. 
This avoids having to packages, both called guile-chickadee.

* gnu/packages/game-development.scm (guile3.0-chickadee)[name]: Change from
guile-chickadee to guile3.0-chickadee.
 2020-04-26 19:44:33 +01:00
Christopher Baines 53aa66c3df
reconfigure: Don't call build-derivations for upgrade-services test 
This commit adjusts the upgrade-services system test to not build anything
when computing the derivation for the system test.  I came across this when
looking at issues computing the system test derivations to store in the Guix
Data Service.

* gnu/tests/reconfigure.scm (run-upgrade-services-test): Remove the use of,
and definition for ensure-service-file.
 2020-04-26 19:41:56 +01:00
Christopher Baines 928dc1bb1c
substitute: Close port at the end of http-multiple-get. 
* guix/scripts/substitute.scm (http-multiple-get): Add close-port call.
 2020-04-26 19:37:25 +01:00
Christopher Baines d5abb3049e
substitute: Make http-multiple-get batch size configurable. 
* guix/scripts/substitute.scm (http-multiple-get): Add batch-size parameter.
 2020-04-26 19:37:24 +01:00
Christopher Baines 121191f23a
substitute: Use the same port for multiple request batches. 
In http-multiple-get.

* guix/scripts/substitute.scm (http-multiple-get): Switch port to p in one
occurrence.
 2020-04-26 19:37:22 +01:00
Lars-Dominik Braun 910bf1f7a1
gnu: Add tarsplitter. 
* gnu/packages/compression.scm (tarsplitter): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 21:07:43 +03:00
Leo Famulari ca4b55882a
gnu: Add rav1e. 
* gnu/packages/video.scm (rav1e): New variable.
* gnu/packages/rust-apps.scm (rust-cbindgen-0.12, rust-cargo-c): New
variables.
* gnu/packages/crates-io.scm: Various new packages and upgrades.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 19:57:46 +03:00
Efraim Flashner ee8de73814
gnu: python-scanpy: Update to 1.4.6. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
 2020-04-26 15:03:50 +03:00
Marius Bakke 2b829898c7
gnu: python-publicsuffix2: Adjust for Guile 3.0. 
* gnu/packages/python-web.scm (python-publicsuffix2): Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:16 +02:00