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Author SHA1 Message Date
Christopher Howard 79c4fb4f36
gnu: Add hackrf. 
* gnu/packages/radio.scm (hackrf): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2020-04-28 10:17:08 +02:00
Roel Janssen 0ae8505288
gnu: hpcguix-web: Use guile3.0-guix. 
* gnu/packages/web.scm (hpcguix-web): Update to latest revision and use
  guile3.0 inputs.
 2020-04-28 10:13:30 +02:00
Konrad Hinsen d9e9a26176
gnu: python-scikit-learn: Make python-joblib a propagated input. 
* gnu/packages/machine-learning.scm (python-scikit-learn)
[native-inputs]: Move 'python-joblib' to ...
[propagated-inputs]: ... here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-28 09:34:29 +02:00
Ricardo Wurmus b3cf5f8601
gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef. 
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-2.cb227ef.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 0877b74f6e
gnu: kaldi: Update to 0-2.d4791c0. 
* gnu/packages/machine-learning.scm (kaldi): Update to 0-2.d4791c0.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 9c726c485a
gnu: r-hdf5array: Update to 1.14.4. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.4.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus cda0683295
gnu: r-seurat: Update to 3.1.5. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.5.
[propagated-inputs]: Remove r-metap.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus ed720abc26
gnu: r-topicmodels: Update to 0.2-11. 
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-11.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 1d9e71ed29
gnu: r-stopwords: Update to 2.0. 
* gnu/packages/cran.scm (r-stopwords): Update to 2.0.
[propagated-inputs]: Add r-desc and r-usethis.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 2c439cae92
gnu: r-fda: Update to 5.1.4. 
* gnu/packages/cran.scm (r-fda): Update to 5.1.4.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus e1fe5e9bed
gnu: r-abtest: Update to 0.2.1. 
* gnu/packages/cran.scm (r-abtest): Update to 0.2.1.
[propagated-inputs]: Add r-qgam; remove r-vgam.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus 169f9fe13a
gnu: Add r-qgam. 
* gnu/packages/cran.scm (r-qgam): New variable.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 5ffe706b84
gnu: r-systemfonts: Update to 0.2.0. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.0.
[inputs]: Remove freetype.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 8165bf6d90
gnu: r-dalex: Update to 1.2.0. 
* gnu/packages/cran.scm (r-dalex): Update to 1.2.0.
[propagated-inputs]: Add r-ibreakdown and r-ingredients.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 1816cb262c
gnu: r-rex: Update to 1.2.0. 
* gnu/packages/cran.scm (r-rex): Update to 1.2.0.
[propagated-inputs]: Remove r-magrittr.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 838ec254a0
gnu: r-optparse: Update to 1.6.6. 
* gnu/packages/cran.scm (r-optparse): Update to 1.6.6.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus bf4e440c19
gnu: r-sf: Update to 0.9-2. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-2.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 5123ec7858
gnu: r-future-apply: Update to 1.5.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.5.0.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus c6eb1fe616
gnu: r-etm: Update to 1.1. 
* gnu/packages/cran.scm (r-etm): Update to 1.1.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus fbcbf8d586
gnu: r-future: Update to 1.17.0. 
* gnu/packages/cran.scm (r-future): Update to 1.17.0.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus d62d838bf9
gnu: r-protviz: Update to 0.6.4. 
* gnu/packages/cran.scm (r-protviz): Update to 0.6.4.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 71c0a61cac
gnu: r-rgl: Update to 0.100.54. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.54.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus e2a50e5ec4
gnu: r-ggeffects: Update to 0.14.3. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.3.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 09410f17d2
gnu: r-bayestestr: Update to 0.6.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.6.0.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 27588b365f
gnu: r-emmeans: Update to 1.4.6. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.6.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus 09bb872aff
gnu: r-raster: Update to 3.1-5. 
* gnu/packages/cran.scm (r-raster): Update to 3.1-5.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus 35f84a7f27
gnu: r-insight: Update to 0.8.3. 
* gnu/packages/cran.scm (r-insight): Update to 0.8.3.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus f1f77bb64e
gnu: r-tinytex: Update to 0.22. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.22.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus e965442b38
gnu: r-tsp: Update to 1.1-10. 
* gnu/packages/cran.scm (r-tsp): Update to 1.1-10.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus 839c39b178
gnu: r-broom: Update to 0.5.6. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.6.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus 92d81a5e5b
gnu: r-distillery: Update to 1.0-7. 
* gnu/packages/cran.scm (r-distillery): Update to 1.0-7.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus 4c0cf66cfc
gnu: r-ff: Update to 2.2-14.2. 
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.2.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus d911e22af3
gnu: r-powerlaw: Update to 0.70.6. 
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.6.
[propagated-inputs]: Remove r-vgam; add r-pracma.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus 92f5ed2fd7
gnu: r-shinyfiles: Update to 0.8.0. 
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.8.0.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus 50f298a54f
gnu: Add r-ibreakdown. 
* gnu/packages/cran.scm (r-ibreakdown): New variable.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus befa394f45
gnu: Add r-ingredients. 
* gnu/packages/cran.scm (r-ingredients): New variable.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus d29cd83bd8
gnu: r-purrr: Update to 0.3.4. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.4.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus 0e3003930e
gnu: r-plotrix: Update to 3.7-8. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-8.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus 67aced6323
gnu: r-withr: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.2.0.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus 7ef5f77b91
gnu: r-xml2: Update to 1.3.2. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.2.
 2020-04-28 08:44:01 +02:00
Ricardo Wurmus 568d1d7bfc
gnu: r-dbplyr: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3.
[propagated-inputs]: Add r-lifecycle.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:01 +02:00
Ricardo Wurmus 666d97964a
gnu: r-tibble: Update to 3.0.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.1.
 2020-04-28 08:44:01 +02:00
Ricardo Wurmus 288ab9039b
gnu: r-foreign: Update to 0.8-78. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-78.
 2020-04-28 08:44:01 +02:00
Ricardo Wurmus c1dc7858d7
gnu: r-with-tests, r-minimal: Update to 4.0.0. 
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0.
(r-with-tests)[arguments]: Add phase "set-locales".
[native-inputs]: Add texlive-ae, texlive-inconsolata, and
texlive-latex-xkeyval to texlive-union.
[inputs]: Replace pcre with pcre2.
 2020-04-28 08:44:01 +02:00
Björn Höfling 89909327d0
gnu: stellarium: Update to 0.20.1. 
* gnu/packages/astronomy.scm (stellarium): Update to 0.20.1.
 2020-04-28 00:23:35 +02:00
operator.name 619f9181a3
doc: Update url to singularity before link rot occurs. 
* doc/guix.texi: Update url to singularity before link rot occurs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-27 23:29:40 +02:00
Raghav Gururajan 47f82b310e
guix: edit: Make nano the default editor. 
* guix/scripts/edit.scm: Make nano the default editor.

Nano is sensible default, as it is installed by base system.
For development, user can set custom value for $EDITOR.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-27 23:29:40 +02:00
Ludovic Courtès 5fbc753ab5
import: crate: Gracefully handle non-existent crates. 
Fixes <https://bugs.gnu.org/40891>.
Reported by Hartmut Goebel <h.goebel@crazy-compilers.com>.

* guix/import/crate.scm (crate->guix-package): Wrap value of
'version-number' and 'version*' in (and crate ...).
 2020-04-27 23:29:40 +02:00
Ludovic Courtès 5dfe02c607
tests: Remove trailing commas in JSON tests. 
These commas are rejected by Guile-JSON 3.5.0.

* tests/crate.scm (test-foo-dependencies)
(test-root-dependencies, test-intermediate-1-dependencies)
(test-intermediate-2-dependencies): Remove trailing commas.
* tests/gem.scm (test-bar-json): Likewise.
* tests/pypi.scm (test-json): Likewise.
 2020-04-27 23:29:40 +02:00
Roel Janssen 78799a6fdc
gnu: Update minimap2 to 2.17. 
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
 2020-04-27 21:34:10 +02:00