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Author SHA1 Message Date
Ludovic Courtès
2e3e5d2198
daemon: Invoke 'guix gc --list-busy' instead of 'list-runtime-roots'. 
* nix/scripts/list-runtime-roots.in: Remove.
* guix/store/roots.scm (%proc-directory): New variable.
(proc-file-roots, proc-exe-roots, proc-cwd-roots)
(proc-fd-roots, proc-maps-roots, proc-environ-roots)
(referenced-files, canonicalize-store-item, busy-store-items): New
procedures, taken from 'list-runtime-roots.in'.
* nix/libstore/globals.hh (Settings)[guixProgram]: New field.
* nix/libstore/globals.cc (Settings::processEnvironment): Initialize
'guixProgram'.
* nix/libstore/gc.cc (addAdditionalRoots): Drop code related to
'NIX_ROOT_FINDER'.  Run "guix gc --list-busy".
* nix/local.mk (nodist_pkglibexec_SCRIPTS): Remove
'scripts/list-runtime-roots'.
* config-daemon.ac: Don't output nix/scripts/list-runtime-roots.
* build-aux/pre-inst-env.in: Don't set 'NIX_ROOT_FINDER'.
Set 'GUIX'.
* doc/guix.texi (Invoking guix gc): Document '--list-busy'.
* guix/scripts/gc.scm (show-help, %options): Add "--list-busy".
(guix-gc)[list-busy]: New procedure.
Handle the 'list-busy' action.
 2019-09-08 11:49:24 +02:00
raingloom
7fcc2f9355
gnu: Add fmit. 
* gnu/packages/music.scm (fmit): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2019-09-08 11:08:46 +02:00
Efraim Flashner
799d8d3ca6
gnu: haskell-xyz.scm: Correctly hide packages. 
* gnu/packages/haskell-xyz.scm (ghc-attoparsec-bootstrap,
ghc-integer-logarithms-bootstrap, ghc-scientific-bootstrap,
ghc-semigroups-bootstrap, ghc-unordered-containers-bootstrap,
ghc-wcwidth-bootstrap)[properties]: Fix typo, make 'hidden?' a tuple.
 2019-09-08 11:18:39 +03:00
Ricardo Wurmus
e0819e5ca2
gnu: Add emacs-tao-theme. 
* gnu/packages/emacs-xyz.scm (emacs-tao-theme): New variable.
 2019-09-08 09:27:26 +02:00
Vagrant Cascadian
bc5aa38667
gnu: Add odt2txt. 
* gnu/packages/textutils (odt2txt): New variable.
* gnu/packages/package-management (diffoscope)[native-inputs]: Add odt2txt.
  [use-modules]: Remove accidentally added libreoffice package module.
 2019-09-08 00:21:21 -07:00
Vagrant Cascadian
d54ca1cd4d
gnu: Add sng. 
* gnu/packages/images (sng): New variable.
* gnu/packages/package-management (diffoscope)[native-inputs]: Add sng.
 2019-09-07 23:44:04 -07:00
Vagrant Cascadian
68fea604b0
gnu: Add pngsuite. 
* gnu/packages/image (pngsuite): New variable.
 2019-09-07 23:44:01 -07:00
Vagrant Cascadian
37ecf2d905
gnu: diffoscope: Enable even more tests. 
* gnu/packages/package-management (diffoscope)[native-inputs]: Add additional
  dependencies for tests.
  [use-module]: Add corresponding package modules.
 2019-09-07 20:28:48 -07:00
Vagrant Cascadian
3dd20da0cb
gnu: diffoscope: Enable additional tests. 
* gnu/packages/package-management (diffoscope) [native-inputs]: Add additional
  packages used for tests.
 2019-09-07 20:28:35 -07:00
Vagrant Cascadian
3ec8c0ca94
gnu: diffoscope: Update to 123. 
* gnu/packages/package-management (diffoscope): Update to 123.
  [arguments]: Update phase writable-test-data to include tests directory.
    Add phase remove-ocaml-test.
 2019-09-07 20:28:18 -07:00
Vagrant Cascadian
9f74bd317f
gnu: python-debian: Update to 0.1.36. 
* gnu/packages/python-xyz (python-debian): Update to 0.1.36.
  [source]: Switch to using git-fetch.
  [arguments]: Add phase to delete tests depending on tools not yet present in
  guix.
  [propagated-inputs]: Add python-chardet.
 2019-09-07 20:27:34 -07:00
Ricardo Wurmus
f791b1eecc
gnu: r-rsubread: Update to 1.34.7. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.7.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
a39222d7e2
gnu: r-regioner: Update to 1.16.3. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.3.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
d40ebbf228
gnu: r-gprofiler: Update to 0.6.8. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.8.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
8e70b33c56
gnu: r-annotationhub: Update to 2.16.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.1.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
f70599cb78
gnu: r-edger: Update to 3.26.8. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.8.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
801dc98f1f
gnu: r-ggraph: Update to 2.0.0. 
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.0.
[propagated-inputs]: Add r-graphlayouts, r-rlang, and r-tidygraph; remove
r-plyr.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
995a20e892
gnu: r-msigdbr: Update to 7.0.1. 
* gnu/packages/cran.scm (r-msigdbr): Update to 7.0.1.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
f396d343b7
gnu: r-ggeffects: Update to 0.12.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.12.0.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
9a4706828c
gnu: r-ggformula: Update to 0.9.2. 
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.2.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
c90eebf791
gnu: r-insight: Update to 0.5.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.5.0.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus
f11920c759
gnu: r-ggpubr: Update to 0.2.3. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.3.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
9960ad55be
gnu: r-geometry: Update to 0.4.4. 
* gnu/packages/cran.scm (r-geometry): Update to 0.4.4.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
02efab6917
gnu: r-feather: Update to 0.3.4. 
* gnu/packages/cran.scm (r-feather): Update to 0.3.4.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
5e7c6e54c8
gnu: r-matrixstats: Update to 0.55.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.55.0.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
de162a1509
gnu: r-rcpparmadillo: Update to 0.9.700.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.700.2.0.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
2b705168e9
gnu: r-devtools: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.2.0.
[propagated-inputs]: Add r-covr, r-crayon, r-desc, r-dt, r-ellipsis, r-glue,
and r-rversions.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
e5cf3722c6
gnu: r-gdtools: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.0.
[inputs]: Add freetype.
[propagated-inputs]: Add r-systemfonts; remove r-withr.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
9567bd8dd9
gnu: Add r-tidygraph. 
* gnu/packages/cran.scm (r-tidygraph): New variable.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
9390300915
gnu: Add r-graphlayouts. 
* gnu/packages/cran.scm (r-graphlayouts): New variable.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
6983178b06
gnu: Add r-systemfonts. 
* gnu/packages/cran.scm (r-systemfonts): New variable.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus
7a5ed348c0
gnu: Add r-covr. 
* gnu/packages/cran.scm (r-covr): New variable.
 2019-09-08 00:30:32 +02:00
Julien Lepiller
1d03a9198d
tests: opam: Fix input type in import test. 
* tests/opam.scm: Expect propagated-inputs instead of inputs.
 2019-09-07 22:25:14 +02:00
Arun Isaac
9d280ef2a8
gnu: poussetaches: Update to 0.0.2. 
* gnu/packages/web.scm (poussetaches): Update to 0.0.2.
 2019-09-08 00:02:59 +05:30
Julien Lepiller
e877f4d012
gnu: nml: Fix for newer pillow version. 
* gnu/packages/game-development.scm (nml)[arguments]: Add a phase to fix
for newer pillow.
 2019-09-07 20:14:50 +02:00
Ludovic Courtès
8ba31e8bd1
doc: Use @lisp instead of @example for Scheme snippets. 
This is a followup to f8c143a713, which
allows syntax highlighting of @lisp snippets in the HTML output.

* doc/guix.texi, doc/contributing.texi: Use @lisp instead of @example
for all the Scheme snippets.
 2019-09-07 18:42:08 +02:00
Ludovic Courtès
7854bbeb3f
doc: Work around (htmlprag) parser issue. 
* doc/build.scm (guile-lib/htmlprag-fixed): New variable.
(syntax-highlighted-html): Use it instead of GUILE-LIB.
 2019-09-07 18:42:08 +02:00
Kei Kebreau
c3a7dae831
gnu: qtermwidget: Enable UTF-8 support. 
* gnu/packages/lxqt.scm (qtermwidget)[inputs]: Add utf8proc.
 2019-09-07 09:17:34 -04:00
Rutger Helling
08b3521000
gnu: wireguard: Update to 0.0.20190905. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190905.
 2019-09-07 11:16:24 +02:00
Mark H Weaver
f66aee3d0d
gnu: linux-libre: Update to 5.2.13. 
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.13.
(linux-libre-5.2-pristine-source): Update hash.
 2019-09-06 20:42:05 -04:00
Mark H Weaver
a6ec7eba26
gnu: linux-libre@4.14: Update to 4.19.71. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.71.
(linux-libre-4.19-pristine-source): Update hash.
 2019-09-06 20:41:23 -04:00
Mark H Weaver
d45f5c40a2
gnu: linux-libre@4.14: Update to 4.14.142. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.142.
(linux-libre-4.14-pristine-source): Update hash.
 2019-09-06 20:40:18 -04:00
Mark H Weaver
67ad69b768
gnu: linux-libre@4.9: Update to 4.9.191. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.191.
(linux-libre-4.9-pristine-source): Update hash.
 2019-09-06 20:39:13 -04:00
Mark H Weaver
be0fb599e7
gnu: linux-libre@4.4: Update to 4.4.191. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.191.
(linux-libre-4.4-pristine-source): Update hash.
 2019-09-06 20:38:06 -04:00
Mark H Weaver
3fe53f49a7
Revert "services: Add ‘/usr/bin/env’ special file." 
This reverts commit 3b38bf141a.

The Guix project discussed this years ago and decided against including
/usr/bin/env.  That decision should not be reversed without a wider
discussion.
 2019-09-06 19:35:08 -04:00
Ricardo Wurmus
a35f153d54
gnu: python-scipy: Update to 1.3.1. 
* gnu/packages/python-xyz.scm (python-scipy): Update to 1.3.1.
(python2-scipy): Keep at version 1.2.2.
 2019-09-07 00:48:12 +02:00
L p R n d n
8cc5d3dc4d
gnu: xfce4-panel: Fix tzdata path. 
* gnu/packages/xfce.scm (xfce4-panel)[inputs]: Add tzdata.
[arguments] Add Fix-tzdata-path phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00
L p R n d n
64200f0197
gnu: libxfce4ui: Add vendor. 
* gnu/packages/xfce.scm (libxfce4ui)[arguments]: Add #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00
L p R n d n
48af935672
gnu: libxfce4ui: Add gobject-introspection support. 
* gnu/packages/xfce.scm (libxfce4ui): Add gobject-introspection to native-inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00
L p R n d n
279b5730d4
gnu: xfconf: Fix tests. 
* gnu/packages/xfce.scm (xfconf)[arguments]: Rename check phase to
  custom-check.
  [native-inputs]: Add dbus.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00