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Author SHA1 Message Date
Mădălin Ionel Patrașcu 2d9c6542c8
gnu: mafft: Update to 7.475. 
* gnu/packages/bioinformatics.scm (mafft): Update to 7.475.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-01-18 11:57:28 +02:00
Vincent Legoll 973a1e5272
gnu: musl: Update to 1.2.2. 
* gnu/packages/musl.scm (musl): Update to 1.2.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-01-18 11:54:37 +02:00
Efraim Flashner 6cb86e23a9
gnu: ruby-bio-vcf: Rename to bio-vcf. 
This package is widely known in select circles specifically as 'bio-vcf'.

* gnu/packages/bioinformatics.scm (ruby-bio-vcf): Rename to bio-vcf.
 2021-01-18 11:19:37 +02:00
Efraim Flashner 9b6cddd32d
gnu: Add ruby-bio-vcf. 
* gnu/packages/bioinformatics.scm (ruby-bio-vcf): New variable.
 2021-01-18 10:41:46 +02:00
Leo Famulari c20eee77a1
gnu: linux-libre 4.4: Update to 4.4.252. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.252.
(linux-libre-4.4-pristine-source): Update hash.
 2021-01-18 02:42:21 -05:00
Leo Famulari 2c0f457968
gnu: linux-libre 4.9: Update to 4.9.252. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.252.
(linux-libre-4.9-pristine-source): Update hash.
 2021-01-18 02:42:20 -05:00
Leo Famulari 83c99f3767
gnu: linux-libre 4.14: Update to 4.14.216. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.216.
(linux-libre-4.14-pristine-source): Update hash.
 2021-01-18 02:42:20 -05:00
Leo Famulari 7cd85dae00
gnu: linux-libre 4.19: Update to 4.19.168. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.168.
(linux-libre-4.19-pristine-source): Update hash.
 2021-01-18 02:42:20 -05:00
Leo Famulari 5a748524ee
gnu: linux-libre 5.4: Update to 5.4.90. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.90.
(linux-libre-5.4-pristine-source): Update hash.
 2021-01-18 02:42:20 -05:00
Leo Famulari 4b3f5bef4b
gnu: linux-libre: Update to 5.10.8. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.8.
(linux-libre-5.10-pristine-source): Update hash.
 2021-01-18 02:42:20 -05:00
Tobias Geerinckx-Rice cbc2c28ad4
gnu: xapian, python-xapian-bindings: Update to 1.4.18. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.18.
 2021-01-18 01:34:53 +01:00
Tobias Geerinckx-Rice ca16ca5428
gnu: iptables: Update to 1.8.7. 
* gnu/packages/linux.scm (iptables): Update to 1.8.7.
 2021-01-18 01:34:53 +01:00
Tobias Geerinckx-Rice c65e3c9d41
gnu: nftables: Update to 0.9.8. 
* gnu/packages/linux.scm (nftables): Update to 0.9.8.
 2021-01-18 01:34:53 +01:00
Tobias Geerinckx-Rice e5a806a43a
gnu: libnftnl: Update to 1.1.9. 
* gnu/packages/linux.scm (libnftnl): Update to 1.1.9.
 2021-01-18 01:34:52 +01:00
Tobias Geerinckx-Rice a1093d73c3
gnu: ktouch: Update to 20.12.1. 
* gnu/packages/education.scm (ktouch): Update to 20.12.1.
 2021-01-18 01:34:52 +01:00
Kei Kebreau f5f642058a
gnu: wxmaxima: Update to 20.12.2. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.12.2.
[arguments]: Remove #:test-target and disable tests.  Remove 'pre-check
phase.
[native-inputs]: Remove xorg-server-for-tests.
[inputs]: Add libomp.
 2021-01-17 18:07:29 -05:00
Kei Kebreau 9aa0a98ea0
gnu: gnuplot: Update to 5.4.1. 
* gnu/packages/maths.scm (gnuplot): Update to 5.4.1.
[arguments]: Set GNUTERM in #:make-flags.
 2021-01-17 18:07:29 -05:00
Ryan Desfosses 1b2c32dc91
gnu: Add emacs-org-mime 
* gnu/packages/emacs-xyz.scm (emacs-org-mime): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-01-17 23:53:54 +01:00
Tobias Geerinckx-Rice 1c33b1b8e8
gnu: nbd: Update to 3.21. 
* gnu/packages/networking.scm (nbd): Update to 3.21.
 2021-01-17 23:48:12 +01:00
Tobias Geerinckx-Rice 976d072aa2
gnu: mblaze: Update to 1.1. 
* gnu/packages/mail.scm (mblaze): Update to 1.1.
 2021-01-17 23:48:12 +01:00
Tobias Geerinckx-Rice e48cdbb9f6
gnu: keepassxc: Update to 2.6.3. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.6.3.
 2021-01-17 23:48:11 +01:00
Tobias Geerinckx-Rice a3e549b5a8
gnu: facter: Update to 4.0.49. 
* gnu/packages/admin.scm (facter): Update to 4.0.49.
 2021-01-17 23:48:11 +01:00
Tobias Geerinckx-Rice ab9f194d7e
gnu: inxi-minimal: Update to 3.2.02-2. 
* gnu/packages/admin.scm (inxi-minimal): Update to 3.2.02-2.
 2021-01-17 23:48:11 +01:00
Tobias Geerinckx-Rice f6b03a308d
gnu: oil: Update to 0.8.6. 
* gnu/packages/shells.scm (oil): Update to 0.8.6.
 2021-01-17 23:19:33 +01:00
Tobias Geerinckx-Rice 07928e11eb
gnu: pd: Update to 0.51-4. 
* gnu/packages/music.scm (pd): Update to 0.51-4.
 2021-01-17 23:19:33 +01:00
Tobias Geerinckx-Rice 99d14e5951
gnu: libhandy: Update to 1.0.3. 
* gnu/packages/gnome.scm (libhandy): Update to 1.0.3.
 2021-01-17 23:19:33 +01:00
Julien Lepiller e82a713c15
gnu: php-fpm: Ensure no duplicate group. 
* gnu/services/web.scm (php-fpm-accounts): Ensure `php-fpm` group is not
duplicated.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-01-17 20:40:52 +01:00
Leo Prikler 476b333fbc
services: cups: reuse lp from %base-groups. 
* gnu/services/cups.scm (%cups-accounts): Try to reuse lp from %base-groups.
 2021-01-17 20:16:05 +01:00
Stefan b57056a9fd
gnu: grub: Use installed unicode font. 
* gnu/bootloader/grub.scm (setup-gfxterm): Remove parameter font-file.
Refer to the installed font in /boot, not in the store.
(font-file): Delete obsolete function.
(install-grub): When populating a disk-image, install the unicode font, too.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2021-01-17 15:47:59 +01:00
Aurora 06ab894867
gnu: sbcl-cffi: Update to 0.23.0. 
* gnu/packages/lisp-xyz.scm (sbcl-cffi): Update to 0.23.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-01-17 15:27:16 +01:00
Efraim Flashner fc9fd5496f
gnu: freebayes: Update to 1.3.3. 
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.3.
[source]: Add patch. Add snippet to remove vendored library.
[build-system]: Switch to meson-build-system.
[inputs]: Remove bamtools. Add fastahack, smithwaterman, tabixpp.
[native-inputs]: Remove procps, python-2, tabixpp source, smithwaterman
source, multichoose source, fsom source, filevercmp source, fastahack
source, bash-tap source. Add bash-tap, grep, pkg-config, simde, vcflib.
[arguments]: Drop make-flags. Don't delete 'configure phase. Delete
custom 'fix-tests, 'build-tabixpp-and-vcflib, 'fix-makefiles, 'install
phases. Adjust 'unpack-submodule-sources phase to changed native-inputs.
Add new 'patch-source phase.
 2021-01-17 15:47:32 +02:00
Efraim Flashner 3ddeefe854
gnu: multichoose: Install header files. 
* gnu/packages/bioinformatics.scm (multichoose)[arguments]: Adjust
'install phase to also install header files.
 2021-01-17 15:47:32 +02:00
Efraim Flashner 976603b909
gnu: filevercmp: Install header files. 
* gnu/packages/bioinformatics.scm (filevercmp)[arguments]: Adjust
'install phase to install header files.
 2021-01-17 15:47:32 +02:00
Efraim Flashner 3d6c5560c0
gnu: Add simde. 
* gnu/packages/assembly.scm (simde): New variable.
 2021-01-17 15:47:29 +02:00
Guillaume Le Vaillant 175443948f
gnu: rtl-433: Update to 20.11. 
* gnu/packages/radio.scm (rtl-433): Update to 20.11.
 2021-01-17 14:37:04 +01:00
Guillaume Le Vaillant 9b97f39f57
gnu: gqrx: Update to 2.14.4. 
* gnu/packages/radio.scm (gqrx): Update to 2.14.4.
 2021-01-17 14:30:44 +01:00
Vincent Legoll ae018ad978
gnu: abcl: Update to 1.8.0. 
* gnu/packages/java.scm (abcl): Update to 1.8.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-01-17 13:38:22 +01:00
Mathieu Othacehe 2f497d94e7
image: Rename "raw" image-type to "efi-raw". 
* gnu/system/image.scm (raw-image-type): Rename to "efi-raw-image-type".
* guix/scripts/system.scm (%default-options): Adapt accordingly.
* doc/guix.texi: Ditto.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-01-17 11:04:25 +01:00
Sharlatan Hellseher 014845591a
gnu: Add buildapp. 
* gnu/packages/lisp.scm (buildapp): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-01-17 10:17:38 +01:00
Efraim Flashner 23b8af7962
gnu: gama: Update to 2.13. 
* gnu/packages/gps.scm (gama): Update to 2.13.
 2021-01-17 11:06:28 +02:00
Florian Pelz edd989d57a
news: Add ‘de’ translation. 2021-01-16 23:26:16 +00:00
Oleg Pykhalov c35d230c8f
gnu: youtube-dl: Update to 2021.01.16. 
* gnu/packages/video.scm (youtube-dl): Update to 2021.01.16.
 2021-01-17 02:16:18 +03:00
Alexandros Theodotou e0701ff94a
gnu: Add markets. 
* gnu/packages/gnome-xyz.scm (markets): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-01-16 23:39:24 +01:00
Tanguy Le Carrour 539c05197c
gnu: python-pep517: Update to 0.9.1. 
* gnu/packages/python-xyz.scm (python-pep517): Update to 0.9.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-01-16 23:35:18 +01:00
Simon South 181f290aa2
services: openntpd: Remove support for deprecated "-s" option. 
* gnu/services/networking.scm (openntpd-configuration): Remove
"allow-large-adjustment?" field.
(openntpd-shepherd-service): Remove use of "allow-large-adjustment?"
configuration field and "-s" daemon option.
* tests/networking.scm (%openntpd-conf-sample): Remove
"allow-large-adjustment?" field.
* doc/guix.texi (Networking Services)[openntpd-service-type]: Remove
"allow-large-adjustment?" field from sample configuration.
[openntpd-configuration]: Remove description of "allow-large-adjustment?"
field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-01-16 23:30:59 +01:00
Michael Rohleder fb3c0d3444
gnu: xfce4-whiskermenu-plugin: Update to 2.5.2. 
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.5.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-01-16 23:14:31 +01:00
Michael Rohleder fb7fb10d47
gnu: garcon: Update to 4.16.1. 
* gnu/packages/xfce.scm (garcon): Update to 4.16.1.
[native-inputs]: Add gobject-introspection, sorted alphabeticaly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-01-16 23:14:21 +01:00
Michael Rohleder 948e5c9148
gnu: xfce4-cpufreq-plugin: Update to 1.2.3. 
* gnu/packages/xfce.scm (xfce4-cpufreq-plugin): Update to 1.2.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-01-16 23:01:49 +01:00
Michael Rohleder e13f90580c
gnu: xfconf: Install bash completion. 
* gnu/packages/xfce.scm (xfconf)[arguments]: Add install-shell-completions phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-01-16 22:59:08 +01:00
Michael Rohleder d08a292ad8
gnu: xfwm4: Update to 4.16.1. 
* gnu/packages/xfce.scm (xfwm4): Update to 4.16.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-01-16 22:59:02 +01:00