Commit graph

62206 commits

Author SHA1 Message Date
Ricardo Wurmus 297854e682
gnu: r-rbowtie2: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8fdca89b56
gnu: r-zfpkm: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 620cc4d976
gnu: r-webbioc: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.60.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 08c4d31400
gnu: r-widgettools: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.66.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus ee0f746088
gnu: r-wiggleplotr: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 996f07b591
gnu: r-wrench: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.6.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus ff9f179a0c
gnu: r-xcms: Update to 3.10.1.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.1.
[propagated-inputs]: Remove r-multtest; add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 11cf2d7bb7
gnu: r-massspecwavelet: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.54.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus bcd06bdbff
gnu: r-xbseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 1ec10e1987
gnu: r-roar: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.24.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus a37a6ffb2d
gnu: r-yarn: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 70d90ae76d
gnu: r-quantro: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 761c9427bc
gnu: r-yaqcaffy: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.48.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 9ce80f9356
gnu: r-simpleaffy: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.64.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus f0439a1767
gnu: r-gcrma: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.60.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 8a5abc62d5
gnu: r-yapsa: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings, r-bsgenome-hsapiens-ucsc-hg19,
r-doparallel, r-dplyr, r-ggbeeswarm, r-magrittr, and r-pracma.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 63c14717e3
gnu: r-somaticsignatures: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.24.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus a471def062
gnu: r-gtrellis: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.20.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6e397aad32
gnu: r-yamss: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 4eccf8e5e5
gnu: r-ebimage: Update to 4.30.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.30.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus e059ab2503
gnu: r-aucell: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6314938884
gnu: r-allelicimbalance: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.26.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 231898d5b9
gnu: r-annotationtools: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.62.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 7866994c03
gnu: r-annotationfuncs: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.38.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 6a65ac1537
gnu: r-abaenrichment: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 19b39ac579
gnu: r-gofuncr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.8.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus a007de81e5
gnu: r-atacseqqc: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.3.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus 785c759617
gnu: r-genomicscores: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.0.0.
[propagated-inputs]: Remove r-bsgenome; add r-delayedarray, r-hdf5array, and r-rhdf5.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus e6fbaf0cc7
gnu: r-motifstack: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus e65783e032
gnu: r-motifbreakr: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.2.0.
[propagated-inputs]: Add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus da6a75fe00
gnu: r-motifdb: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.30.0.
[propagated-inputs]: Add r-genomicranges.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 352cfa3434
gnu: r-motiv: Update to 1.43.0.
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.43.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 6d02e17139
gnu: r-rgadem: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 7450edca0d
gnu: r-bacon: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.16.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 35bcfaefae
gnu: r-abseqr: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.6.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus b391b1e47c
gnu: r-a4: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 2a91c987fd
gnu: r-a4base: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus e47f9f48d4
gnu: r-a4reporting: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 6afea4ea93
gnu: r-a4preproc: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 33c9c8563d
gnu: r-a4classif: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 4f2112add9
gnu: r-a4core: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus d200b4dc48
gnu: r-annaffy: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.60.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 500f7df840
gnu: r-mlinterfaces: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.68.0.
[propagated-inputs]: Add r-rcpp.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 63c8323ae9
gnu: r-clusterprofiler: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.0.
[propagated-inputs]: Remove r-ggplot2; add r-downloader and r-dplyr.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus 43fb14cedc
gnu: r-enrichplot: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.8.1.
[propagated-inputs]: Add r-plyr and r-scatterpie.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 3a80f1cfae
gnu: r-dose: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.14.0.
[propagated-inputs]: Remove r-s4vectors.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 1dec455cb8
gnu: r-fgsea: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus b1d76ad0ca
gnu: r-sigpathway: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.56.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 8d30d59adf
gnu: r-anota: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.36.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus 621cd90406
gnu: r-gosemsim: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.0.
2020-06-13 01:19:52 +02:00