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Ludovic Courtès 2535635f18
Use (ice-9 binary-ports) instead of (rnrs io ports). 
This reduces the closure of (guix ui) from 123 to 106 modules.

* guix/derivations.scm: Use (ice-9 binary-ports) instead of (rnrs io
ports).
(map-derivation)[substitute-file]: Use 'read-string' instead of
'get-string-all'.
* guix/ftp-client.scm: Likewise.
* guix/hash.scm: Likewise.
* guix/http-client.scm: Likewise.
* guix/pki.scm (ensure-acl, current-acl): Likewise.
* guix/scripts/archive.scm (authorize-key)[read-key]: Likewise.
* guix/scripts/authenticate.scm (read-canonical-sexp)
(read-hash-data): Likewise.
* guix/scripts/download.scm: Likewise.
* guix/scripts/offload.scm (register-gc-root, remove-gc-roots)
(send-files): Likewise.
* guix/scripts/publish.scm (lazy-read-file-sexp): Likewise.
* guix/scripts/refresh.scm: Likewise.
* guix/scripts/substitute.scm (check-acl-initialized): Likewise.
* guix/serialization.scm (read-maybe-utf8-string): Likewise.
* guix/scripts/hash.scm (guix-hash): Use 'force-output' instead of
'flush-output-port'.
* guix/store.scm (process-stderr): Likewise.
* guix/tests.scm: Likewise.
* guix/utils.scm: Use (ice-9 binary-ports) and autoload (rnrs io ports)
for 'make-custom-binary-input-port'.
 2016-10-19 15:54:10 +02:00
Ludovic Courtès 4bb54cc42f
lint: Suggest @code instead of quotes. 
* guix/scripts/lint.scm (%quoted-identifier-rx): New variable.
(check-description-style)[check-quotes]: New procedure.
Use it.
* tests/lint.scm ("description: suggest ornament instead of quotes"):
New test.
 2016-10-19 15:54:10 +02:00
Ludovic Courtès 4534d85e70
gnu: Add Ao. 
* gnu/packages/engineering.scm (ao): New variable.
 2016-10-19 15:54:10 +02:00
Ludovic Courtès a966281f2d
gnu: glfw: Propagate the relevant inputs. 
* gnu/packages/gl.scm (glfw)[inputs]: Rename to...
[propagated-inputs]: ... this.  Add LIBXXF86VM.
 2016-10-19 15:54:10 +02:00
Ludovic Courtès 7fee5b5397
container: Allow 'container-excursion' to the same namespaces. 
Before that, 'container-excursion' would call 'setns' even when the
target namespace is the one the caller is already in, which would fail.

* gnu/build/linux-container.scm (container-excursion): Introduce
'source' and 'target'.  Compare the result of 'readlink' on these
instead of comparing file descriptors to decide whether to call
'setns'.
* tests/containers.scm ("container-excursion, same namespace"): New test.
 2016-10-19 15:54:10 +02:00
Roel Janssen 99df12cd19
gnu: Add r-biocstyle. 
* gnu/packages/bioinformatics.scm (r-biocstyle): New variable.
 2016-10-19 15:22:06 +02:00
Roel Janssen 207ce8fbe5
gnu: Add r-biocviews. 
* gnu/packages/bioinformatics.scm (r-biocviews): New variable.
 2016-10-19 15:09:55 +02:00
Benz Schenk b747718e23
gnu: Add iperf. 
* gnu/packages/networking.scm (iperf): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-19 13:19:07 +01:00
Hartmut Goebel b5a5fb1927
gnu: python-dateutil, python-dateutil-2: Update to new home-page. 
* gnu/packages/python.scm (python-dateutil, python2-dateutil,
  python-dateutil-2, python2-dateutil-2)[home-page]: Update URL.
 2016-10-19 11:52:54 +02:00
Roel Janssen c79ad57a8d
gnu: Add r-optparse. 
* gnu/packages/bioinformatics.scm (r-optparse): New variable.
 2016-10-19 10:48:56 +02:00
Roel Janssen 2acaaee550
gnu: Add r-getopt. 
* gnu/packages/bioinformatics.scm (r-getopt): New variable.
 2016-10-19 09:55:45 +02:00
Federico Beffa 7d95c0006a
gnu: Add GHC 8.0.1. 
* gnu/packages/haskell.scm (ghc-8): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 1bd00f1737
gnu: Add ghc-hashtables. 
* gnu/packages/haskell.scm (ghc-hashtables): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa db61a00971
gnu: Add ghc-easyplot. 
* gnu/packages/haskell.scm (ghc-easyplot): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 4225c7116d
gnu: Add ghc-hmatrix-gsl-stats. 
* gnu/packages/haskell.scm (ghc-hmatrix-gsl-stats): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 271a5365aa
gnu: Add ghc-hmatrix-special. 
* gnu/packages/haskell.scm (ghc-hmatrix-special): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 932104abce
gnu: Add ghc-hmatrix-gsl. 
* gnu/packages/haskell.scm (ghc-hmatrix-gsl): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 95595618b1
gnu: Add ghc-hmatrix. 
* gnu/packages/haskell.scm (ghc-hmatrix): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 725dddd7fb
gnu: Add ghc-storable-complex. 
* gnu/packages/haskell.scm (ghc-storable-complex): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa fb6d2d75f3
gnu: Add chez-fmt. 
* gnu/packages/chez.scm (chez-fmt): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 87d6c9ef8a
gnu: Add chez-irregex. 
* gnu/packages/chez.scm (chez-irregex): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 387541907f
gnu: Add chez-matchable 
* gnu/packages/chez.scm (chez-matchable): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 74f9c19092
gnu: Add chez-sockets 
* gnu/packages/chez.scm (chez-sockets): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 4dfe4eee55
gnu: Add chez-web 
* gnu/packages/chez.scm (chez-web): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa c344b85dd0
gnu: Add chez-srfi. 
* gnu/packages/chez.scm (chez-srfi): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 13bbc0cc94
gnu: chez-scheme: Move to new module. 
* gnu/packages/scheme.scm (chez-scheme, nanopass, stex): Move variables ...
* gnu/packages/chez.scm (chez-scheme, nanopass, stex): ... here. New module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
 2016-10-19 08:44:11 +02:00
Federico Beffa f7616df4af
gnu: chez-scheme: Fix i686 build. 
* gnu/packages/scheme.scm (chez-scheme): Add 'configure-flags', generalize
  'configure' phase and simplify 'install-doc' phase.
 2016-10-19 08:44:11 +02:00
Federico Beffa 4b86dde0d6
gnu: chez-scheme: Add search-path. 
* gnu/packages/scheme.scm (chez-scheme)[native-search-paths]: New field.
 2016-10-19 08:44:11 +02:00
Christopher Allan Webber f7017a719d
build: Remove reference to nonexistant patch file. 
* gnu/local.mk: Remove reference to kobodeluxe-spelling.patch,
  which was removed during a revision to the submitted kobodeluxe package.
 2016-10-18 21:31:52 -05:00
Christopher Allan Webber 3d1fe340db
gnu: kobodeluxe: Indicate origin of kobodeluxe-paths.patch. 
* gnu/packages/patches/kobodeluxe-paths.patch: Update header, pointing
  to Debian tarball for provenance.
 2016-10-18 20:35:01 -05:00
Leo Famulari ca121ae8d7
gnu: mariadb: Update to 10.1.18. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.18.
 2016-10-18 21:32:11 -04:00
Leo Famulari 0cf3a7259b
gnu: mysql: Update to 5.7.16. 
* gnu/packages/databases.scm (mysql): Update to 5.7.16.
 2016-10-18 21:32:03 -04:00
Stephen Webber a56145e1fa
gnu: Add kobodeluxe. 
* gnu/packages/games.scm (kobodeluxe): New variable.
* gnu/packages/patches/kobodeluxe-paths.patch: New file.
* gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file.
* gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file.
* gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file.
* gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file.
* gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-10-18 20:23:03 -05:00
ng0 91988aee12
gnu: torsocks: Update to 2.2.0. 
* gnu/packages/patches/torsocks-dns-test.patch: Delete file.
* gnu/local.mk: Remove it.
* gnu/packages/tor.scm (torsocks): Update to 2.2.0.
[source]: Remove patch. Change method from 'git-fetch' to 'url-fetch'.
Remove 'file-name'.
[arguments]: Remove 'bootstrap' phase.
[native-inputs]: Remove autoconf, automake and libtool. Also remove
obsoleted perl-test-harness.
[home-page]: Use https URL.
(define-module): Don't import perl.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-18 23:45:06 +01:00
Andreas Enge 15ca49b220
gnu: hdf4: Really fix non-x86 architectures. 
This is a follow-up to commit 60da9fb110.

* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
 2016-10-18 21:15:43 +02:00
Efraim Flashner 1dc30f9232
gnu: enlightenment: Update to 0.21.3. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.3.
 2016-10-18 08:57:54 +03:00
Ludovic Courtès fb3af759ee
grafts: Remove unnecessary 'umask' call. 
This is a followup to d722678633.

* guix/build/graft.scm (rewrite-directory): Remove 'umask' call.
 2016-10-17 23:59:03 +02:00
Ludovic Courtès 3d47aa81ba
grafts: Apply the right grafts in the presence of multiple outputs. 
Fixes <http://bugs.gnu.org/24712>.

* guix/grafts.scm (cumulative-grafts): Add grafts for all the outputs of
DRV.
* tests/grafts.scm ("graft-derivation, replaced derivation has multiple
outputs"): New test.
 2016-10-17 23:59:03 +02:00
Ludovic Courtès 645b9df858
guix build: Add '--with-graft'. 
* guix/scripts/build.scm (transform-package-inputs/graft): New procedure.
(%transformations): Add 'with-graft'.
(%transformation-options): Likewise.
(show-transformation-options-help): Document it.
* tests/scripts-build.scm ("options->transformation, with-graft"): New
test.
* doc/guix.texi (Package Transformation Options): Document it.
 2016-10-17 23:59:02 +02:00
Ludovic Courtès 31c2fd1e01
guix build: Factorize transformation option parsing. 
* guix/scripts/build.scm (%transformation-options): Introduce 'parser'
procedure and use it.
 2016-10-17 23:59:02 +02:00
Ludovic Courtès 5cf01aa53f
guix build: Extract '--with-input' replacement spec parsing. 
* guix/scripts/build.scm (evaluate-replacement-specs): New procedure.
(transform-package-inputs)[not-equal]: Remove.
[replacements]: Define in terms of 'evaluate-replacement-specs'.
 2016-10-17 23:59:02 +02:00
Efraim Flashner 00bfd498f9
gnu: tor: Update to 0.2.8.9. 
* gnu/packages/tor.scm (tor): Update to 0.2.8.9.
 2016-10-18 00:25:30 +03:00
Efraim Flashner a31ac11385
gnu: vapoursynth: Update to 34. 
* gnu/packages/video.scm (vapoursynth): Update to 34.
 2016-10-18 00:08:09 +03:00
Efraim Flashner 8ee04627d8
gnu: zimg: Update to 2.3. 
* gnu/packages/image.scm (zimg): Update to 2.3.
 2016-10-18 00:07:20 +03:00
Efraim Flashner b333d00c35
gnu: jasper: Update to 1.900.5. 
* gnu/packages/image.scm (jasper): Update to 1.900.5.
[source]: Remove patches.
[native-inputs]: Remove unzip.
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2008-3522.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1577.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-10-17 23:51:38 +03:00
Leo Famulari 6ace9f80f1
gnu: diffoscope: Update to 61. 
* gnu/packages/package-management.scm (diffoscope): Update to 61.
 2016-10-17 16:39:46 -04:00
John Darrington 040b6299d5
gnu: openssh: Enable kerberos features. 
* gnu/packages/ssh.scm (openssh) [arguments]: Add flag --with-kerberos5.
[inputs]: Add mit-krb5.
 2016-10-17 21:52:53 +02:00
Mark H Weaver cd829fe306
gnu: linux-libre: Update to 4.8.2. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.2.
 2016-10-17 15:23:46 -04:00
Mark H Weaver 43f1d02ddc
gnu: linux-libre@4.4: Update to 4.4.25. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.25.
 2016-10-17 15:22:33 -04:00
Rene Saavedra 0bd697591b
gnu: Add xpad. 
* gnu/packages/gnome.scm (xpad): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-10-17 15:09:31 -04:00