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Author SHA1 Message Date
Ricardo Wurmus 251e6950d8
gnu: r-genomation: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.26.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 38d13a6747
gnu: r-geneoverlap: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.30.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 7e80f6fb57
gnu: r-genefilter: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.76.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 3a2cab95b1
gnu: r-gage: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.44.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 309e04ba18
gnu: r-fastseg: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.40.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 7973617595
gnu: r-ensembldb: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 46663d5769
gnu: r-edger: Update to 3.36.0. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.36.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 933366ffe7
gnu: r-edaseq: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.28.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus de8089a767
gnu: r-dirichletmultinomial: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.36.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus cb87707987
gnu: r-dexseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.40.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus 87db919dbb
gnu: r-deseq2: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.34.0.
 2021-11-07 22:34:38 +00:00
Ricardo Wurmus f34bcc5c6b
gnu: r-copywriter: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.26.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus e5d90645ea
gnu: r-complexheatmap: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.10.0.
[propagated-inputs]: Remove r-cairo.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 126a4b6c9d
gnu: r-chipseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.44.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus cd7c1e2c3e
gnu: r-chipseeker: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 395e9ab420
gnu: r-category: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.60.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus a6b83bd30d
gnu: r-bsgenome: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.62.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus eea602cdbb
gnu: r-biovizbase: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.42.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 7851f7f2c6
gnu: r-biostrings: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.62.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus d0ceaf62fc
gnu: r-biomart: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 918c08e20d
gnu: r-biobase: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.54.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus e606add2e4
gnu: r-bamsignals: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.26.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 9efb70c077
gnu: r-aroma-light: Update to 3.24.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.24.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 7f291d0965
gnu: r-annotationhub: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus c46f294350
gnu: r-annotationforge: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.36.0.
 2021-11-07 22:34:37 +00:00
Ricardo Wurmus 0e31c0034a
gnu: r-annotationfilter: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.18.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus eccd328684
gnu: r-annotationdbi: Update to 1.56.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.1.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus eee1bc786a
gnu: r-annotate: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.72.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 5b63db8f83
gnu: r-affxparser: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.66.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 5de927226c
gnu: r-affyio: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.64.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 5ab6e9e100
gnu: r-affycoretools: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.66.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 21b5db3f1e
gnu: r-affycontam: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.52.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 71f58a16ae
gnu: r-affycompatible: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.54.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus a610856e88
gnu: r-affycomp: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.70.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 1a4e10d555
gnu: r-affy: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.72.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus a85e744c3d
gnu: r-iranges: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.28.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 1acf3f1821
gnu: r-ideoviz: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.30.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus b0a2fc9253
gnu: r-bluster: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.4.0.
 2021-11-07 22:34:36 +00:00
Ricardo Wurmus 35ccf99fff
gnu: r-delayedarray: Update to 0.20.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.20.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 7cc053eaca
gnu: r-deepsnv: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.40.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 628a8f8c78
gnu: r-decipher: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.22.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 07b14e81f9
gnu: r-cummerbund: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.36.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 9d51c1f423
gnu: r-coverageview: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.32.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 3622390699
gnu: r-biocgenerics: Update to 0.40.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.40.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 6ed26516bf
gnu: r-biocversion: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.14.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus fc0fa7a431
gnu: r-aneufinder: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.22.0.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus d1c79f5a2c
gnu: r-biocparallel: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.0.
[arguments]: Adjust build phase to patch renamed file.
 2021-11-07 22:34:35 +00:00
Ricardo Wurmus 4a92ab58f6
gnu: Add r-msfeatures. 
* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus 22b568de43
guix: Upgrade to Bioconductor 3.14. 
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.14.
* guix/import/cran.scm (%bioconductor-version): Same.
 2021-11-07 22:34:34 +00:00
Ricardo Wurmus 92b85194cd
gnu: r-with-tests: Update patch to DESCRIPTION file. 
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Patch line breaks and
spaces in DESCRIPTION file to ensure reproducible build.
 2021-11-07 22:34:34 +00:00