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Author SHA1 Message Date
Nicolas Goaziou 2282d21fd6
gnu: rust-regex-syntax-0.6: Update to 0.6.25. 
* gnu/packages/crates-io.scm (rust-regex-syntax-0.6): Update to 0.6.25.
 2021-06-03 14:24:34 +02:00
Nicolas Goaziou ef0daad211
gnu: rust-reqwest-0.11: Fix build. 
* gnu/packages/crates-io.scm (rust-reqwest-0.11)[arguments]: Add missing Cargo
development inputs.
 2021-06-03 14:24:33 +02:00
Nicolas Goaziou c0796540de
gnu: rust-reqwest-0.11: Update to 0.11.3. 
* gnu/packages/crates-io.scm (rust-reqwest-0.11): Update to 0.11.3.
 2021-06-03 14:24:33 +02:00
Nicolas Goaziou c695df8c5f
gnu: rust-sha2-0.9: Update to 0.9.5. 
* gnu/packages/crates-io.scm (rust-sha2-0.9): Update to 0.9.5.
 2021-06-03 14:24:33 +02:00
Nicolas Goaziou adc7fc093e
gnu: Add rust-cpufeatures-0.1. 
* gnu/packages/crates-io.scm (rust-cpufeatures-0.1): New variable.
 2021-06-03 14:24:32 +02:00
Nicolas Goaziou 558db7b6e5
gnu: Add rust-sha2-asm-0.6. 
* gnu/packages/crates-io.scm (rust-sha2-asm-0.6): New variable.
(rust-sha2-asm-0.5): Inherit from above.
 2021-06-03 14:24:32 +02:00
Nicolas Goaziou 11d84f4b7f
gnu: rust-url-2: Update to 2.2.2. 
* gnu/packages/crates-io.scm (rust-url-2): Update to 2.2.2.
 2021-06-03 14:24:32 +02:00
Nicolas Goaziou e4283e03a3
gnu: rust-assert-cmd-1: Update to 1.0.4. 
* gnu/packages/crates-io.scm (rust-assert-cmd-1): Update to 1.0.4.
 2021-06-03 14:24:31 +02:00
Xinglu Chen c78d6c60cf
news: Add entry for 'guix import egg'. 
* etc/news.scm: Add entry.
 2021-06-03 13:06:52 +02:00
Xinglu Chen bdc298ecee
import: Add CHICKEN egg importer. 
* guix/import/egg.scm: New file.
* guix/scripts/import/egg.scm: New file.
* tests/egg.scm: New file.
* Makefile.am (MODULES, SCM_TESTS): Register them.
* po/guix/POTFILES.in: Likewise.
* guix/scripts/import.scm (importers): Add egg importer.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-06-03 13:05:18 +02:00
Ludovic Courtès 1e8ebb16c9
gnu-maintenance: 'generic-html' computes the right source URL. 
Fixes a regression introduced in
84f8bae0f8, whereby the URL computed for
the new ffmpeg (for instance) would be:

  https://ffmpeg.org/ffmpeg-4.4.tar.xz

instead of:

  https://ffmpeg.org/releases/ffmpeg-4.4.tar.xz

Reported by Maxim Cournoyer.

* guix/gnu-maintenance.scm (latest-html-release)[url->release]: Adjust
computation in the case of a URI-reference with a relative path.
 2021-06-03 13:04:20 +02:00
Ludovic Courtès fe509e017f
machine: ssh: Respect calling convention for monadic procedures. 
Fixes a regression introduced in
2885c3568e.

Reported by Mathieu Othacehe.

* gnu/machine/ssh.scm (deploy-managed-host)[eval/error-handling]: Return
two values in the standard case.
 2021-06-03 13:04:20 +02:00
Ricardo Wurmus 0928e55266
gnu: Add fit-sne. 
* gnu/packages/bioinformatics.scm (fit-sne): New variable.
 2021-06-03 12:22:29 +02:00
Lars-Dominik Braun 13b737f132
gnu: r-with-tests: Use patched texlive-amsfonts. 
See commit 75af43162e.

* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Replace
texlive-amsfonts with texlive-amsfonts/patched.
 2021-06-03 11:18:03 +02:00
Leo Prikler f6a979860c
gnu: openshot: Use free font. 
* gnu/packages/video.scm (openshot)[inputs]: Use font-dejavu.
[patch-font-location]: Adjust accordingly.
 2021-06-03 08:49:18 +02:00
Leo Prikler a923127d30
gnu: Remove font-ubuntu. 
The Ubuntu Font License has not been approved by the FSF and is considered
non-free by Debian and Fedora, see <https://bugs.gnu.org/48802>.

* gnu/packages/fonts.scm (font-ubuntu): Removed variable.
 2021-06-03 08:29:04 +02:00
Pierre Neidhardt 80a6de6b3a
gnu: Add legit. 
* gnu/packages/lisp-xyz.scm (cl-legit, ecl-legit, sbcl-legit): New variables.
 2021-06-03 08:23:28 +02:00
Pierre Neidhardt 929b72dd58
gnu: Add simple-inferiors. 
* gnu/packages/lisp-xyz.scm (cl-simple-inferiors, ecl-simple-inferiors,
sbcl-simple-inferiors): New variables.
 2021-06-03 08:23:28 +02:00
Leo Famulari 9e7d93f675
gnu: curl: Update to 7.77.0 [fixes CVE-2021-{22897,22898,22901}]. 
* gnu/packages/curl.scm (curl/fixed): Replace with ...
(curl-7.77.0): ... new variable.
(curl)[replacement]: Use curl-7.77.0.
 2021-06-02 23:13:16 -04:00
Marius Bakke 6d71f6a73c
gnu: expat: Replace with 2.4.1 [fixes CVE-2013-0340]. 
* gnu/packages/xml.scm (expat-2.4.1): New variable.
(expat)[replacement]: New field.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2021-06-02 17:07:15 -04:00
Xinglu Chen f32e6e1e2c
gnu: Add emacs-org-pandoc-import. 
* gnu/packages/emacs-xyz.scm (emacs-org-pandoc-import): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-06-02 21:51:06 +02:00
Diego Nicola Barbato 5be7870a8d
gnu: pioneer: Build with model files. 
Fixes <https://bugs.gnu.org/48686>.

* gnu/packages/games.scm (pioneer)[arguments]: Add make-flags for building
with model files.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-06-02 21:38:32 +02:00
Ricardo Wurmus b851f38a2f
gnu: r-robustbase: Update to 0.93-8. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-8.
 2021-06-02 17:27:10 +02:00
Ricardo Wurmus 02efdd3abf
gnu: r-deoptimr: Update to 1.0-9. 
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-9.
 2021-06-02 17:27:10 +02:00
Ricardo Wurmus 08de5b0689
gnu: r-beeswarm: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-beeswarm): Update to 0.4.0.
 2021-06-02 17:27:10 +02:00
Ricardo Wurmus c6be262b78
gnu: r-fastcluster: Update to 1.2.3. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.2.3.
 2021-06-02 17:27:10 +02:00
Ricardo Wurmus 350489b331
gnu: r-matrixstats: Update to 0.59.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.59.0.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 3319e97c40
gnu: r-e1071: Update to 1.7-7. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-7.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus a3268eb598
gnu: r-rcpparmadillo: Update to 0.10.5.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.5.0.0.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus a8313bfbae
gnu: r-rversions: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-rversions): Update to 2.1.1.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 80f2d363b8
gnu: r-formatr: Update to 1.11. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.11.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 61d7869e89
gnu: r-mgcv: Update to 1.8-36. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-36.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus fdc6bfa2aa
gnu: r-matrix: Update to 1.3-4. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.3-4.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 72e8eabc3a
gnu: r-textshape: Update to 1.7.3. 
* gnu/packages/cran.scm (r-textshape): Update to 1.7.3.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 0af6a92695
gnu: r-calculus: Update to 0.3.1. 
* gnu/packages/cran.scm (r-calculus): Update to 0.3.1.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 9b9bb2b732
gnu: r-seurat: Update to 4.0.2. 
* gnu/packages/cran.scm (r-seurat): Update to 4.0.2.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus d9d8a1cdc0
gnu: r-parsnip: Update to 0.1.6. 
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.6.
[propagated-inputs]: Add r-lifecycle.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus f6ae19fedc
gnu: r-clusterr: Update to 1.2.5. 
* gnu/packages/cran.scm (r-clusterr): Update to 1.2.5.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 17bd981986
gnu: r-rsconnect: Update to 0.8.18. 
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.18.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 318808dcdd
gnu: r-forecast: Update to 8.15. 
* gnu/packages/cran.scm (r-forecast): Update to 8.15.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 317267c460
gnu: r-archivist: Update to 2.3.6. 
* gnu/packages/cran.scm (r-archivist): Update to 2.3.6.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus b3aad04bed
gnu: r-biclust: Update to 2.0.3. 
* gnu/packages/cran.scm (r-biclust): Update to 2.0.3.
 2021-06-02 17:27:09 +02:00
Ricardo Wurmus 83fa31438d
gnu: r-actuar: Update to 3.1-4. 
* gnu/packages/cran.scm (r-actuar): Update to 3.1-4.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 184b3c500c
gnu: r-gdina: Update to 2.8.7. 
* gnu/packages/cran.scm (r-gdina): Update to 2.8.7.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 47cdb9c9a8
gnu: r-parameters: Update to 0.14.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.14.0.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 8998ed1d8e
gnu: r-leiden: Update to 0.3.8. 
* gnu/packages/cran.scm (r-leiden): Update to 0.3.8.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 81bb987e7e
gnu: r-plot3d: Update to 1.4. 
* gnu/packages/cran.scm (r-plot3d): Update to 1.4.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 509eea0f5d
gnu: r-dalex: Update to 2.2.1. 
* gnu/packages/cran.scm (r-dalex): Update to 2.2.1.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 37fc760ef1
gnu: r-spdep: Update to 1.1-8. 
* gnu/packages/cran.scm (r-spdep): Update to 1.1-8.
[source]: Remove generated files, including Rmarkdown files whose outputs
conflict with the main Rmarkdown file.
 2021-06-02 17:27:08 +02:00
Ricardo Wurmus 0a6526ebfd
gnu: r-tidytree: Update to 0.3.4. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.4.
 2021-06-02 17:27:08 +02:00