TakeV/guix
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
96913 commits 103 branches 35 tags 492 MiB
Commit graph

96913 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus
440bd1b617
gnu: r-parameters: Update to 0.18.1. 
* gnu/packages/cran.scm (r-parameters): Update to 0.18.1.
 2022-05-30 15:34:46 +02:00
Ricardo Wurmus
0880acbcb5
gnu: r-clue: Update to 0.3-61. 
* gnu/packages/cran.scm (r-clue): Update to 0.3-61.
 2022-05-30 15:34:39 +02:00
Ricardo Wurmus
7815efe731
gnu: r-cobs: Update to 1.3-5. 
* gnu/packages/cran.scm (r-cobs): Update to 1.3-5.
 2022-05-30 15:34:34 +02:00
Ricardo Wurmus
56373df33a
gnu: r-gee: Update to 4.13-23. 
* gnu/packages/cran.scm (r-gee): Update to 4.13-23.
 2022-05-30 15:34:28 +02:00
Ricardo Wurmus
d3cb071050
gnu: r-qpdf: Update to 1.2.0. 
* gnu/packages/cran.scm (r-qpdf): Update to 1.2.0.
[source]: Remove trailing #T from snippet.
[arguments]: Remove trailing #T from 'configure phase.
[inputs]: Add libjpeg-turbo.
 2022-05-30 15:30:47 +02:00
Ricardo Wurmus
bfcae1efbb
gnu: r-batchelor: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1.
 2022-05-30 15:16:35 +02:00
Efraim Flashner
d2a9142852
gnu: gcc-9: Update to 9.5.0. 
* gnu/packages/gcc.scm (gcc-9): Update to 9.5.0.
 2022-05-30 15:28:04 +03:00
Efraim Flashner
dc26d0f94e
gnu: hello: Update to 2.12.1. 
* gnu/packages/base.scm (hello): Update to 2.12.1.
 2022-05-30 15:28:04 +03:00
Efraim Flashner
a037815f62
gnu: nss: Skip tests on riscv64-linux. 
* gnu/packages/nss.scm (nss)[arguments]: Skip tests when building for
riscv64-linux.
 2022-05-30 15:26:17 +03:00
Efraim Flashner
19e1045352
gnu: nss: Adjust make-flags for riscv64-linux. 
* gnu/packages/nss.scm (nss)[arguments]: When building for riscv64-linux
don't build the binaries with gtest.
 2022-05-30 15:18:17 +03:00
Evgenii Lepikhin
69b27be15d
gnu: Add rust-serde-regex-1. 
* gnu/packages/crates-io.scm (rust-serde-regex-1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:53 +03:00
Evgenii Lepikhin
6ec464ced7
gnu: rust-nom-7: Update to 7.1.1. 
* gnu/packages/crates-io.scm (rust-nom-7): Update to 7.1.1.
[arguments]: In cargo-inputs replace rust-minimal-lexical-0.1 with 0.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:52 +03:00
Evgenii Lepikhin
4f5a71d5b7
gnu: Add rust-minimal-lexical-0.2. 
* gnu/packages/crates-io.scm (rust-minimal-lexical-0.2): New variable.
(rust-minimal-lexical-0.1): Inherit from rust-minimal-lexical-0.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:52 +03:00
Evgenii Lepikhin
4b18cb437a
gnu: Add rust-located-yaml-0.2. 
* gnu/packages/crates-io.scm (rust-located-yaml-0.2) New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:51 +03:00
Evgenii Lepikhin
30cf5284b2
gnu: Add rust-pretty-0.11. 
* gnu/packages/crates-io.scm (rust-pretty-0.11) New variable.
(rust-pretty-0.5): Inherit from rust-pretty-0.11.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:51 +03:00
Evgenii Lepikhin
acada2580f
gnu: Add rust-nom-locate-4. 
* gnu/packages/crates-io.scm (rust-nom-locate-4): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:50 +03:00
Efraim Flashner
4259a6516a
gnu: virtuoso-ose: Register patch. 
This is a follow-up to 48efbde7a9.

* gnu/local.mk (dist_patch_DATA): Register patch.
 2022-05-30 10:42:47 +03:00
Efraim Flashner
1a8519dd01
gnu: yt-dlp: Remove trailing #t. 
* gnu/packages/video.scm (yt-dlp)[source]: Remove trailing #t from
snippet.
[arguments]: Remove trailing #t from phases.
 2022-05-30 10:41:28 +03:00
Efraim Flashner
d56506aad5
gnu: yt-dlp: Update to 2022.05.18. 
* gnu/packages/video.scm (yt-dlp): Update to 2022.05.18.
[inputs]: Add python-brotli and python-certifi.
 2022-05-30 10:41:28 +03:00
Efraim Flashner
e5dd864e68
gnu: links: Update to 2.27. 
* gnu/packages/web-browsers.scm (links): Update to 2.27.
 2022-05-30 10:41:25 +03:00
Roel Janssen
48efbde7a9
gnu: virtuoso-ose: Update to 7.2.7. 
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.7; Run autogen
  after applying the patch below.
* gnu/packages/patches/virtuoso-ose-remove-pre-built-jar-files.patch:
  New file.
 2022-05-30 09:03:02 +02:00
Mark H Weaver
7f63a6aefc
gnu: icecat: Update to 91.9.1-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2022-1529 and CVE-2022-1802.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2022-05-29 23:21:41 -04:00
Wiktor Zelazny
acb08304c8
gnu: Add python-gpy. 
* gnu/packages/python-science.scm (python-gpy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-29 23:56:06 +02:00
Wiktor Zelazny
6400f08d07
gnu: Add python-paramz. 
* gnu/packages/python-science.scm (python-paramz): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-29 23:56:05 +02:00
Wiktor Zelazny
6dacd15381
gnu: Add python-climin. 
* gnu/packages/python-science.scm (python-climin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-29 23:56:05 +02:00
Felix Gruber
3d1b2bc740
gnu: wla-dx: Update to 10.1. 
* gnu/packages/assembly.scm (wla-dx): Update to 10.1.
[native-inputs]: Use new style.
[arguments]: Add custom 'check phase to run run_tests.sh.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-29 23:56:05 +02:00
Ludovic Courtès
40530ffd15
store: Record cache lookups in 'references/cached'. 
* guix/store.scm (references/cached): Add call to
'record-cache-lookup!'.
 2022-05-29 23:56:01 +02:00
Danny Milosavljevic
98e2f4fbeb
gnu: openjdk: Update to 17.0.3. 
* gnu/packages/java.scm (openjdk17): Update to 17.0.3.
 2022-05-29 22:57:19 +02:00
Julien Lepiller
d1f4b6dc83
gnu: python-translate-toolkit: Update to 3.6.2. 
* gnu/packages/python-xyz.scm (python-translate-toolkit): Update to
  3.6.2.
 2022-05-29 22:20:15 +02:00
Julien Lepiller
31a9d8677c
gnu: python-user-agents: Update to 2.2.0. 
* gnu/packages/python-xyz.scm (python-user-agents): Update to 2.2.0.
 2022-05-29 21:30:45 +02:00
Julien Lepiller
92a83f38b5
gnu: python-ua-parser: Update to 0.10.0. 
* gnu/packages/python-xyz.scm (python-ua-parser): Update to 0.10.0.
 2022-05-29 21:30:16 +02:00
Efraim Flashner
e8b2219152
gnu: lagrange: Update to 1.13.6. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.13.6.
[source]: Adjust snippet to remove another bundled library.
 2022-05-29 19:26:47 +03:00
Efraim Flashner
9cd22702b8
gnu: wget: Update to 1.21.3. 
* gnu/packages/wget.scm (wget): Update to 1.21.3.
 2022-05-29 16:31:59 +03:00
Efraim Flashner
1ed40eee39
gnu: mutt: Update to 2.2.5. 
* gnu/packages/mail.scm (mutt): Update to 2.2.5.
 2022-05-29 16:31:59 +03:00
Efraim Flashner
46ed423e28
gnu: git-annex: Update to 10.20220525. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220525.
 2022-05-29 16:31:59 +03:00
Efraim Flashner
e4fe344a5c
gnu: nmap: Honor tests? flag. 
* gnu/packages/admin.scm (nmap)[arguments]: In custom 'check phase honor
the #:tests? flag.
 2022-05-29 16:31:09 +03:00
Efraim Flashner
50970a28b7
gnu: wgetpaste: Remove trailing #t from phases. 
* gnu/packages/wget.scm (wgetpaste)[arguments]: Remove trailing #t from
phases.
 2022-05-29 16:31:09 +03:00
Efraim Flashner
c62be7d530
gnu: wgetpaste: Add missing input. 
* gnu/packages/wget.scm (wgetpaste)[inputs]: Add bash-minimal.
 2022-05-29 16:23:48 +03:00
cage
69af8a6837
gnu: telescope: Update to 0.8.1. 
* gnu/packages/web-browsers.scm (telescope): Update to 0.8.1.
[home-page]: Update to new upstream home-page.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-29 16:10:34 +03:00
Efraim Flashner
d540e686ef
gnu: Add pbuilder. 
* gnu/packages/debian.scm (pbuilder): New variable.
 2022-05-29 16:01:02 +03:00
Rene Saavedra
b456086c65
gnu: apostrophe: Build with correct webkitgtk. 
* gnu/packages/gnome.scm (apostrophe)[inputs]: Replace webkitgtk with
webkitgtk-with-libsoup2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-29 15:53:48 +03:00
Ricardo Wurmus
e640da33f3
Merge branch 'wip-r' 2022-05-29 11:49:03 +02:00
Ricardo Wurmus
89e9262012
gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Update to 1.3.993. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): Update to 1.3.993.
 2022-05-29 11:44:09 +02:00
Efraim Flashner
926fcb488b
gnu: clang-from-llvm: Fix building on riscv64-linux. 
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: When building for
riscv64-linux add configure-flags and make-flags to ensure linking with
'-latomic'.
 2022-05-29 08:46:17 +03:00
Mădălin Ionel Patrașcu
a5f4c03df1
gnu: Add r-scmap. 
* gnu/packages/bioconductor.scm (r-scmap): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-29 00:43:05 +02:00
Ricardo Wurmus
cb115ba722
gnu: pigx-sars-cov-2: Fix build. 
* gnu/packages/bioinformatics.scm (pigx-sars-cov-2)[arguments]: Add
'autoreconf phase to patch build system.
 2022-05-29 00:39:19 +02:00
Ricardo Wurmus
df3e5cfa05
gnu: pigx-bsseq: Fix build. 
* gnu/packages/bioinformatics.scm (pigx-bsseq)[arguments]: Patch build system
in 'autoreconf phase.
 2022-05-29 00:34:29 +02:00
Ricardo Wurmus
b64f4a1245
gnu: pigx-scrnaseq: Fix build. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Add autoreconf
step to work around m4 macro bug and missing VERSION file.
[native-inputs]: Add autoconf and automake.
 2022-05-29 00:29:19 +02:00
Ricardo Wurmus
add551f651
gnu: pigx-chipseq: Fix build. 
* gnu/packages/bioinformatics.scm (pigx-chipseq)[arguments]: Patch build
system.
 2022-05-29 00:18:48 +02:00
Mădălin Ionel Patrașcu
a4b90009c7
gnu: Add r-googlevis. 
* gnu/packages/cran.scm (r-googlevis): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-29 00:01:47 +02:00