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82866 commits

Author SHA1 Message Date
Ludovic Courtès 1d580f47a9
gnu: ocaml@4.07: Fix link failure.
The link failure shows up when using ld from GNU Binutils 2.37, and not
with 2.34.

* gnu/packages/patches/ocaml-multiple-definitions.patch: New file.
* gnu/packages/ocaml.scm (ocaml-4.07-boot)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-08-05 15:46:46 +02:00
Efraim Flashner bfb690be87
gnu: mesa: Build more vulkan drivers on aarch64-linux.
* gnu/packages/gl.scm (mesa)[arguments]: Adjust the configure-flags to
also build vulkan drivers on aarch64-linux for broadcom and swrast.
2021-08-05 13:36:03 +03:00
Efraim Flashner 8e885757c7
gnu: mesa: Fix building on aarch64-linux.
* gnu/packages/gl.scm (mesa)[arguments]: Adjust custom
'disable-failing-test phase to skip test failing on aarch64-linux.
2021-08-05 13:35:16 +03:00
Ludovic Courtès 1685128e6e
gnu: mesa-opencl, mesa-opencl-icd: Build all the LLVM targets again.
Reported by John Kehayias <john.kehayias@protonmail.com>
in <https://issues.guix.gnu.org/49794>.

* gnu/packages/patches/mesa-opencl-all-targets.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa-opencl)[source]: Use it.
2021-08-03 18:18:45 +02:00
Thiago Jung Bauermann 2b6bf23c60
gnu: texlive-latex-base: Propagate ‘texlive-latex-l3backend’
Some packages need files from ‘texlive-latex-l3backend’ – which is a
supporting package of LaTeX3 – so propagate it from ‘texlive-latex-base’.

* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Remove
‘texlive-latex-l3backend’ from the texlive union.
* gnu/packages/tex.scm (texlive-latex-base)[propagated-inputs]: Add
‘texlive-latex-l3backend’.
(texlive-latex-xkeyval)[native-inputs]: Remove ‘texlive-latex-l3backend’.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-03 18:18:45 +02:00
Marius Bakke 5e4cdb5b3b
gnu: python-django: Fix test failure.
* gnu/packages/django.scm (python-django)[arguments]: Set PYTHONPATH.
2021-08-01 23:24:47 +02:00
Marius Bakke 1f82eeec8d
gnu: mg: Update style.
* gnu/packages/text-editors.scm (mg)[native-inputs, inputs]: Remove labels.
[arguments]: Use SEARCH-INPUT-FILE and #$OUTPUT in phases.
2021-08-01 23:24:47 +02:00
Marius Bakke 317313a178
gnu: mg: Convert arguments to gexp.
* gnu/packages/text-editors.scm (mg)[arguments]: Turn into gexp.
2021-08-01 23:24:46 +02:00
Marius Bakke d2e102d4e4
Merge branch 'master' into core-updates-frozen 2021-08-01 23:23:32 +02:00
Marius Bakke 536bec1ce5
gnu: zathura: Update to 0.4.8.
* gnu/packages/pdf.scm (zathura): Update to 0.4.8.
2021-08-01 23:19:29 +02:00
Marius Bakke 4a8a184278
gnu: girara: Update to 0.3.6.
* gnu/packages/gtk.scm (girara): Update to 0.3.6.
2021-08-01 23:19:29 +02:00
Marius Bakke be73c55ae5
gnu: sbcl-cl-libxml2: Remove duplicate input.
* gnu/packages/lisp-xyz.scm (sbcl-cl-libxml2)[native-inputs]: Remove SBCL-LIFT.
2021-08-01 23:19:29 +02:00
Marius Bakke 5c121be1f9
gnu: python-django: Update to 3.2.5 [fixes CVE-2021-35042].
* gnu/packages/django.scm (python-django): Update to 3.2.5.
2021-08-01 23:19:29 +02:00
Marius Bakke 3e5e10d51b
gnu: mg: Update to 20210609.
* gnu/packages/text-editors.scm (mg): Update to 20210609.
[source](snippet): Remove trailing #t.
2021-08-01 23:19:29 +02:00
Nicolas Goaziou 6e99e113e6
gnu: emacs-ts: Update to 0.2.2.
* gnu/packages/emacs-xyz.scm (emacs-ts): Update to 0.2.2.
2021-08-01 20:57:47 +02:00
Nicolas Goaziou c044940a67
gnu: emacs-magit: Update to 3.2.0.
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.2.0.
2021-08-01 20:56:05 +02:00
Nicolas Goaziou 9634f7f42e
gnu: emacs-eacl: Update to 2.1.0.
* gnu/packages/emacs-xyz.scm (emacs-eacl): Update to 2.1.0.
2021-08-01 20:54:14 +02:00
Arun Isaac 5b6447fcce
gnu: Add go-github-com-klauspost-compress.
* gnu/packages/golang.scm (go-github-com-klauspost-compress): New variable.
2021-08-01 19:46:58 +05:30
Arun Isaac 7aa2972bfa
gnu: Add go-github-com-flynn-noise.
* gnu/packages/golang.scm (go-github-com-flynn-noise): New variable.
2021-08-01 19:20:27 +05:30
Arun Isaac c94683e017
gnu: Add go-golang-org-x-term.
* gnu/packages/golang.scm (go-golang-org-x-term): New variable.
2021-08-01 19:20:27 +05:30
Arun Isaac 42d9c3b24a
gnu: Add go-lukechampine-com-blake3.
* gnu/packages/golang.scm (go-lukechampine-com-blake3): New variable.
2021-08-01 19:20:26 +05:30
Arun Isaac edaea8d2ac
gnu: Add go-github-com-dustin-go-humanize.
* gnu/packages/golang.scm (go-github-com-dustin-go-humanize): New variable.
2021-08-01 19:20:26 +05:30
Arun Isaac 344460bab4
gnu: Add go-github-com-davecgh-go-xdr.
* gnu/packages/golang.scm (go-github-com-davecgh-go-xdr): New variable.
2021-08-01 19:20:21 +05:30
Morgan Smith fcba63f8b7
gnu: Add emacs-autocrypt.
* gnu/packages/emacs-xyz.scm (emacs-autocrypt): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-08-01 18:14:55 +05:30
Ricardo Wurmus 5ab679f4da
gnu: Add libpst.
* gnu/packages/mail.scm (libpst): New variable.
2021-08-01 14:23:08 +02:00
Nicolas Goaziou 42aee12103
gnu: scintilla: Update to 5.1.1.
* gnu/packages/text-editors.scm (scintilla): Update to 5.1.1.
2021-08-01 13:44:35 +02:00
Nicolas Goaziou 532000024f
gnu: emacs-evil-nerd-commenter: Update to 3.5.5.
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.5.5.
2021-08-01 13:23:14 +02:00
Nicolas Goaziou e916f9ab60
gnu: emacs-evil-matchit: Update to 2.3.13.
* gnu/packages/emacs-xyz.scm (emacs-evil-matchit): Update to 2.3.13.
2021-08-01 13:19:44 +02:00
Nicolas Goaziou 89d6664bab
gnu: emacs-evil-collection: Update to 0.0.6.
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.6.
2021-08-01 13:18:16 +02:00
Nicolas Goaziou 6e0eb82f21
gnu: emacs-perspective: Update to 2.16.
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.16.
2021-08-01 13:16:38 +02:00
Nicolas Goaziou dbbadb87b4
gnu: giac: Update to 1.7.0-23.
* gnu/packages/algebra.scm (giac): Update to 1.7.0-23.
2021-08-01 13:06:33 +02:00
Felix Gruber c8bcef2598
gnu: sameboy: Update to 0.14.4.
* gnu/packages/emulators.scm (sameboy): Update to 0.14.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-01 12:58:03 +02:00
Ludovic Courtès b2a5a180cf
gnu: glib-networking: Update to 2.68.1.
* gnu/packages/gnome.scm (glib-networking): Update to 2.68.1.
2021-07-31 23:46:17 +02:00
Ludovic Courtès 0a1a1ad213
gnu: glib-networking: Skip failing test.
* gnu/packages/patches/glib-networking-gnutls-binding.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (glib-networking)[source]: Use it.
2021-07-31 23:42:21 +02:00
Ludovic Courtès 9fb7269059
gnu: icedtea@1.13.13: Add 'file-name' field to the origins.
* gnu/packages/java.scm (icedtea-6)[native-inputs]: Add 'file-name'
field to all the origins.
2021-07-31 15:51:39 +02:00
Ludovic Courtès 69dde4e354
gnu: gnutls: Patch the Guile bindings for EINTR/EAGAIN handling.
* gnu/packages/patches/gnutls-guile-eintr-eagain.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[source]: Use it.
2021-07-31 15:44:58 +02:00
John Kehayias 2c0013916e
gnu: mesa: Update to 21.1.6.
* gnu/packages/gl.scm (mesa): Update to 21.1.6.
* gnu/packages/patches/mesa-skip-tests.patch: Remove cache_test.c as it is no
longer needed (test passes).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-31 12:08:32 +02:00
Kaelyn Takata 554e09254c
gnu: libdrm: Update to 2.4.107.
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.107, and change
libpciaccess to a propagated input as the pkg-config for libdrm_intel now
includes it in the libs.
[arguments]: Add conditional testing support to the replacement for the
standard check phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-31 11:30:41 +02:00
Marius Bakke f8458a2282
build-system/python: Handle missing metadata on Python 2.
* gnu/packages/aux-files/python/sanity-check.py: Catch the less specific
EnvironmentError rather than FileNotFoundError as the latter is Python 3
only.
2021-07-30 15:54:31 +02:00
Marius Bakke b029be2ee0
Merge branch 'master' into core-updates-frozen
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
2021-07-29 22:34:57 +02:00
Ricardo Wurmus ffb381856d
gnu: r-xcms: Update to 3.14.1.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.1.
2021-07-29 20:20:18 +02:00
Ricardo Wurmus e06beb503c
gnu: r-reportingtools: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.1.
2021-07-29 20:20:15 +02:00
Tobias Geerinckx-Rice c022c1e5b2
gnu: php: Update to 7.4.22 [security fixes].
* gnu/packages/php.scm (php): Update to 7.4.22.
2021-07-29 19:57:57 +02:00
Christopher Lemmer Webber 45235e67e4
system: Add (gnu system setuid).
I flubbed and somehow when including the patch series, this got dropped.
Oops... should fix things again.

* gnu/system/setuid.scm: New file.
2021-07-29 13:09:48 -04:00
Brice Waegeneire a85ec0bf69
services: Migrate to <setuid-program>.
* gnu/services/dbus.scm (dbus-setuid-programs, polkit-setuid-programs):
  Return setuid-programs.
* gnu/services/desktop.scm (enlightenment-setuid-programs): Return
 setuid-programs.
 (%desktop-services)[mount-setuid-helpers]: Use setuid-programs.
* gnu/services/docker.scm (singularity-setuid-programs): Return
 setuid-programs.
* gnu/services/xorg.scm(screen-locker-setuid-programs): Return
 setuid-programs.
* gnu/system.scm (%setuid-programs): Return setuid-programs.
* doc/guix.texi (Setuid Programs, operating-system Reference): Replace
  'list of G-expressions' with 'list of <setuid-program>'.
2021-07-29 11:32:48 -04:00
Chris Lemmer-Webber a7ac19851b
services: setuid: More configurable setuid support.
New record <setuid-program> with fields for setting the specific user
and group, as well as specifically selecting the setuid and setgid bits,
for a program within the setuid-program-service.

* gnu/services.scm (setuid-program-file-like-deprecated): New function.
  (setuid-program-service-type): Make use of
  setuid-program->activation-gexp.  Adjust the extend property to handle
  <setuid-program>.
* gnu/build/activation.scm (activate-setuid-programs): Update to expect a
  <setuid-record> list for each program entry.
* gnu/system.scm: (operating-system-setuid-programs): Renamed to
  %operating-system-setuid-programs and replace it with new procedure.
  (operating-system-default-essential-services,
  hurd-default-essential-services): Replace
  operating-system-setuid-programs with
  %operating-system-setuid-programs.
* gnu/system/setuid.scm: New file.
* doc/guix.texi (Setuid Programs): Document <setuid-program>.

Co-authored-by: Brice Waegeneire <brice@waegenei.re>
2021-07-29 11:32:08 -04:00
Ricardo Wurmus 5a1ce6cf70
gnu: r-matrixstats: Update to 0.60.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.60.0.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus 2c625a4969
gnu: r-e1071: Update to 1.7-8.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-8.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus 234549dbfe
gnu: r-protolite: Update to 2.1.1.
* gnu/packages/cran.scm (r-protolite): Update to 2.1.1.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus d9a5c8b7e3
gnu: r-lwgeom: Update to 0.2-7.
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-7.
2021-07-29 17:11:09 +02:00