TakeV/guix
1
0
Fork 0
Code Issues Pull requests Packages Projects Releases Wiki Activity
58717 commits 102 branches 35 tags 561 MiB
Commit graph

58717 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus 91108903bc
gnu: r-mclust: Update to 5.4.6. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.6.
[native-inputs]: Add r-knitr.
 2020-04-14 16:40:58 +02:00
Ricardo Wurmus e470b9fa99
gnu: r-sfsmisc: Update to 1.1-6. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-6.
 2020-04-14 16:40:58 +02:00
Ricardo Wurmus 28e1e573cb
gnu: r-plotly: Update to 4.9.2.1. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.2.1.
 2020-04-14 16:40:58 +02:00
Ricardo Wurmus 5269899aac
gnu: r-devtools: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.3.0.
[native-inputs]: Add r-knitr.
 2020-04-14 16:40:58 +02:00
Ricardo Wurmus f3310342ac
gnu: r-backports: Update to 1.1.6. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.6.
 2020-04-14 16:40:58 +02:00
Ricardo Wurmus 1f08818752
gnu: r-xml2: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.1.
 2020-04-14 16:40:58 +02:00
Ricardo Wurmus e872949f0d
gnu: r-gdtools: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.2.
 2020-04-14 16:40:58 +02:00
Ricardo Wurmus 3805ce3dba
gnu: r-reshape2: Update to 1.4.4. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.4.
 2020-04-14 16:40:58 +02:00
Ricardo Wurmus e78c54e7c6
gnu: r-survival: Update to 3.1-12. 
* gnu/packages/statistics.scm (r-survival): Update to 3.1-12.
 2020-04-14 16:40:58 +02:00
Ricardo Wurmus 14fd16ff83
gnu: r-nlme: Update to 3.1-147. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-147.
 2020-04-14 16:40:58 +02:00
Jan (janneke) Nieuwenhuizen 22a98cda38
gnu: Add rkdeveloptool. 
* gnu/packages/hardware.scm (rkdeveloptool): New variable.
 2020-04-14 16:21:36 +02:00
Ludovic Courtès bd4c345ef7
doc: Improve anchor collection. 
This allows us to catch "operating_002dsystem-1", for instance.

* doc/build.scm (syntax-highlighted-html)[build](anchor-id->key): Drop
"-1" & co. from ID.
 2020-04-14 16:01:53 +02:00
Ludovic Courtès 4487e42cba
doc: Avoid invalid 'match' pattern in 'syntax-highlighted-html'. 
This is a followup to da9deba13d.

Last-minute modification of the 'match' pattern would lead to an error:

  "multiple ellipsis patterns not allowed at same level"

* doc/build.scm (syntax-highlighted-html)[build](collect-anchors):
Add 'worthy-entry?' procedure and use it instead of the unsupported
pattern for ('dt ...).
 2020-04-14 16:01:45 +02:00
Ludovic Courtès f37789a523
doc: Emit hyperlinks in HTML output for @lisp snippets. 
This makes it easier to jump to the definition of a procedure or
variable when looking at a code snippet.  There can be false-positive
because scoping rules are ignored, for example, but it should be a good
approximation.

* doc/build.scm (syntax-highlighted-html)[build](highlights->sxml*): Add
'anchors' parameter.  Add clause for ('symbol text).
(syntax-highlight): Add 'anchors' parameter.  Wrap body in named let and
use it in recursive calls.  Pass ANCHORS to 'highlights->sxml*'.
(underscore-decode, anchor-id->key, collect-anchors, html?): New procedures.
(process-file): Add 'anchors' parameter. and honor it.
Rewrite mono-node and multi-node HTML files separately.
 2020-04-14 16:01:39 +02:00
Ludovic Courtès 1ae7a9251b
weather: Delete duplicate entries coming from '--manifest'. 
* guix/scripts/weather.scm (load-manifest): Call 'delete-duplicates'.
 2020-04-14 16:01:05 +02:00
Ludovic Courtès bab1f340b3
maint: Ensure substitutes are available for '%default-xorg-modules'. 
* etc/release-manifest.scm (%system-packages): Append
%DEFAULT-XORG-MODULES.
 2020-04-14 16:01:05 +02:00
Ludovic Courtès 8e8d984fd6
maint: Actually check for the availablility of system packages. 
* etc/release-manifest.scm (%system-manifest): New variable.
<top level>: Add it in 'concatenate-manifests' call.
 2020-04-14 16:01:05 +02:00
Pierre Neidhardt 53c05faf18
gnu: Add moptilities. 
* gnu/packages/lisp-xyz.scm (cl-moptilities, sbcl-moptilities): New variables.
 2020-04-14 15:49:58 +02:00
Paul Garlick c0b158dff7
gnu: Add perl-authen-passphrase. 
* gnu/packages/perl.scm (perl-authen-passphrase): New variable.
 2020-04-14 14:41:40 +01:00
Paul Garlick 602fc1e5fa
gnu: Add perl-digest-md4. 
* gnu/packages/perl.scm (perl-digest-md4): New variable.
 2020-04-14 14:41:39 +01:00
Paul Garlick 77cf8b2c60
gnu: Add perl-crypt-des. 
* gnu/packages/perl.scm (perl-crypt-des): New variable.
 2020-04-14 14:41:38 +01:00
Paul Garlick 2aa17cef57
gnu: Add perl-crypt-cbc. 
* gnu/packages/perl.scm (perl-crypt-cbc): New variable.
 2020-04-14 14:41:37 +01:00
Paul Garlick ca6b80c7f9
gnu: Add perl-crypt-mysql. 
* gnu/packages/perl.scm (perl-crypt-mysql): New variable.
 2020-04-14 14:41:36 +01:00
Paul Garlick 5b660f9f32
gnu: Add perl-crypt-passwdmd5. 
* gnu/packages/perl.scm (perl-crypt-passwdmd5): New variable.
 2020-04-14 14:41:35 +01:00
Paul Garlick 61078f0f94
gnu: Add perl-crypt-unixcrypt_xs. 
* gnu/packages/perl.scm (perl-crypt-unixcrypt_xs): New variable.
 2020-04-14 14:41:26 +01:00
Pierre Neidhardt 7cb4c5211f
gnu: sbcl-cl-str: Update to 0.17. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-str): Update to 0.17.
 2020-04-14 15:09:20 +02:00
Pierre Neidhardt df95189db6
gnu: Add cl-change-case. 
* gnu/packages/lisp-xyz.scm (cl-change-case, sbcl-cl-change-case): New
  variables.
 2020-04-14 15:09:20 +02:00
Florian Pelz 0ad60b2a89
installer: Only load uvesafb kernel module when needed. 
This is a follow-up to commit 557e6820a7.

* gnu/system/install.scm (uvesafb-shepherd-service): Check
that /dev/fb0 is not already present.
 2020-04-14 13:05:57 +00:00
Danny Milosavljevic 45c54093d5
gnu: xen: Update to 4.13.0. 
* gnu/packages/virtualization.scm (xen): Update to 4.13.0.
 2020-04-14 14:40:03 +02:00
Ricardo Wurmus fba62f8e92
gnu: pigx-chipseq: Update to 0.0.42. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.42.
 2020-04-14 14:07:57 +02:00
Ludovic Courtès 2b29219370
nls: Update. 2020-04-14 13:01:58 +02:00
Ludovic Courtès 893651af3e
installer: Open manual in the selected language on tty2. 
Fixes <https://bugs.gnu.org/40624>.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.

Regression introduced in b5c2d93d7a.

* gnu/installer.scm (apply-locale): Remove 'lambda' around
'stop-service' and 'start-service' calls.
 2020-04-14 13:01:58 +02:00
Danny Milosavljevic 6177320d78
gnu: xen: Fix build failure. 
* gnu/packages/virtualization.scm (xen)[arguments]<#:phases>[set-environment-up]:
Use CPATH instead of C_INCLUDE_PATH, CPLUS_INCLUDE_PATH.
 2020-04-14 12:04:17 +02:00
Guillaume Le Vaillant acaeaa0a29
gnu: sbcl-ironclad: Update to 0.49. 
* gnu/packages/lisp-xyz.scm (sbcl-ironclad): Update to 0.49.
  [inputs]: Add trivial-garbage.
 2020-04-14 11:26:37 +02:00
Alberto Eleuterio Flores Guerrero 5a9d2dfb74
gnu: Add emacs-typit. 
* gnu/packages/emacs-xyz.scm (emacs-typit): New variable.
 2020-04-14 11:04:47 +02:00
Alberto Eleuterio Flores Guerrero 780ed21da5
gnu: Add emacs-mmt. 
* gnu/packages/emacs-xyz.scm (emacs-mmt): New variable.
 2020-04-14 11:03:26 +02:00
Alberto EFG e896a24a15
gnu: Add emacs-uml-mode. 
* gnu/packages/emacs-xyz.scm (emacs-uml-mode): New variable.
 2020-04-14 10:57:44 +02:00
Alberto Eleuterio Flores Guerrero ff4ad2dd1e
gnu: Add emacs-org-roam. 
* gnu/packages/emacs-xyz.scm (emacs-org-roam): New variable.
 2020-04-14 10:57:40 +02:00
Alberto Eleuterio Flores Guerrero dcf9a7dc01
gnu: Add blobwars. 
* gnu/packages/games.scm (blobwars): New variable.
 2020-04-14 10:26:51 +02:00
Pierre Neidhardt 3a3ec03412
gnu: emacs-org-make-toc: Update to 0.5. 
* gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.5.
 2020-04-14 09:53:26 +02:00
Efraim Flashner 01a2911e36
gnu: volk: Update to 2.2.1. 
* gnu/packages/engineering.scm (volk): Update to 2.2.1.
[source]: Download using https.
[arguments]: Add phase to wrap binary in PYTHONPATH.
[native-inputs]: Remove python-2, python2-cheetah. Add python-wrapper,
python-mako.
[home-page]: Use https.
 2020-04-14 10:25:28 +03:00
Tobias Geerinckx-Rice c206b83985
gnu: kawa: Update to 3.1.1. 
* gnu/packages/kawa.scm (kawa): Update to 3.1.1.
 2020-04-14 07:07:04 +02:00
Tobias Geerinckx-Rice ea607b3551
gnu: kawa: Wrap to find java. 
* gnu/packages/kawa.scm (kawa)[arguments]: Add ‘wrap-kawa’ phase to set JAVA_HOME.
 2020-04-14 07:07:04 +02:00
Mark H Weaver 7059f925ea
gnu: webkitgtk: Update to 2.28.1. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.28.1.
 2020-04-13 22:29:36 -04:00
Matthew Kraai ab3ad88ded
gnu: Add python-diceware. 
* gnu/packages/python-xyz.scm (python-diceware): New public variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-13 18:47:29 -04:00
Nicolas Goaziou 11ecc5e5be
gnu: emacs-org-ref: Update to 5bb9be2232db72b04754d7e4c02a3976ad422f6f. 
* gnu/packages/emacs-xyz.scm (emacs-org-ref): Update to
5bb9be2232db72b04754d7e4c02a3976ad422f6f.
[version]: Use `git-version'.
[propagated-inputs]: Add "emacs-htmlize". Sort alphabetically.
[description]: Expound it.
 2020-04-14 00:37:38 +02:00
Leo Famulari c773c89fbb
gnu: MPD: Update to 0.21.22. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.22.
 2020-04-13 17:55:16 -04:00
Leo Famulari ad5a8c0fc1
gnu: Mutt: Update to 1.13.5. 
* gnu/packages/mail.scm (mutt): Update to 1.13.5.
 2020-04-13 17:55:12 -04:00
Mark H Weaver c4165dc0d1
gnu: linux-libre: Update to 5.4.32. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.32.
(linux-libre-5.4-pristine-source): Update hash.
 2020-04-13 17:35:58 -04:00
Mark H Weaver dd10ef3ea5
gnu: linux-libre@5.6: Update to 5.6.4. 
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.4.
(linux-libre-5.6-pristine-source): Update hash.
 2020-04-13 17:35:26 -04:00