Leo Famulari
3f717354d4
gnu: Git: Update to 2.26.1 [fixes CVE-2020-5260].
...
* gnu/packages/version-control.scm (git): Update to 2.26.1.
[native-inputs]: Update git-manpages.
2020-04-15 01:54:49 -04:00
Ludovic Courtès
d62c9b2671
Update NEWS.
2020-04-15 00:02:23 +02:00
Ludovic Courtès
8aa752ba22
services: shepherd: Increase the PID file timeout to 30s.
...
When running the installation image off a DVD, early I/O operations are
extremely slow, to the point that something like dbus-daemon would need
~20s to start. This change works around the issue.
Fixes <https://bugs.gnu.org/40572 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
* gnu/services/shepherd.scm (shepherd-configuration-file): Set
%pid-file-timeout to 30.
2020-04-15 00:02:23 +02:00
Michael Rohleder
06e48de57e
gnu: emacs-helm-ag: Update to 0.59.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Update to 0.59.
2020-04-14 22:54:34 +02:00
Marius Bakke
2e3d5fdf05
gnu: cook: Fix test failure.
...
* gnu/packages/cook.scm (cook)[arguments]: Override LC_ALL for one test.
2020-04-14 22:48:52 +02:00
Marius Bakke
671dba6566
gnu: python-pyrsistent: Update to 0.16.0.
...
* gnu/packages/python-xyz.scm (python-pyrsistent): Update to 0.16.0.
2020-04-14 22:48:51 +02:00
Marius Bakke
83031dee87
gnu: python-gssapi: Update to 1.6.5.
...
* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.6.5.
2020-04-14 22:48:51 +02:00
Marius Bakke
c0b6bb23c1
gnu: python-parso: Update to 0.7.0.
...
* gnu/packages/python-xyz.scm (python-parso): Update to 0.7.0.
2020-04-14 22:48:51 +02:00
Tobias Geerinckx-Rice
a4dd5955b3
gnu: mksh: Update to 58.
...
* gnu/packages/shells.scm (mksh): Update to 58.
2020-04-14 20:23:22 +02:00
Tobias Geerinckx-Rice
eaa668ddda
gnu: txr: Update to 235.
...
* gnu/packages/lisp.scm (txr): Update to 235.
[arguments]: Cosmetic shortening.
2020-04-14 20:23:22 +02:00
Tobias Geerinckx-Rice
92e52d25ad
gnu: txr: Call ./configure manually instead of patching.
...
* gnu/packages/lisp.scm (txr)[source]: Remove patch.
[arguments]: Add ‘--prefix’ to #:configure-flags.
Use a custom ‘configure’ phase.
* gnu/packages/patches/txr-shell.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice
c3f88d4f34
gnu: txr: Declare test target.
...
* gnu/packages/lisp.scm (txr)[arguments]: Use #:test-target instead of
a trivial custom ‘check’ phase.
2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice
8aa0d29d3e
gnu: i2pd: Update to 2.31.0.
...
* gnu/packages/i2p.scm (i2pd): Update to 2.31.0.
2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice
d9b9989a5b
gnu: strongswan: Update to 5.8.4.
...
* gnu/packages/networking.scm (strongswan): Update to 5.8.4.
2020-04-14 20:23:21 +02:00
Brice Waegeneire
1373cb4080
doc: Fix typo.
...
* doc/guix.texi (Web Services)[nginx-php-fpm-location]: Replace
'nginx-php-fpm-location' by 'nginx-php-location'.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-04-14 19:21:12 +01:00
Tobias Geerinckx-Rice
d94271f9ca
gnu: python-podcastparser: Update to 0.6.5.
...
* gnu/packages/gpodder.scm (python-podcastparser): Update to 0.6.5.
2020-04-14 17:33:12 +02:00
Tobias Geerinckx-Rice
49f8912bca
gnu: man-pages: Update to 5.06.
...
* gnu/packages/man.scm (man-pages): Update to 5.06.
2020-04-14 17:33:11 +02:00
Tobias Geerinckx-Rice
0fc1feec2e
gnu: x265: Update to 3.3.
...
* gnu/packages/video.scm (x265): Update to 3.3.
2020-04-14 17:33:11 +02:00
Ricardo Wurmus
9536367ca0
gnu: r-glue: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.4.0.
[native-inputs]: Add commment explaining why r-knitr is not an input.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus
3707efe4e1
gnu: r-rcpparmadillo: Update to 0.9.860.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.860.2.0.
[native-inputs]: Remove r-knitr, r-rmarkdown, ghc-pandoc, and
ghc-pandoc-citeproc.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus
9a6bc4c214
gnu: r-atacseqqc: Update to 1.10.4.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus
f4be4995d6
gnu: r-a4base: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus
851081bf34
gnu: r-varianttools: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus
64cf2ff90e
gnu: r-genomicinteractions: Update to 1.20.3.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
1971d11db9
gnu: r-delayedarray: Update to 0.12.3.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.3.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
679609e179
gnu: r-s4vectors: Update to 0.24.4.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.4.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
79759bc427
gnu: r-httpcode: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-httpcode): Update to 0.3.0.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
e9962d8a6b
gnu: r-isoband: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-isoband): Update to 0.2.1.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
5c819cd214
gnu: r-anthropometry: Update to 1.14.
...
* gnu/packages/cran.scm (r-anthropometry): Update to 1.14.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
172fea2c0a
gnu: r-lhs: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-lhs): Update to 1.0.2.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
cee6e12acf
gnu: r-txtplot: Update to 1.0-4.
...
* gnu/packages/cran.scm (r-txtplot): Update to 1.0-4.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
72db4e234d
gnu: r-parameters: Update to 0.6.1.
...
* gnu/packages/cran.scm (r-parameters): Update to 0.6.1.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
2274df5ae7
gnu: r-sf: Update to 0.9-1.
...
* gnu/packages/cran.scm (r-sf): Update to 0.9-1.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
e515dd6068
gnu: r-spdata: Update to 0.3.5.
...
* gnu/packages/cran.scm (r-spdata): Update to 0.3.5.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
b05caf7080
gnu: r-classint: Update to 0.4-3.
...
* gnu/packages/cran.scm (r-classint): Update to 0.4-3.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus
43594ac04a
gnu: r-lemon: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-lemon): Update to 0.4.4.
[propagated-inputs]: Add r-rlang.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
e1e73f6b0e
gnu: r-compositions: Update to 1.40-5.
...
* gnu/packages/cran.scm (r-compositions): Update to 1.40-5.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
96cda4517d
gnu: r-lmertest: Update to 3.1-2.
...
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-2.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
708ef6247f
gnu: r-usethis: Update to 1.6.0.
...
* gnu/packages/cran.scm (r-usethis): Update to 1.6.0.
[propagated-inputs]: Remove r-clisymbols; add r-cli and r-rematch2.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
10ce5ca824
gnu: r-fs: Update to 1.4.1.
...
* gnu/packages/cran.scm (r-fs): Update to 1.4.1.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
dceb9a702b
gnu: r-effectsize: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-effectsize): Update to 0.3.0.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
50df1d7b37
gnu: r-multcomp: Update to 1.4-13.
...
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-13.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
4bfa2b2536
gnu: r-survey: Update to 4.0.
...
* gnu/packages/cran.scm (r-survey): Update to 4.0.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
7ab2b36ffb
gnu: r-sjmisc: Update to 2.8.4.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.4.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
3552a8dfe4
gnu: r-arules: Update to 1.6-5.
...
* gnu/packages/cran.scm (r-arules): Update to 1.6-5.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
3343ec5262
gnu: r-xfun: Update to 0.13.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.13.
[native-inputs]: Add comment about not adding r-knitr.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
f14664aa5f
gnu: r-rcpp: Update to 1.0.4.6.
...
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.4.6.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
2e47488c72
gnu: r-lubridate: Update to 1.7.8.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.8.
[propagated-inputs]: Remove r-stringr; add r-generics.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus
b493e5aba8
gnu: r-cairo: Update to 1.5-12.
...
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus
ec2b99c1f0
gnu: r-lme4: Update to 1.1-23.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-23.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-statmod.
2020-04-14 16:40:58 +02:00