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Author SHA1 Message Date
Ludovic Courtès 2a2856d5cc
challenge: Actually delete nars that have been extracted. 
Fixes <https://issues.guix.gnu.org/55809>.
Reported by Vagrant Cascadian <vagrant@reproducible-builds.org>.

* guix/scripts/challenge.scm (make-directory-writable): New procedure.
(call-with-mismatches)[restore-file*]: New procedure.
Use it instead of 'restore-file'.
 2022-06-13 12:27:34 +02:00
Guillaume Le Vaillant c318f4fcb1
gnu: txr: Update to 277. 
* gnu/packages/lisp.scm (txr): Update to 277.
  [inputs]: Add zlib.
 2022-06-13 11:06:57 +02:00
Ludovic Courtès 6aa457fed1
Merge branch 'staging' 2022-06-13 08:57:51 +02:00
Marius Bakke d4482e9a9e
gnu: ungoogled-chromium: Update to 102.0.5005.115-1. 
* gnu/packages/chromium.scm (%chromium-version): Set to 102.0.5005.115.
(%ungoogled-revision): Set to 1.
(%ungoogled-origin, ungoogled-chromium): Update hash.
 2022-06-13 00:44:12 +02:00
Marius Bakke bcd9866eb4
gnu: LLVM, Clang, LLD: Update to 14.0.5. 
* gnu/packages/llvm.scm (llvm-14, clang-14, lld-14): Update to 14.0.5.
(%llvm-monorepo-hashes, %llvm-patches): Adjust accordingly.
 2022-06-13 00:44:12 +02:00
Marius Bakke d3d00b1b4f
gnu: uBlock Origin: Update to 1.43.0. 
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.43.0.
 2022-06-13 00:44:12 +02:00
Ricardo Wurmus 0006a9a83a
gnu: Add r-deconvr. 
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
 2022-06-12 22:51:23 +02:00
Ricardo Wurmus eec1724ea6
gnu: Add r-rsq. 
* gnu/packages/cran.scm (r-rsq): New variable.
 2022-06-12 22:51:23 +02:00
Ludovic Courtès 622545de6c
Merge branch 'master' into staging 2022-06-12 22:49:47 +02:00
jgart 9c036f2dfb
gnu: Add emacs-corfu-doc-terminal. 
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-06-12 13:19:24 +02:00
jgart a473d74ff1
gnu: Add emacs-corfu-terminal. 
* gnu/packages/emacs-xyz.scm (emacs-corfu-terminal): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-06-12 13:19:23 +02:00
Efraim Flashner e22b55f0b9
gnu: llvm-14: Fix configure-flags for cross-compiling. 
* gnu/packages/llvm.scm (llvm-14)[arguments]: Fix syntax error in
configure-flags when cross-compiling llvm.
 2022-06-12 13:50:47 +03:00
Efraim Flashner 3cbef19a90
gnu: zig: Limit to 64bit systems. 
* gnu/packages/zig.scm (zig)[supported-systems]: New field.
 2022-06-12 13:50:47 +03:00
Efraim Flashner 2a34333d0c
guix: packages: Add %32bit-supported-systems, %64bit-supported-systems. 
* guix/packages.scm (%32bit-supported-systems,
%64bit-supported-systems): New variables.
(%supported-systems): Rewrite using %32bit-supported-systems,
%64bit-supported-systems.
 2022-06-12 13:50:43 +03:00
Ricardo Wurmus 541823b318
gnu: r-hdf5array: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus a12ec47cbd
gnu: r-universalmotif: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus a76b657d93
gnu: r-rsubread: Update to 2.10.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus 41435e0e1c
gnu: r-clusterprofiler: Update to 4.4.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus 640b45d73c
gnu: r-monocle: Update to 2.24.1. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus 8ed8c8b8da
gnu: r-chippeakanno: Update to 3.30.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus 46aab4d33d
gnu: r-zellkonverter: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus 7a344aa9e2
gnu: r-keggrest: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus 1ecac84c73
gnu: r-genomicfeatures: Update to 1.48.3. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus 15e26f97d9
gnu: r-biocparallel: Update to 1.30.3. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3.
[propagated-inputs]: Add r-codetools.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus f5899fe58b
gnu: r-deepsnv: Update to 1.42.1. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
 2022-06-12 11:16:23 +02:00
Julien Lepiller 965d54e344
gnu: java-plexus-component-metadata: Fix package. 
* gnu/packages/java.scm (java-plexus-component-metadata): Apply fix for
  newer jdom.
 2022-06-12 09:07:17 +02:00
Ludovic Courtès 091eb323ba
Merge branch 'master' into staging 2022-06-08 14:53:16 +02:00
jgart via Guix-patches via 0c5299200f
gnu: Add emacs-pyimport. 
* gnu/packages/emacs-xyz.scm (emacs-pyimport): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-08 00:14:41 +02:00
Stefan Reichör 7fbf02b854
gnu: Add emacs-toodoo. 
* gnu/packages/emacs-xyz.scm (emacs-toodoo): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-08 00:09:04 +02:00
Thomas Albers 1ba8c74de3
gnu: Add emacs-opencl-mode. 
* gnu/packages/emacs-xyz.scm (emacs-opencl-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-08 00:02:53 +02:00
Ludovic Courtès 05fef7bfc6
gnu: timescaledb: Adjust test preparation to PostgreSQL 13.6. 
The previous method of making a union with symlinks would work with 13.4
but not with 13.6, which has an extra 'canonicalize_path' call in
'find_my_exec'.

* gnu/packages/databases.scm (timescaledb)[arguments]: In
'prepare-tests', pass #:symlink argument to 'union-build'.
 2022-06-07 23:58:16 +02:00
Ludovic Courtès b422687cbd
gnu: postgresql@10: Fix manual compilation. 
This is a followup to f0227a18c2.

* gnu/packages/databases.scm (postgresql-10)[native-inputs]: New field.
 2022-06-05 17:00:18 +02:00
Ludovic Courtès 5035be651a
gnu: docbook-sgml: Add 4.2. 
* gnu/packages/docbook.scm (docbook-sgml-4.2, docbook-sgml-4.1): New
variables.
(docbook-sgml): Make an alias to 'docbook-sgml-4.1'.
 2022-06-05 17:00:18 +02:00
Ludovic Courtès 5b6b4ade7c
gnu: go: Make 'make-go-std' memoizing. 
* gnu/packages/golang.scm (make-go-std): Use 'mlambdaq'.
 2022-06-05 17:00:18 +02:00
Ludovic Courtès fb21085d25
gnu: go-std: Make public. 
* gnu/packages/golang.scm (go-std-1.14, go-std-1.16, go-std-1.17): New
variables.
 2022-06-05 17:00:17 +02:00
Tobias Geerinckx-Rice 75eae3fd78
gnu: emacs-rainbow-mode: Update to 1.0.6. 
* gnu/packages/emacs-xyz.scm (emacs-rainbow-mode): Update to 1.0.6.
 2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice 1dc22f19e8
gnu: emacs-undo-tree: Update to 0.8.2. 
* gnu/packages/emacs-xyz.scm (emacs-undo-tree): Update to 0.8.2.
 2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice 4fc248ada2
gnu: emacs-ghub: Update to 3.5.6. 
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.5.6.
 2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice 9105c60f0d
gnu: putty: Update to 0.77. 
* gnu/packages/networking.scm (putty): Update to 0.77.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Remove the old 'chdir phase.  Add a custom 'check phase.
[native-inputs]: Add perl.
 2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice 66c5e40762
gnu: emacs-d-mode: Update to 2.0.12. 
* gnu/packages/emacs-xyz.scm (emacs-d-mode): Update to 2.0.12.
 2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice 8578b8d8b5
gnu: openmpi: Update to 4.1.4. 
* gnu/packages/mpi.scm (openmpi): Update to 4.1.4.
 2022-06-05 02:00:00 +02:00
Jai Vetrivelan 5a42df6e49
gnu: Add emacs-xah-fly-keys. 
* gnu/packages/emacs-xyz.scm (emacs-xah-fly-keys): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:55:39 +02:00
Aleksandr Vityazev 8e6228d499
gnu: emacs-plz: Update to 0.1. 
* gnu/packages/emacs-xyz (emacs-plz): Update to 0.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:45:10 +02:00
Rostislav Svoboda 899c29805f
gnu: emacs-evil-collection: Update to 0.0.8. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.8.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:40:29 +02:00
André A. Gomes c53a92ca2d
gnu: emacs-modus-themes: Update to 2.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.4.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:38:27 +02:00
jgart via Guix-patches via 5f4946fac5
gnu: Add emacs-popon. 
* gnu/packages/emacs-xyz.scm (emacs-popon): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:01:41 +02:00
derekchuank@outlook.com b42ed3b77c
gnu: Add xwhite. 
* gnu/packages/xdisorg.scm (xwhite): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-06-07 18:29:13 +02:00
Foo Chuan Wei d78478758e
gnu: Add edlin. 
* gnu/packages/text-editors.scm (edlin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-06-07 18:29:13 +02:00
Felix Lechner 2c8c9403ae
gnu: nyacc: Update to 1.07.0. 
* gnu/packages/mes.scm (nyacc): Update to 1.07.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-06-07 18:29:12 +02:00
Ludovic Courtès 6764455a4b
.dir-locals: Adjust to bug-reference-mode in Emacs 28. 
* .dir-locals.el: Adjust 'bug-reference-bug-regexp' and
'bug-reference-url-format' to Emacs 28.
 2022-06-07 18:29:12 +02:00