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Author SHA1 Message Date
Mădălin Ionel Patrașcu
17978740e5
gnu: Add r-baynorm. 
* gnu/packages/bioconductor.scm (r-baynorm): New variable.

Change-Id: I83e82d3d0362874918f423ab01f038c74f3eb265
 2023-11-13 15:05:26 +01:00
Mădălin Ionel Patrașcu
f955194321
gnu: Add r-bb. 
* gnu/packages/cran.scm (r-bb): New variable.

Change-Id: Ia1f4ca93fd91d7da5c105b70683f7ecb913079a0
 2023-11-13 15:04:12 +01:00
Mădălin Ionel Patrașcu
53b4e01e29
gnu: Add r-bayesspace. 
* gnu/packages/bioconductor.scm (r-bayesspace): New variable.

Change-Id: Id9c0d23e209bafea5941a1e1f968fab5f1724eab
 2023-11-13 15:03:29 +01:00
Mădălin Ionel Patrașcu
bf93f88c20
gnu: Add r-rcppdist. 
* gnu/packages/cran.scm (r-rcppdist): New variable.

Change-Id: Iaa99d2b9c63f6803979ec74f471d2d60a2bf0635
 2023-11-13 15:01:47 +01:00
Mădălin Ionel Patrașcu
598b911334
gnu: Add r-bayesknockdown. 
* gnu/packages/bioconductor.scm (r-bayesknockdown): New variable.

Change-Id: Icceffc04071efaa8a8b79144005fa7745abc7e1a
 2023-11-13 15:01:15 +01:00
Mădălin Ionel Patrașcu
77025bd511
gnu: Add r-basicstarrseq. 
* gnu/packages/bioconductor.scm (r-basicstarrseq): New variable.

Change-Id: I88f314877ea4ab98976820a4acc337ae3a34e604
 2023-11-13 15:00:48 +01:00
Mădălin Ionel Patrașcu
4e1c6f4998
gnu: Add r-basics. 
* gnu/packages/bioconductor.scm (r-basics): New variable.

Change-Id: I6f0afeeb41f667d780707af65034d5ba978f0d4a
 2023-11-13 15:00:00 +01:00
Mădălin Ionel Patrașcu
47a4195649
gnu: Add r-basic4cseq. 
* gnu/packages/bioconductor.scm (r-basic4cseq): New variable.

Change-Id: I8a031dc010590a8ef4655633026c9dfac35213c3
 2023-11-13 14:59:26 +01:00
Mădălin Ionel Patrașcu
459d9ebd2a
gnu: Add r-bsgenome-ecoli-ncbi-20080805. 
* gnu/packages/bioconductor.scm (r-bsgenome-ecoli-ncbi-20080805):
    New variable.

Change-Id: Ic42527fa334be4c23ebe2e19461571d899db77ca
 2023-11-13 14:57:00 +01:00
Mădălin Ionel Patrașcu
628926de80
gnu: Add r-bags. 
* gnu/packages/bioconductor.scm (r-bags): New variable.

Change-Id: If0c533898a5e05809f23e7e8b52fc3d5fbffc8fb
 2023-11-13 14:55:55 +01:00
Mădălin Ionel Patrașcu
d0251c23b9
gnu: Add r-breastcancervdx. 
* gnu/packages/bioconductor.scm (r-breastcancervdx): New variable.

Change-Id: Ia3437ab67a00ce23c61553ff15f940b8a3ee9c8a
 2023-11-13 14:55:55 +01:00
nafkhamdc
951a1433f3
gnu: Add r-illuminahumanmethylationepicmanifest. 
* gnu/packages/bioinformatics.scm (r-illuminahumanmethylationepicmanifest): New variable.

Change-Id: I9635033ed5e7e44ecfaff76cd002379582900686
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-13 14:46:51 +01:00
Danny Milosavljevic
77386bdbfe
gnu: openrgb: Fix up chmod invocations inside udev rules. 
* gnu/packages/hardware.scm (openrgb)[arguments]<#:phases>[patch-chmod]: New
phase.

Change-Id: Ib82a8cc42a896aaf9dc7ea0ff36a3c259f9a26af
 2023-11-12 23:23:20 +01:00
mason1920
978f4a9dc4
gnu: Add ngtcp2. 
* gnu/packages/networking.scm (ngtcp2): New variable.

Change-Id: Id8fcedf0f2843fa37983cecb98fb76a5ccdcdc22
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
 2023-11-12 16:43:48 +01:00
Ekaitz Zarraga
1a77539987
teams: Add Ekaitz Zarraga to bootstrap and zig. 
* etc/teams.scm: Add Ekaitz Zarraga.

Change-Id: Idda2ffbc15adc3725bcd1600988582f0d4c2766a
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-11-12 16:37:09 +02:00
Ekaitz Zarraga
25ac7e893c
teams: Add Zig team. 
* etc/teams.scm (zig): New team for the zig programming language,
packages and build system.

Change-Id: I96f9ced1ad04b1cd9041c53aa8c86fe29014ccd1
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-11-12 16:37:09 +02:00
Zheng Junjie
e35b7c5386
gnu: ruby: Fix cross-compilation. 
* gnu/packages/ruby.scm (ruby-2.6,ruby-2.7): Fix cross-compilation.
[native-inputs]: When cross compiling, add this-package.
[arguments]<#:configure-flags>: When cross compiling, add LDFLAGS.

Change-Id: Iba6665ba3b1b3d5b3a9b6830a01f0f3284e35efb
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-12 14:14:56 +00:00
André Batista
34d57ba3e3
gnu: lighttpd: Update to 1.4.73. 
* gnu/packages/web.scm (lighttpd): Update to 1.4.73.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-12 14:14:22 +00:00
Christopher Baines
b035e079fa
gnu: nar-herder: Update to 0-22.bf539aa. 
* gnu/packages/package-management.scm (nar-herder): Update to 0-22.bf539aa.

Change-Id: I00e1417d8c38e4d7ce73f9acae082d562bff58f7
 2023-11-12 14:12:27 +00:00
Christopher Baines
7d32f73df5
gnu: guix-data-service: Update to 0.0.1-43.37a07c2. 
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-43.37a07c2.

Change-Id: I1149d8409444c5f1ca1927bd1e21cc541f21e906
 2023-11-12 14:12:06 +00:00
Christopher Baines
7001e85b75
gnu: guile-prometheus: Update to 0-6.4aaf902. 
* gnu/packages/guile-xyz.scm (guile-prometheus): Update to 0-6.4aaf902.

Change-Id: I98f72712d63ad5f14678bd6979d8bc4cf1f52e99
 2023-11-12 14:06:18 +00:00
Nicolas Goaziou
09b19cf8da
gnu: emacs-dracula-theme: Update to 1.8.2. 
* gnu/packages/emacs-xyz.scm (emacs-dracula-theme): Update to 1.8.2.

Change-Id: Ie2cc953d90e6ee46f1012c90af446c42921a2b4e
 2023-11-12 11:56:28 +01:00
Nicolas Goaziou
5c12e5b49c
gnu: emacs-danneskjold-theme: Improve package style. 
* gnu/packages/emacs-xyz.scm (emacs-danneskjold-theme)[arguments]: Use G-expressions.

Change-Id: I5156938633f9c6e9de2c41b9bcd72c3f92d7f842
 2023-11-12 11:56:28 +01:00
Nicolas Goaziou
2e69b4c41d
gnu: emacs-danneskjold-theme: Update to 20231110.0. 
* gnu/packages/emacs-xyz.scm (emacs-danneskjold-theme): Update to 20231110.0.

Change-Id: I6f2f2f25efd57437b46a1e1fcd1141c57d33c015
 2023-11-12 11:56:28 +01:00
Nicolas Goaziou
1d84150145
gnu: emacs-dream-theme: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-dream-theme): Update to 1.0.

Change-Id: I2189ce653a64517ea299b6d4348b16d9f2d2bb52
 2023-11-12 11:56:22 +01:00
Hilton Chain
0527b542c9
gnu: Add lld-17. 
* gnu/packages/llvm.scm (lld-17): New variable.

Change-Id: Idbb84efc1c749179dfdb874390bfc1caf4e753d3
 2023-11-12 08:49:46 +02:00
Hilton Chain
80c5cf9554
gnu: Add clang-toolchain-17. 
* gnu/packages/llvm.scm (clang-toolchain-17): New variable.

Change-Id: Iefec981c84249db0d1c740c156835dfea9030f47
 2023-11-12 08:49:46 +02:00
Hilton Chain
5cb71306eb
gnu: Add libomp-17. 
* gnu/packages/llvm.scm (libomp-17): New variable.

Change-Id: I6ad09d8feff0053dfc811a741e00445dfecb311f
 2023-11-12 08:49:46 +02:00
Hilton Chain
8d5b31394b
gnu: Add clang-17. 
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Include test runner in
CMakeLists.txt when version >= 17.
(clang-17): New variable.

Change-Id: Ia3cd8013d497b72522e95f6face5975bf79f93b3
 2023-11-12 08:49:46 +02:00
Hilton Chain
b7b945c32f
gnu: Add clang-runtime-17. 
* gnu/packages/llvm.scm (clang-runtime-17): New variable.

Change-Id: I675475e9f4914843283966f5c622cdb214d11e34
 2023-11-12 08:49:46 +02:00
Hilton Chain
6ccc8e1e16
gnu: Add llvm-17. 
* gnu/packages/llvm.scm (llvm-17): New variable.
* gnu/packages/patches/clang-17.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I8cdda0737b1137cf86887fb5b854e71977a88b6b
 2023-11-12 08:49:46 +02:00
Hilton Chain
a15312aa03
gnu: Add lld-16. 
* gnu/packages/llvm.scm (lld-16): New variable.

Change-Id: If34c0785531bc3603a56f18c18a8e4318cabc493
 2023-11-12 08:49:45 +02:00
Hilton Chain
f7bd7a24cb
gnu: Add clang-toolchain-16. 
* gnu/packages/llvm.scm (clang-toolchain-16): New variable.

Change-Id: I4bc7820b249ab93ff8b7143901c8e4220b7b8b5b
 2023-11-12 08:49:45 +02:00
Hilton Chain
5fb50c6c2e
gnu: Add libomp-16. 
* gnu/packages/llvm.scm (libomp-16): New variable.

Change-Id: I2a396f7c7a4c0e35a15ed315c291b4298c0ee967
 2023-11-12 08:49:45 +02:00
Hilton Chain
c84119fb2a
gnu: Add clang-16. 
* gnu/packages/llvm.scm (clang-16): New variable.

Change-Id: I0e62bced33d2ff5a3064917d4e95004d43dc56fb
 2023-11-12 08:49:45 +02:00
Hilton Chain
abdd1949f4
gnu: Add clang-runtime-16. 
* gnu/packages/llvm.scm (clang-runtime-16): New variable.

Change-Id: I8812e9e72b711505f7575cc3d62a9a009d25f641
 2023-11-12 08:49:45 +02:00
Hilton Chain
9638e007a7
gnu: Add llvm-16. 
* gnu/packages/llvm.scm (llvm-16): New variable.
* gnu/packages/patches/clang-16.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I27738152ca95aeeef8d8b7150fdf14825b6b0b4d
 2023-11-12 08:49:45 +02:00
Hilton Chain
15d90e7bfb
gnu: clang-runtime-from-llvm: Add phase for LLVM monorepo. 
* gnu/packages/llvm.scm (clang-runtime-from-llvm)[arguments]<#:phases>: Change
directory to "compiler-rt" for LLVM monorepo.
(clang-runtime-15,clang-runtime-14): Adjust accordingly.

Change-Id: I6a77c9d106439e4794b8531e2160e2c9ce63d86e
 2023-11-12 08:49:45 +02:00
Hilton Chain
f7411e283a
gnu: clang-runtime-from-llvm: Adjust inputs for version 15 or later. 
* gnu/packages/llvm.scm (clang-runtime-from-llvm)[native-inputs]: Add gcc-12
when version >= 15.
[inputs]: Add libffi when version >= 15.
(clang-runtime-15)[native-inputs,inputs]: Remove fields.

Change-Id: I4b385b937edbb7a2840b998b6dd3e31a17cb556f
 2023-11-12 08:49:45 +02:00
Nicolas Goaziou
af6105afc6
gnu: emacs-helm-company: Improve package style. 
* gnu/packages/emacs-xyz.scm (emacs-helm-company)[arguments]: Use
G-expressions.
[synopsis, description]: Use proper capitalization.

Change-Id: I39f6c8accd31ae9cde94d3822e2be1d5a41fc6a6
 2023-11-11 11:22:39 +01:00
Nicolas Goaziou
23332c83a2
gnu: emacs-helm-company: Update to 0.2.7. 
* gnu/packages/emacs-xyz.scm (emacs-helm-company): Update to 0.2.7.

Change-Id: I8501312580308c9ed016c5b7ebf2fe9f7964823d
 2023-11-11 11:22:02 +01:00
Nicolas Goaziou
81ade34415
gnu: emacs-irony-mode: Update to 1.6.1. 
* gnu/packages/emacs-xyz.scm (emacs-irony-mode): Update to 1.6.1.

Change-Id: I303b26b3f4891a6ef2a9f8c2d55456c7a555f06f
 2023-11-11 11:20:58 +01:00
Nicolas Goaziou
ee00dd9a50
gnu: emacs-subed: Update to 1.2.7. 
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.7.

Change-Id: Ib64097dceaf858d847a0b93da6d71baaf04fafe8
 2023-11-11 11:19:25 +01:00
Nicolas Goaziou
2a28bd0fd7
gnu: emacs-suneater-theme: Update to 2.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-suneater-theme): Update to 2.4.0.

Change-Id: I44b88f1956756e03fb1e4fee4c19ff37bf6e75c3
 2023-11-11 11:18:37 +01:00
Nicolas Goaziou
8e813f4866
gnu: emacs-citar: Fix build. 
* gnu/packages/emacs-xyz.scm (emacs-citar)[arguments]<#:phases>: Remove
VALIDATE-COMPILED-AUTOLOADS phase.

Change-Id: I1bc26caf9b208fca1a33654d81d508f0a37375f9
 2023-11-11 11:10:39 +01:00
Julien Lepiller
28ca80717d
guix: Properly compute progress bar width. 
* guix/progress.scm (progress-reporter/bar): Take font width into account to
compute progress bar width.
* guix/git.scm (show-progress): Take font width into account to compute
progress bar width.

Change-Id: I946e447c1ea7c6eb4ff805400280f39e8f1a7c02
 2023-11-11 11:07:47 +01:00
Julien Lepiller
fd11d7fbf8
guix: syscalls: Add terminal-string-width. 
* guix/build/syscalls.scm (terminal-width): New procedure.
* tests/syscalls.scm: Add tests.

Change-Id: I6c2caa9fbaffb1e8f4b8933103399be970d5a8f3
 2023-11-11 11:07:27 +01:00
Janneke Nieuwenhuizen
61c527227c
gnu: Remove m2-planet-1.9.0. 
* gnu/packages/mes.scm (m2-planet-1.9.0): Remove.

Change-Id: Ib23ff2eee63b5bf1a0b13968f871ad93fda4d537
 2023-11-11 07:34:57 +01:00
Janneke Nieuwenhuizen
552e15792b
gnu: mes: Update to 0.25. 
* gnu/packages/mes.scm (mes): Update to 0.25.
[supported-systems]: Add aarch64-linux and riscv64-linux.
[native-inputs]: For aarch64-linux, use arm-linux-gnueabihf compiler.
Update to latest m2-planet (1.11.0).

Change-Id: I8c4c46b1a0e30cdb4545186dfa93625a400bac0f
 2023-11-11 07:34:57 +01:00
Janneke Nieuwenhuizen
952d0951da
gnu: mescc-tools: Support riscv64-linux build. 
* gnu/packages/mes.scm (mescc-tools) [arguments]: Update to gexps.  Add
patch-Kaem/test.sh phase to fix shebang for riscv64-linux/qemu build.

Change-Id: Id61c04deb08138481f7290607488465710969e8d
 2023-11-11 07:34:54 +01:00