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gnu: Add r-illuminahumanmethylationepicmanifest.

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* gnu/packages/bioinformatics.scm (r-illuminahumanmethylationepicmanifest): New variable.

Change-Id: I9635033ed5e7e44ecfaff76cd002379582900686
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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nafkhamdc 2023-11-13 12:34:43 +00:00 committed by Ricardo Wurmus
parent 77386bdbfe
commit 951a1433f3
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@ -15657,6 +15657,41 @@ (define-public r-giotto
spatial single-cell expression data.")
(license license:expat))))
;; Variant of r-illuminahumanmethylationepicmanifest in the
;; (gnu packages bioconductor) module.
(define-public r-illuminahumanmethylationepicmanifest-latest
(let ((commit "a9ffbad36f5e496ece6c4c37b80e2f4f7e02d0c3")
(revision "1"))
(package
(name "r-illuminahumanmethylationepicmanifest")
(version (git-version "1.0.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url
"https://github.com/achilleasNP/IlluminaHumanMethylationEPICmanifest")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0v8f0hl0v8gwi61vgqw56rn5j09h95hj54rb8pzbn0znm162n4fc"))))
(properties `((upstream-name . "IlluminaHumanMethylationEPICmanifest")))
(build-system r-build-system)
(home-page
"https://github.com/achilleasNP/IlluminaHumanMethylationEPICmanifest")
(synopsis "Illumina Human Methylation Manifest 1.0 B5 for R and minfi")
(description
"This is a drop-in replacement for the
@code{IlluminaHumanMethylationEPIC} package. It utilizes a Manifest based on
1.0B5 annotation. As of version 0.3.0, the
@code{IlluminaHumanMethylationEPIC} package still employs the 1.0B2 annotation
manifest. A corresponding annotation package,
@code{IlluminaHumanMethylationEPICanno.ilm10b5.hg38}, is available to ensure
proper annotation. The decision to maintain the same name is due to
complications in downstream processing caused by array name lookup in certain
preprocessing options.")
(license license:artistic2.0))))
(define-public r-illuminahumanmethylationepicanno-ilm10b5-hg38
(let ((commit "3db06910e27f626e0cc8b335ff45cf9a4050a36a")
(revision "1"))