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Author SHA1 Message Date
Tobias Geerinckx-Rice aee7f3a307
gnu: youtube-dl: Update to 2020.03.24. 
* gnu/packages/video.scm (youtube-dl): Update to 2020.03.24.
 2020-03-29 01:24:10 +01:00
Tobias Geerinckx-Rice d8006740b9
gnu: Remove packages deprecated for over a year. 
* gnu/packages/admin.scm (intel-gpu-tools): Remove variable.
* gnu/packages/algebra.scm (giac-xcas): Likewise.
 2020-03-29 01:24:10 +01:00
Tobias Geerinckx-Rice 8c9dcdea0a
gnu: igraph: Update to 0.8.1. 
* gnu/packages/graph.scm (igraph): Update to 0.8.1.
 2020-03-29 01:24:10 +01:00
Tobias Geerinckx-Rice 1b36f75867
gnu: Order module imports in (gnu packages admin). 
* gnu/packages/admin.scm: Order module imports alphabetically.
 2020-03-29 01:24:09 +01:00
Tobias Geerinckx-Rice a48cf78a8e
gnu: thefuck: Update to 3.30. 
* gnu/packages/admin.scm (thefuck): Update to 3.30.
[native-inputs]: Add go.
 2020-03-29 01:24:09 +01:00
Tobias Geerinckx-Rice e3fdc0197f
gnu: light: Update to 1.2.2. 
* gnu/packages/linux.scm (light): Update to 1.2.2.
 2020-03-29 01:24:09 +01:00
Tobias Geerinckx-Rice 75083257ac
gnu: acpica: Update to 20200326. 
* gnu/packages/admin.scm (acpica): Update to 20200326.
 2020-03-29 01:24:09 +01:00
Vincent Legoll 62b9ad19e3
gnu: Add wol. 
* gnu/packages/networking.scm (wol): New public variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-29 00:02:46 +01:00
Nicolas Goaziou 735a8d997a
gnu: emacs-csv: Use proper Texinfo markup in description. 
* gnu/packages/emacs-xyz.scm (emacs-csv)[description]: Use proper Texinfo
markup.
 2020-03-28 21:33:16 +01:00
Amin Bandali c2cf286c62
Update email address and Savannah handle for Amin Bandali. 
* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm,
gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address.
* build-aux/git-authenticate.scm: Update my Savannah handle.
 2020-03-28 16:30:07 -04:00
Nicolas Goaziou 255fb17b25
gnu: armadillo: Fix typo in description. 
* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
 2020-03-28 21:27:33 +01:00
Marius Bakke 043c3d6499
gnu: KOrganizer: Fix typo in description. 
* gnu/packages/kde-pim.scm (korganizer)[description]: clanedaring -> calendaring.
 2020-03-28 20:03:50 +01:00
Efraim Flashner 619edce5cd
gnu: youtube-viewer: Add missing comment. 
This is a follow-up to 315b98b9eb.

* gnu/packages/video.scm (youtube-viewer)[arguments]: Add comment
explaining why we don't install the gtk3 variant.
 2020-03-28 21:07:08 +03:00
Leo Famulari e4257138fe
Revert "gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default." 
This commit didn't work:

https://issues.guix.gnu.org/issue/24076#13

This reverts commit c7af9d0b5e.
 2020-03-28 11:50:41 -04:00
Marius Bakke 388b432cea
deploy: Remove use of '~*' in format string. 
...since 'msgfmt' fails to interpret it.  Reported by Vagrant Cascadian
in <https://lists.gnu.org/archive/html/guix-devel/2020-03/msg00340.html>.
See also <https://bugs.gnu.org/37505>.

* guix/scripts/deploy.scm (show-what-to-deploy): Use ~d instead of ~* when
displaying machines that will be deployed.
 2020-03-28 15:55:13 +01:00
Alex Griffin 54cf5e2a35
gnu: pagekite: Update to 1.5.0.200327. 
* gnu/packages/networking.scm (pagekite): Update to 1.5.0.200327.
 2020-03-28 09:08:16 -05:00
Alex Griffin 27d8b9d976
gnu: python-socksipychain: Update to 2.1.1-1.eb5ee87. 
* gnu/packages/python-xyz.scm (python-socksipychain): Update to 2.1.1-1.eb5ee87.
 2020-03-28 09:07:06 -05:00
Pierre Neidhardt aa7f3ec0e0
gnu: sbcl-cl-containers: Update to 20200212. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-containers): Update to 20200212.
 2020-03-28 10:39:20 +01:00
Christopher Baines 24b5d8f745
gnu: lollypop: Update to 1.2.32. 
* gnu/packages/gnome.scm (lollypop): Update to 1.2.32.
 2020-03-28 09:17:59 +00:00
Ricardo Wurmus 27c3afa940
gnu: r-curl: Fix patch to respect CURL_CA_BUNDLE. 
Fixes <https://debbugs.gnu.org/40262>.

* gnu/packages/cran.scm (r-curl)[arguments]: Ensure CURLOPT_CAINFO actually
gets set.
 2020-03-27 23:38:31 +01:00
Nicolas Goaziou 9fad055023
gnu: grammalecte: Update to 1.8.0. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.8.0.
 2020-03-27 23:37:20 +01:00
Nicolas Goaziou 734eb7d79e
gnu: fet: Update to 5.44.0. 
* gnu/packages/education.scm (fet): Update to 5.44.0.
 2020-03-27 23:34:37 +01:00
Nicolas Goaziou 57be2cadf8
gnu: emacs-flycheck-grammalecte: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte): Update to 1.0.
 2020-03-27 23:32:11 +01:00
Michael Rohleder f71bce9bb2
gnu: tmate: Update to 2.4.0. 
* gnu/packages/terminals.scm (tmate): Update to 2.4.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-27 16:49:37 -04:00
Michael Rohleder 816bce684c
gnu: Neofetch: Update to 7.0.0. 
* gnu/packages/admin.scm (neofetch): Update to 7.0.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-27 16:42:26 -04:00
Ludovic Courtès 7cb77b7896
gnu: mailutils: Update to 3.9. 
* gnu/packages/mail.scm (mailutils): Update to 3.9.
[arguments]: In 'prepare-test-suite' phase, adjust name of the mda
'testsuite' files.
 2020-03-27 19:09:30 +01:00
Ludovic Courtès 2b6fe60599
packages: Use Guile 3.0 for grafts. 
* guix/packages.scm (guile-2.0): Rename to...
(guile-for-grafts): ... this, and adjust callers.  Refer to 'guile-3.0'
instead of 'guile-2.0'.
 2020-03-27 19:09:30 +01:00
Ludovic Courtès 3139739802
gnu: guile-next: Update to 3.0.2. 
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.2.
* gnu/packages/patches/guile-3.0-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-27 19:09:30 +01:00
Pierre Neidhardt eb5341c235
gnu: Add trivial-package-local-nicknames. 
* gnu/packages/lisp-xyz.scm (cl-trivial-package-local-nicknames,
  sbcl-trivial-package-local-nicknames): New variables.
 2020-03-27 18:40:21 +01:00
Ricardo Wurmus bc3fda5d2b
services/nfs: Replace nfs-version with nfs-versions. 
Instead of accepting a string for just one protocol version accept a list of
supported versions.

* gnu/services/nfs.scm (<nfs-configuration>)[nfs-version]: Remove field and
replace...
[nfs-versions]: ...with this new field.
(nfs-shepherd-services): Pass as many "--nfs-version" options as there are
supported versions.
* doc/guix.texi (Network File System): Document nfs-versions.
 2020-03-27 15:30:44 +01:00
Jakub Kądziołka 9483782a61
gnu: rust: Add 1.39 
* gnu/packages/rust.scm (rust-1.39): New variable.
  (%cargo-reference-hash): Add a comment explaining the role of the
  variable.
 2020-03-27 14:28:11 +01:00
Jakub Kądziołka 444bc2ddf2
gnu: rust: Add 1.38 
All packages are still built with rustc 1.37, but users will see rustc
1.38 in their profiles, and packages that require newer compiler
versions will be possible to add.

* gnu/packages/rust.scm (rust-1.31): Factor out the
  patch-command-exec-tests phase to a separate procedure.
  (patch-command-exec-tests-phase): New procedure.
  (rust): Rename to rust-1.37, make rust an alias.
  (rust-1.38): New variable.
 2020-03-27 14:28:06 +01:00
Nicolas Goaziou 1a7247c629
gnu: asymptote: Update to 2.65. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.65.
 2020-03-27 12:20:35 +01:00
Ricardo Wurmus 2ba5253044
gnu: r-multiassayexperiment: Update to 1.12.6. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus 37732212a3
gnu: r-locfit: Update to 1.5-9.4. 
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.4.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus c99880320d
gnu: r-class: Update to 7.3-16. 
* gnu/packages/statistics.scm (r-class): Update to 7.3-16.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus 3345157fa6
gnu: r-xgboost: Update to 1.0.0.2. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus 76d7ce4f45
gnu: r-rjava: Update to 0.9-12. 
* gnu/packages/cran.scm (r-rjava): Update to 0.9-12.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus 84b7c4aa17
gnu: r-sf: Update to 0.9-0. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-0.
[native-inputs]: Add r-knitr.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus 498c887a96
gnu: r-bayestestr: Update to 0.5.3. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3.
[native-inputs]: Add r-knitr.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus 9c189913e9
gnu: r-hdf5r: Update to 1.3.2. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2.
[native-inputs]: Add r-knitr.
 2020-03-27 11:21:13 +01:00
Ricardo Wurmus 6232a36291
gnu: r-ggally: Update to 1.5.0. 
* gnu/packages/cran.scm (r-ggally): Update to 1.5.0.
 2020-03-27 11:21:13 +01:00
Christopher Baines 0a76a4e073
gnu: guix-data-service: Update to 0.0.1-19.d1c243f. 
These changes support the guix-data-service-backup-database and
guix-data-service-create-small-backup scripts. These are shell scripts, so
require coreutils from the build environment at runtime as well as binaries
from postgresql, ephemeralpg and optionally util-linux (for ionice and
renice).

* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f.
[arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the
'install phase to wrap all bin files with some inputs as well.
[inputs]: Add util-linux, include ephemeralpg from native-inputs and switch
postgresql for postgresql-11.
[native-inputs]: Move ephemeralpg to inputs.
 2020-03-26 22:51:36 +00:00
Lars-Dominik Braun 01d5f2c5cd
gnu: Add python-json5. 
* gnu/packages/python-xyz.scm (python-json5): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-26 23:45:41 +01:00
Lars-Dominik Braun aefcfecd84
gnu: Add python-pytest-check-links. 
* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-26 23:45:41 +01:00
Ludovic Courtès be6520e6a5
vm: Distinguish between success and failure of the guest code. 
Fixes <https://bugs.gnu.org/34276>.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.

* gnu/system/vm.scm (expression->derivation-in-linux-vm)[loader]:
Produce '/xchg/.exit-status' file upon success.
* gnu/build/vm.scm (load-in-linux-vm): Check for 'xchg/.exit-status'
once QEMU has completed and respond accordingly.
 2020-03-26 23:45:41 +01:00
Jakub Kądziołka 60eee3e6de
gnu: Add ROPgadget. 
* gnu/packages/cybersecurity.scm: New file.
(ropgadget): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the file.
 2020-03-26 22:53:02 +01:00
Björn Höfling eebaed2b76
gnu: java-tomcat: Update to 8.5.53. 
This fixes CVE-2020-1938 ("Ghostcat").

* gnu/packages/web.scm (java-tomcat): Update to 8.5.53.
[properties]: Add cpe-name.
 2020-03-26 21:39:49 +01:00
Marius Bakke 3089b70d76
gnu: icu4c: Explicitly add patch flags in replacement package. 
This is to prevent a build failure when this gets merged to 'core-updates'
which does not have any patch-flags to inherit.

* gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field.
 2020-03-26 21:15:08 +01:00
Marius Bakke 9ea9ff6b0f
gnu: help2man: Update to 1.47.13. 
* gnu/packages/man.scm (help2man/latest): Update to 1.47.13.
 2020-03-26 20:20:48 +01:00