gnu: Remove pyicoteo.

* gnu/packages/bioinformatics.scm (pyicoteo): Delete variable.
This commit is contained in:
Maxim Cournoyer 2022-04-29 13:36:16 -04:00
parent ba09192168
commit c30ab2c0b4
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@ -5406,45 +5406,6 @@ (define-public proteinortho
large-scale data and can be applied to hundreds of species at once.") large-scale data and can be applied to hundreds of species at once.")
(license license:gpl3+))) (license license:gpl3+)))
(define-public pyicoteo
(package
(name "pyicoteo")
(version "2.0.7")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://bitbucket.org/regulatorygenomicsupf/pyicoteo.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0hz5g8d25lbjy1wpscr490l0lmyvaix893hhax4fxnh1h9w34w8p"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2 ; does not work with Python 3
#:tests? #f)) ; there are no tests
(inputs
(list python2-matplotlib))
(home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo")
(synopsis "Analyze high-throughput genetic sequencing data")
(description
"Pyicoteo is a suite of tools for the analysis of high-throughput genetic
sequencing data. It works with genomic coordinates. There are currently six
different command-line tools:
@enumerate
@item pyicoregion: for generating exploratory regions automatically;
@item pyicoenrich: for differential enrichment between two conditions;
@item pyicoclip: for calling CLIP-Seq peaks without a control;
@item pyicos: for genomic coordinates manipulation;
@item pyicoller: for peak calling on punctuated ChIP-Seq;
@item pyicount: to count how many reads from N experiment files overlap in a
region file;
@item pyicotrocol: to combine operations from pyicoteo.
@end enumerate\n")
(license license:gpl3+)))
(define-public prodigal (define-public prodigal
(package (package
(name "prodigal") (name "prodigal")