gnu: Remove python2-pbcore.

* gnu/packages/bioinformatics.scm (python2-pbcore): Delete variable.
This commit is contained in:
Maxim Cournoyer 2022-04-29 13:36:13 -04:00
parent 8287979669
commit ba09192168
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@ -5285,39 +5285,6 @@ (define-public orfm
(home-page "https://github.com/wwood/OrfM")
(license license:lgpl3+)))
(define-public python2-pbcore
(package
(name "python2-pbcore")
(version "1.2.10")
(source (origin
(method url-fetch)
(uri (pypi-uri "pbcore" version))
(sha256
(base32
"1kjmv891d6qbpp4shhhvkl02ff4q5xlpnls2513sm2cjcrs52f1i"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2 ;pbcore < 2.0 requires Python 2.7
#:phases (modify-phases %standard-phases
(add-after 'unpack 'remove-sphinx-dependency
(lambda _
;; Sphinx is only required for documentation tests, which
;; we do not run; furthermore it depends on python2-sphinx
;; which is no longer maintained.
(substitute* "requirements-dev.txt"
(("^sphinx") ""))
#t)))))
(propagated-inputs
(list python2-cython python2-numpy python2-pysam python2-h5py))
(native-inputs
(list python2-nose python2-pyxb))
(home-page "https://pacificbiosciences.github.io/pbcore/")
(synopsis "Library for reading and writing PacBio data files")
(description
"The pbcore package provides Python APIs for interacting with PacBio data
files and writing bioinformatics applications.")
(license license:bsd-3)))
(define-public prank
(package
(name "prank")