gnu: Add python-htsget.

* gnu/packages/bioinformatics.scm (python-htsget): New variable.
This commit is contained in:
Roel Janssen 2021-05-27 22:50:46 +02:00
parent 167fc141d4
commit a30e616ccc
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@ -846,6 +846,30 @@ (define-public bioawk
intended to behave exactly the same as the original BWK awk.")
(license license:x11)))
(define-public python-htsget
(package
(name "python-htsget")
(version "0.2.5")
(source (origin
(method url-fetch)
(uri (pypi-uri "htsget" version))
(sha256
(base32
"0ic07q85vhw9djf23k57b21my7i5xp400m8gfqgr5gcryqvdr0yk"))))
(build-system python-build-system)
(native-inputs
`(("python-setuptools-scm" ,python-setuptools-scm)))
(propagated-inputs
`(("python-humanize" ,python-humanize)
("python-requests" ,python-requests)
("python-six" ,python-six)))
(home-page "https://pypi.org/project/htsget/")
(synopsis "Python API and command line interface for the GA4GH htsget API")
(description "This package is a client implementation of the GA4GH htsget
protocol. It provides a simple and reliable way to retrieve genomic data from
servers supporting the protocol.")
(license license:asl2.0)))
(define-public python-pybedtools
(package
(name "python-pybedtools")