diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index af1010f853..6f3bc96c9e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -846,6 +846,30 @@ (define-public bioawk intended to behave exactly the same as the original BWK awk.") (license license:x11))) +(define-public python-htsget + (package + (name "python-htsget") + (version "0.2.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "htsget" version)) + (sha256 + (base32 + "0ic07q85vhw9djf23k57b21my7i5xp400m8gfqgr5gcryqvdr0yk")))) + (build-system python-build-system) + (native-inputs + `(("python-setuptools-scm" ,python-setuptools-scm))) + (propagated-inputs + `(("python-humanize" ,python-humanize) + ("python-requests" ,python-requests) + ("python-six" ,python-six))) + (home-page "https://pypi.org/project/htsget/") + (synopsis "Python API and command line interface for the GA4GH htsget API") + (description "This package is a client implementation of the GA4GH htsget +protocol. It provides a simple and reliable way to retrieve genomic data from +servers supporting the protocol.") + (license license:asl2.0))) + (define-public python-pybedtools (package (name "python-pybedtools")