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guix/gnu/packages
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Roel Janssen fdc306879b
gnu: Add delly. 
* gnu/packages/bioinformatics.scm (delly): New variable.
* gnu/packages/patches/delly-use-system-libraries.patch: New file.
* gnu/local.mk: Include delly-use-system-libraries.patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-03-30 10:48:01 -04:00
..
aux-files
bootstrap
patches gnu: Add delly. 2018-03-30 10:48:01 -04:00
abduco.scm
abiword.scm
accessibility.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
acct.scm
acl.scm
ada.scm gnu: Add python2-libadalang. 2018-03-16 22:44:36 +01:00
admin.scm gnu: nmap: Update to 7.70. 2018-03-22 14:40:40 +01:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: gmp-ecm: Update to 7.0.4. 2018-03-20 19:49:46 +01:00
android.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
animation.scm
anthy.scm
apl.scm
apr.scm
aspell.scm
assembly.scm
astronomy.scm
attr.scm
audio.scm gnu: supercollider: Update to 3.9.2. 2018-03-27 04:38:16 +02:00
augeas.scm
autogen.scm
autotools.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
avahi.scm gnu: nss-mdns: Adjust Avahi socket file name. 2018-03-18 00:02:06 +01:00
avr.scm
axoloti.scm
backup.scm
base.scm Revert "gnu: Use patched static bash in glibc replacement." 2018-03-14 16:28:22 +01:00
bash.scm gnu: bash-completion: Update to 2.8. 2018-03-19 14:44:13 +01:00
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: Add r-regioner. 2018-03-30 10:47:57 -04:00
bioinformatics.scm gnu: Add delly. 2018-03-30 10:48:01 -04:00
bison.scm
bittorrent.scm
boost.scm gnu: Add boost-sync. 2018-03-22 12:30:39 +01:00
bootloaders.scm gnu: Add u-boot-pine64-plus. 2018-03-24 22:15:12 +03:00
bootstrap.scm gnu: bootstrap: Remove unneeded import. 2018-03-27 14:51:44 +02:00
build-tools.scm Merge branch 'master' into staging 2018-03-18 01:09:25 +01:00
busybox.scm
c.scm
calcurse.scm gnu: calcurse: Update to 4.3.0. 2018-03-14 09:10:47 +01:00
calendar.scm gnu: libical: Update to 3.0.3. 2018-03-12 17:28:14 +01:00
ccache.scm gnu: ccache: Update to 3.4.2. 2018-03-27 03:26:47 +02:00
cdrom.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
certs.scm gnu: nss, nss-certs: Update to 3.36. 2018-03-12 17:38:55 +01:00
check.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
chemistry.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
chez.scm
ci.scm gnu: cuirass: Update to 326264c. 2018-03-25 00:19:24 +01:00
cinnamon.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
cmake.scm
cobol.scm
code.scm gnu: Use the CMake build system's #:build-type key. 2018-03-17 16:37:28 +01:00
commencement.scm Revert "gnu: Add replacement for static-bash-for-glibc." 2018-03-14 16:28:22 +01:00
compression.scm gnu: zstd: Update to 1.3.4. 2018-03-27 22:08:57 +02:00
compton.scm
conkeror.scm
conky.scm
connman.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
cook.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: Add r-idr. 2018-03-29 14:26:44 +02:00
cross-base.scm
crypto.scm gnu: Add botan. 2018-03-29 14:40:34 -04:00
cryptsetup.scm
cups.scm gnu: hplip: Update to 3.18.3. 2018-03-26 19:50:43 -04:00
curl.scm gnu: curl: Update replacement to 7.59.0 [security fixes]. 2018-03-14 16:48:03 +01:00
cyrus-sasl.scm
databases.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
datamash.scm gnu: datamash: Update to 1.3. 2018-03-18 00:02:06 +01:00
datastructures.scm
dav.scm
dc.scm
debian.scm gnu: Add debootstrap. 2018-03-12 21:54:44 +02:00
debug.scm gnu: c-reduce: Use HTTPS home page. 2018-03-07 15:37:11 +01:00
dejagnu.scm
dico.scm
dictionaries.scm gnu: translate-shell: Update to 0.9.6.7. 2018-03-26 22:47:16 +03:00
digest.scm
direct-connect.scm
disk.scm gnu: Add duperemove. 2018-03-29 15:17:35 +02:00
display-managers.scm
django.scm gnu: python-django-crispy-forms: Update to 1.7.2. 2018-03-27 03:26:46 +02:00
djvu.scm
dns.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
docbook.scm
docker.scm
documentation.scm
dunst.scm gnu: dunst: Update to 1.3.1. 2018-03-24 19:36:03 +03:00
dvtm.scm
ebook.scm
ed.scm
education.scm
electronics.scm
elf.scm Revert "Revert "gnu: patchelf: Update argument phase."" 2018-03-20 00:20:59 +01:00
elixir.scm
emacs.scm gnu: emacs-org, emacs-org-contrib: Update to 9.1.9. 2018-03-27 23:29:52 +02:00
embedded.scm gnu: fc-host-tools: Update to version 8. 2018-03-25 17:02:10 +02:00
emulators.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
enchant.scm
engineering.scm gnu: Use the CMake build system's #:build-type key. 2018-03-17 16:37:28 +01:00
enlightenment.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
file.scm
finance.scm
firmware.scm gnu: arm-trusted-firmware-pine64-plus: New variable. 2018-03-24 22:15:11 +03:00
flashing-tools.scm gnu: flashrom: Support libusb versions >1.0.21. 2018-03-25 20:01:01 +02:00
flex.scm
fltk.scm
fonts.scm gnu: culmus: Rename to font-culmus. 2018-03-28 14:58:34 +05:30
fontutils.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
forth.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
fpga.scm
freedesktop.scm Merge branch 'staging' 2018-03-20 14:13:05 +01:00
freeipmi.scm
fribidi.scm gnu: fribidi: Update to 1.0.2. 2018-03-23 11:32:16 +01:00
ftp.scm gnu: filezilla: Update to 3.31.0. 2018-03-25 20:01:01 +02:00
fvwm.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
game-development.scm gnu: tiled: Update to 1.1.3. 2018-03-13 20:33:42 -04:00
games.scm gnu: gzdoom: Update to 3.3.0. 2018-03-27 03:26:48 +02:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
geo.scm gnu: Add r-ggmap. 2018-03-15 10:57:52 -04:00
gettext.scm
ghostscript.scm
gimp.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
gkrellm.scm
gl.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
glib.scm gnu: python2-gobject@2: Update to 2.28.7 2018-03-07 14:57:10 +01:00
gnome.scm gnu: evince: Update to 3.28.0. 2018-03-26 18:24:55 +02:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
gnupg.scm gnu: jetring: Update to 0.27. 2018-03-27 03:26:47 +02:00
gnustep.scm
gnuzilla.scm gnu: icecat: Add fix for CVE-2018-5148. 2018-03-27 21:08:15 -04:00
gobby.scm
golang.scm gnu: Add go-github-com-hashicorp-hcl. 2018-03-17 23:04:29 +00:00
gperf.scm
gprolog.scm
gps.scm gnu: gpscorrelate: Declare a source file-name. 2018-03-13 20:17:10 +02:00
graph.scm gnu: python-plotly: Update to 2.4.1. 2018-03-27 03:26:46 +02:00
graphics.scm gnu: Use the CMake build system's #:build-type key. 2018-03-17 16:37:28 +01:00
graphviz.scm gnu: python-graphviz: Update to 0.8.2. 2018-03-25 00:36:35 +01:00
groff.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: gtkspell3: Add enchant. 2018-03-25 17:00:37 +02:00
guile-wm.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
guile.scm gnu: Remove unnecessary import. 2018-03-27 14:51:44 +02:00
gv.scm
gxmessage.scm
ham-radio.scm
haskell-check.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
haskell-crypto.scm gnu: ghc-cryptonite: Update to 0.25. 2018-03-26 20:41:50 +02:00
haskell-web.scm gnu: Add ghc-aeson-for-pandoc-1. 2018-03-13 20:01:54 +01:00
haskell.scm gnu: Remove Haskell packages provided by GHC. 2018-03-27 11:24:20 +02:00
hexedit.scm
hugs.scm
hurd.scm
ibus.scm
icu4c.scm
idris.scm gnu: idris: Provide the right versions of dependencies. 2018-03-15 23:46:16 +01:00
idutils.scm
image-processing.scm
image-viewers.scm gnu: geeqie: Update to 1.4. 2018-03-26 09:54:46 +02:00
image.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
imagemagick.scm gnu: imagemagick: Update to 6.9.9-39. 2018-03-20 01:09:16 +01:00
indent.scm
inklingreader.scm
inkscape.scm gnu: inkscape: Build with potrace support. 2018-03-17 05:06:32 +05:30
irc.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
iso-codes.scm
java.scm gnu: classpath: Add aarch64-linux support. 2018-03-26 12:21:33 +03:00
javascript.scm
jemalloc.scm
jrnl.scm
julia.scm gnu: arpack-ng: Update to 3.5.0; use 3.3.0 for julia. 2018-03-12 16:09:24 +01:00
kde-frameworks.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
kde.scm gnu: libkomparediff2: Update to 17.12.3. 2018-03-27 03:26:47 +02:00
kerberos.scm
key-mon.scm
kodi.scm
language.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
ld-wrapper.in
ldc.scm
lego.scm gnu: leocad: Use HTTPS home page. 2018-03-20 19:49:47 +01:00
less.scm gnu: less: Update to 530. 2018-03-25 00:29:59 +01:00
lesstif.scm
libbsd.scm
libcanberra.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
libdaemon.scm
libedit.scm
libevent.scm gnu: 'autoconf-wrapper' is no longer a procedure. 2018-03-09 23:24:34 +01:00
libffcall.scm
libffi.scm gnu: ruby-ffi: Update to 1.9.23. 2018-03-25 00:36:35 +01:00
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: libreoffice: Update to 5.4.6.2. 2018-03-26 19:50:46 -04:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm gnu: libusb4java: Adjust for building with libusb 1.0.22. 2018-03-29 12:26:38 +02:00
license.scm
lighting.scm
linux.scm gnu: radeontop: Update to 1.1. 2018-03-27 03:26:47 +02:00
lirc.scm
lisp.scm gnu: clisp: Update license. 2018-03-25 09:40:11 +03:00
llvm.scm
logging.scm gnu: 'autoconf-wrapper' is no longer a procedure. 2018-03-09 23:24:34 +01:00
lolcode.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
lout.scm
lsof.scm
lua.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
lxde.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
lxqt.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
m4.scm
machine-learning.scm
mail.scm gnu: mu: Fix tests failures triggered by DST. 2018-03-28 17:14:40 +02:00
make-bootstrap.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
man.scm gnu: man-db: Update to 2.8.2. 2018-03-14 16:48:04 +01:00
markup.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
marst.scm
mate.scm gnu: mate-themes: Update to 3.22.15. 2018-03-25 20:01:01 +02:00
maths.scm gnu: Add tcalc. 2018-03-28 17:13:00 +02:00
maven.scm
mc.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
mcrypt.scm
medical.scm
mes.scm
messaging.scm gnu: pybitmessage: Update to 0.6.3.2 [security fixes]. 2018-03-29 22:43:37 +02:00
microcom.scm
mingw.scm gnu: mingw-w64: Update to 5.0.3. 2018-03-12 04:57:52 +01:00
moe.scm
monitoring.scm gnu: Add python-prometheus-client. 2018-03-17 20:44:50 +00:00
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: mpd: Update to 0.20.18. 2018-03-21 18:26:25 -04:00
mpi.scm gnu: hwloc@1: Update to 1.11.10. 2018-03-26 18:24:55 +02:00
mtools.scm
multiprecision.scm
music.scm gnu: hydrogen: Update to 1.0.0-beta1. 2018-03-29 22:40:30 +02:00
musl.scm
nano.scm gnu: nano: Update to 2.9.5. 2018-03-29 16:08:06 +03:00
ncdu.scm
ncurses.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
netpbm.scm
nettle.scm
networking.scm gnu: Add python2-ipy. 2018-03-25 18:51:03 +02:00
nfs.scm
nickle.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
nim.scm
ninja.scm
node.scm gnu: node: Update to 9.10.0. 2018-03-28 23:33:53 +02:00
noweb.scm
ntp.scm gnu: ntp: Update to 4.2.8p11 [security-fixes]. 2018-03-28 14:59:47 -04:00
nutrition.scm
nvi.scm
ocaml.scm gnu: coq-flocq: Use predictable source URI. 2018-03-23 11:32:15 +01:00
ocr.scm
onc-rpc.scm gnu: libtirpc: Update to 1.0.3. 2018-03-19 13:25:27 +01:00
openbox.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
openldap.scm
openstack.scm gnu: python-oslo.utils: Update to 3.36.0. 2018-03-19 13:24:28 +01:00
orpheus.scm
ots.scm
package-management.scm tests: Add tests for "guix pack". 2018-03-24 03:04:07 +01:00
parallel.scm gnu: parallel: Update to 20180322. 2018-03-23 11:32:15 +01:00
password-utils.scm gnu: Add fpm2. 2018-03-29 18:43:09 +02:00
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm gnu: mupdf: Fix CVE-2018-{6544,1000051}. 2018-03-27 19:00:03 -04:00
pem.scm
perl-check.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
perl-web.scm gnu: Add perl-uri-escape. 2018-03-26 22:47:16 +03:00
perl.scm gnu: perl-text-simpletable: Update to 2.04. 2018-03-25 00:36:31 +01:00
photo.scm gnu: perl-image-exiftool: Update to 10.80. 2018-03-26 18:24:55 +02:00
php.scm
pkg-config.scm
plotutils.scm
polkit.scm
popt.scm
pretty-print.scm
profiling.scm
protobuf.scm gnu: python-protobuf: Update to 3.5.2. 2018-03-17 16:37:21 +01:00
pth.scm
pulseaudio.scm Merge branch 'master' into staging 2018-03-18 01:09:25 +01:00
pumpio.scm
pure.scm gnu: Add pure. 2018-03-25 17:02:01 +02:00
pv.scm
python-crypto.scm gnu: python-cryptography: Update to 2.2.1. 2018-03-22 14:02:11 +01:00
python-web.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
python.scm gnu: Add python-debug. 2018-03-29 15:17:35 +02:00
qt.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
ragel.scm
rails.scm
ratpoison.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
rdesktop.scm gnu: Use the CMake build system's #:build-type key. 2018-03-17 16:37:28 +01:00
rdf.scm
re2c.scm
readline.scm
regex.scm
robotics.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: ruby-2.2: Update to 2.2.10. 2018-03-30 12:27:57 +10:00
rush.scm
rust.scm gnu: rust: Update rust to 1.24.1. 2018-03-30 15:46:53 +02:00
samba.scm gnu: talloc: Update to 2.1.12. 2018-03-22 14:16:36 +01:00
sawfish.scm gnu: 'autoconf-wrapper' is no longer a procedure. 2018-03-09 23:24:34 +01:00
scanner.scm
scheme.scm gnu: Add tinyscheme. 2018-03-21 18:38:23 +01:00
screen.scm
scribus.scm
scsi.scm
sdcc.scm
sdl.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
search.scm
security-token.scm
selinux.scm
serialization.scm gnu: yaml-cpp: Update to 0.6.1. 2018-03-22 12:30:46 +01:00
serveez.scm
shells.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
speech.scm
spice.scm gnu: usbredir: Build without '-Werror'. 2018-03-26 09:38:29 +02:00
ssh.scm gnu: autossh: Update to 1.4f. 2018-03-25 00:36:30 +01:00
sssd.scm gnu: sssd: Update to 1.16.1. 2018-03-11 06:42:57 +01:00
stalonetray.scm
statistics.scm gnu: r-lme4: Update to 1.1-16. 2018-03-29 17:45:45 +02:00
storage.scm
suckless.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
swig.scm
sync.scm
syncthing.scm gnu: Fix more ‘filesystem’ spellings. 2018-03-17 16:37:19 +01:00
syndication.scm gnu: newsboat: Update to 2.11. 2018-03-25 22:57:19 +02:00
synergy.scm
task-management.scm
tbb.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
tcl.scm
telephony.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
terminals.scm gnu: tilda: Update to 1.4.1. 2018-03-19 14:22:28 +02:00
terraform.scm gnu: Add terraform-docs. 2018-03-17 23:04:29 +00:00
tex.scm gnu: lyx: Use HTTPS home page. 2018-03-27 22:00:14 +02:00
texinfo.scm
text-editors.scm gnu: vis: Update to 0.5. 2018-03-27 03:26:45 +02:00
textutils.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
time.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
tls.scm gnu: mbedtls-apache: Update to 2.7.2. 2018-03-29 21:30:15 +02:00
tmux.scm
tor.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
toys.scm
tryton.scm
tv.scm gnu: tvtime: Fix build. 2018-03-24 19:36:03 +03:00
uml.scm
unrtf.scm
upnp.scm
uucp.scm
valgrind.scm
version-control.scm gnu: Remove Haskell packages provided by GHC. 2018-03-27 11:24:20 +02:00
video.scm gnu: Add twitchy. 2018-03-26 22:47:16 +03:00
vim.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
virtualization.scm gnu: libosinfo: Update usb.ids. 2018-03-21 17:00:11 +01:00
vpn.scm gnu: vpnc-scripts: Declare a source file-name. 2018-03-13 21:48:28 +02:00
vulkan.scm gnu: shaderc: Clean up package arguments. 2018-03-17 23:15:34 +02:00
w3m.scm
wdiff.scm
web-browsers.scm gnu: links: Update to 2.15. 2018-03-25 00:36:30 +01:00
web.scm gnu: r-curl: Update to 3.2. 2018-03-29 17:36:57 +02:00
webkit.scm gnu: webkitgtk: Use HTTPS for home page. 2018-03-14 18:23:46 +01:00
wget.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
wicd.scm
wine.scm gnu: Fix common unquote typos. 2018-03-17 16:37:27 +01:00
wm.scm gnu: awesome: Remove obsolete snippet. 2018-03-29 21:30:15 +02:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: xcb-util-xrm: Update to 1.3. 2018-03-29 21:30:15 +02:00
xfce.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
xfig.scm
xiph.scm Merge branch 'master' into staging 2018-03-18 01:09:25 +01:00
xml.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
xnee.scm
xorg.scm gnu: xf86-video-ati: Update to 18.0.1. 2018-03-28 21:23:21 +02:00
zile.scm gnu: 'autoconf-wrapper' is no longer a procedure. 2018-03-09 23:24:34 +01:00