guix/gnu/packages
Ricardo Wurmus f310b06685
gnu: nanopolish: Fix script wrapping.
* gnu/packages/bioinformatics.scm (nanopolish)[arguments]: Fix wrap-programs
phase.
[inputs]: Add Guile for wrap-script; add bioperl and perl-getopt-long for Perl
scripts.
2021-02-19 23:35:04 +01:00
..
aux-files gnu: Add linux-libre 5.11. 2021-02-16 16:01:48 -05:00
patches gnu: ruby-rubocop: Update to 1.10.0. 2021-02-17 16:16:37 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: isc-dhcp: Update bundled BIND to 9.11.28 [fixes CVE-2020-8625]. 2021-02-18 13:25:56 -05:00
adns.scm
agda.scm
aidc.scm
algebra.scm
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm gnu: Add stackistry. 2021-02-19 11:05:34 +01:00
attr.scm
audio.scm gnu: Add butt. 2021-02-19 16:51:17 -05:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm
base.scm
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm gnu: python-locust: Update to 1.4.3. 2021-02-19 10:01:02 -05:00
bioconductor.scm gnu: Add r-chromvar. 2021-02-18 15:57:52 +01:00
bioinformatics.scm gnu: nanopolish: Fix script wrapping. 2021-02-19 23:35:04 +01:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm
bootstrap.scm
browser-extensions.scm
build-tools.scm
busybox.scm
c.scm
calcurse.scm
calendar.scm gnu: remind: Update to 3.3.5. 2021-02-16 16:06:04 +08:00
ccache.scm
cdrom.scm
cedille.scm
certs.scm
check.scm
chemistry.scm
chez.scm
chicken.scm
chromium.scm
ci.scm gnu: cuirass: Update to 0.0.1-69.860fffa. 2021-02-17 17:22:28 +01:00
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm gnu: cmake-shared: Update to 1.1.0-32. 2021-02-15 18:59:27 +01:00
cobol.scm
code.scm
commencement.scm
compression.scm gnu: xarchiver: Update to 0.5.4.17. 2021-02-15 18:09:39 +01:00
compton.scm gnu: picom: Fix man pages generation. 2021-02-16 16:37:39 +08:00
configuration-management.scm
conky.scm
connman.scm
convmv.scm
cook.scm
coq.scm
cpio.scm
cpp.scm gnu: gperftools: Update to 2.8.1. 2021-02-18 13:03:48 -05:00
cppi.scm
cran.scm gnu: r-shiny: Update to 1.6.0. 2021-02-18 17:52:05 +01:00
crates-graphics.scm gnu: Add rust-rav1e-0.4 and friends. 2021-02-13 11:50:56 +01:00
crates-gtk.scm
crates-io.scm gnu: Add rust-quickcheck-macros-1. 2021-02-16 23:36:15 +01:00
cross-base.scm
crypto.scm
cryptsetup.scm
cups.scm
curl.scm
cvassistant.scm
cybersecurity.scm gnu: ropgadget: Update to 6.5. 2021-02-15 18:09:39 +01:00
cyrus-sasl.scm
databases.scm gnu: apache-arrow: Update to 3.0.0. 2021-02-16 13:38:37 -05:00
datamash.scm
datastructures.scm gnu: tllist: Update to 1.0.5. 2021-02-15 18:09:39 +01:00
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm
dejagnu.scm
dhall.scm
dico.scm
dictionaries.scm
diffoscope.scm
digest.scm
direct-connect.scm
disk.scm gnu: dosfstools: Fetch sources from git. 2021-02-15 18:09:39 +01:00
display-managers.scm
distributed.scm gnu: boinc-server: Use a supported version of OpenSSL. 2021-02-17 16:20:36 -05:00
django.scm
djvu.scm
dlang.scm
dns.scm gnu: BIND: Point out where to find the release notes. 2021-02-18 13:25:56 -05:00
docbook.scm
docker.scm
documentation.scm
drones.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm
efi.scm
electronics.scm gnu: Add xoscope. 2021-02-19 15:45:18 -05:00
elf.scm
elixir.scm
elm.scm
emacs-xyz.scm gnu: emacs-elpy: Fix build. 2021-02-18 15:37:34 -05:00
emacs.scm
embedded.scm
emulators.scm
enchant.scm
engineering.scm
enlightenment.scm
entr.scm
erlang.scm
esolangs.scm
fabric-management.scm
fcitx.scm
fcitx5.scm
figlet.scm
file-systems.scm gnu: exfatprogs: Update to 1.1.0. 2021-02-15 17:23:55 +01:00
file.scm
finance.scm
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: font-dseg: Update to 0.46. 2021-02-15 18:09:38 +01:00
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm gnu: python-pyxdg: Update to 0.27. 2021-02-15 09:29:33 +02:00
freeipmi.scm gnu: freeipmi: Update to 1.6.7. 2021-02-18 09:38:17 +02:00
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm
games.scm gnu: Add vitetris. 2021-02-18 22:09:47 +01:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genealogy.scm
genimage.scm
geo.scm
gettext.scm
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm
glib.scm
gnome-xyz.scm
gnome.scm gnu: komikku: Update to 0.26.1. 2021-02-15 18:59:27 +01:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm
gnustep.scm
gnuzilla.scm
gobby.scm
golang.scm gnu: Add go-github-com-tekwizely-go-parsing. 2021-02-15 11:35:28 +01:00
gperf.scm
gpodder.scm
gps.scm
graph.scm
graphics.scm
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: Add GtkDatabox. 2021-02-19 15:45:18 -05:00
guile-wm.scm
guile-xyz.scm gnu: guile-simple-zmq: Update to 0.0.0-7.c8b1fa0. 2021-02-18 15:58:57 +01:00
guile.scm
gv.scm
gxmessage.scm
hardware.scm
haskell-apps.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm
haskell.scm
heads.scm
hexedit.scm
hugs.scm
hunspell.scm
hurd.scm
hyperledger.scm
i2p.scm gnu: i2pd: Update to 2.36.0. 2021-02-16 18:07:34 +08:00
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm
image.scm
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm
ipfs.scm
irc.scm
iso-codes.scm
jami.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java.scm gnu: java-args4j: Use a source file-name. 2021-02-16 11:18:52 +02:00
javascript.scm gnu: mujs: Update to 1.1.0. 2021-02-18 10:03:16 +02:00
jemalloc.scm
jose.scm
jrnl.scm
julia-xyz.scm
julia.scm
jupyter.scm
kawa.scm
kde-frameworks.scm
kde-internet.scm
kde-multimedia.scm
kde-pim.scm
kde-plasma.scm
kde-systemtools.scm
kde-utils.scm
kde.scm
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm
linux.scm gnu: linux-libre 5.4: Update to 5.4.99. 2021-02-18 00:45:07 -05:00
lirc.scm
lisp-xyz.scm gnu: Add cl-glsl-packing. 2021-02-19 09:11:28 +01:00
lisp.scm
llvm.scm
logging.scm
logo.scm
loko.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: python-scikit-learn: Update to 0.24.1. 2021-02-19 23:24:05 +01:00
magic-wormhole.scm
mail.scm
make-bootstrap.scm
man.scm gnu: man-db: Update to 2.9.4. 2021-02-15 18:09:40 +01:00
markup.scm
marst.scm
mastodon.scm
mate.scm
maths.scm
matrix.scm
maven-parent-pom.scm
maven.scm
mc.scm
mcrypt.scm
medical.scm
mercury.scm
mes.scm
messaging.scm
microcom.scm
mingw.scm
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: Add strawberry. 2021-02-17 10:13:06 +01:00
musl.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: gandi.cli: Update to 1.6. 2021-02-16 17:11:27 +08:00
nfs.scm
nickle.scm
nicotine.scm
nim.scm
ninja.scm
node-xyz.scm
node.scm
noweb.scm
nss.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: Add ocaml-llvm. 2021-02-16 16:52:55 +01:00
ocr.scm gnu: tesseract-ocr: Update to 4.1.1-1.97079fa 2021-02-13 15:05:23 +01:00
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openpgp.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm
pantheon.scm
parallel.scm gnu: slurm-drmaa: Update to 1.1.2. 2021-02-13 23:36:12 +01:00
pascal.scm
password-utils.scm
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm
pem.scm
pep.scm
perl-check.scm
perl-compression.scm
perl-maths.scm gnu: Add perl-math-cephes. 2021-02-19 23:14:56 +01:00
perl-web.scm
perl.scm gnu: Add perl-statistics-pca. 2021-02-19 23:14:59 +01:00
perl6.scm
phabricator.scm
photo.scm
php.scm
piet.scm
pkg-config.scm
plotutils.scm
poedit.scm
polkit.scm
popt.scm
presentation.scm
pretty-print.scm
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
python-build.scm
python-check.scm gnu: Add python-pytest-astropy. 2021-02-19 11:05:33 +01:00
python-compression.scm
python-crypto.scm gnu: python-keyring: Make tests skippable. 2021-02-15 09:29:33 +02:00
python-science.scm
python-web.scm gnu: python-geventhttpclient: Adjust to build with updated gevent. 2021-02-19 10:01:01 -05:00
python-xyz.scm gnu: python-psutil: Update to 5.8.0. 2021-02-19 10:01:01 -05:00
python.scm
qt.scm gnu: materialdecoration: Update to 1.1.0-9. 2021-02-15 18:59:27 +01:00
radio.scm gnu: wsjtx: Update to 2.3.0. 2021-02-15 21:02:26 +01:00
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
rednotebook.scm
regex.scm
robotics.scm
rpc.scm gnu: apache-thrift: Update to 0.14.0. 2021-02-16 13:38:37 -05:00
rrdtool.scm
rsync.scm
ruby.scm gnu: ruby-rubocop: Update to 1.10.0. 2021-02-17 16:16:37 +02:00
rush.scm
rust-apps.scm gnu: Add agate. 2021-02-15 13:35:03 +01:00
rust.scm gnu: Add Rust 1.50. 2021-02-13 16:57:50 +01:00
sagemath.scm
samba.scm
sawfish.scm
scanner.scm gnu: sane-backends-minimal: Update to 1.0.32. 2021-02-15 17:23:55 +01:00
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdl.scm
search.scm
security-token.scm
selinux.scm
sequoia.scm
serialization.scm
serveez.scm
shells.scm gnu: nushell: Update to 0.27.1. 2021-02-19 10:42:05 +01:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
sphinx.scm
spice.scm
sqlite.scm
squirrel.scm
ssh.scm
sssd.scm
stalonetray.scm
statistics.scm gnu: r-with-tests: Update to 4.0.4. 2021-02-15 17:05:08 +01:00
stb.scm
stenography.scm
storage.scm
suckless.scm
swig.scm
sync.scm
syncthing.scm
syndication.scm
synergy.scm
task-management.scm
task-runners.scm gnu: Add run. 2021-02-15 11:37:58 +01:00
tbb.scm
tcl.scm
telegram.scm gnu: webrtc-for-telegram-desktop: Adjust native inputs. 2021-02-18 21:16:06 +01:00
telephony.scm gnu: libtgvoip: Replace libopusenc with opus. 2021-02-18 15:51:01 +01:00
terminals.scm gnu: alacritty: Add comment. 2021-02-16 22:58:10 +01:00
terraform.scm
tex.scm gnu: texlive-arev: Fix typo. 2021-02-16 14:45:19 +00:00
texinfo.scm
text-editors.scm gnu: ghostwriter: Update to 2.0.0-rc4. 2021-02-15 20:35:47 -05:00
textutils.scm
time.scm gnu: python-tzlocal: Update to 2.1. 2021-02-15 09:29:30 +02:00
tls.scm
tmux.scm
tor.scm gnu: tor: Update to 0.4.5.6. 2021-02-15 20:00:25 +01:00
toys.scm
tryton.scm
tv.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm
video.scm
vim.scm
virtualization.scm
visidata.scm
vlang.scm
vnc.scm
vpn.scm gnu: Add openconnect-sso. 2021-02-15 11:34:16 +02:00
vulkan.scm
w3m.scm Revert "gnu: w3m: Update to 0.5.3+git20210102." 2021-02-15 18:29:29 +01:00
wdiff.scm
web-browsers.scm
web.scm gnu: esbuild: Update to 0.8.47. 2021-02-18 20:19:43 +08:00
webkit.scm gnu: WebKitGTK: Update to 2.30.5 [fixes CVE-2020-13558]. 2021-02-16 17:54:07 -05:00
wget.scm
wicd.scm
wine.scm
wireservice.scm
wm.scm
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm
xfce.scm gnu: xfce4-kbdleds-plugin: Remove package. 2021-02-14 16:02:50 -05:00
xfig.scm
xiph.scm
xml.scm
xnee.scm
xorg.scm
zile.scm
zwave.scm