1259 lines
50 KiB
Scheme
1259 lines
50 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
|
||
;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
|
||
;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
|
||
;;;
|
||
;;; This file is part of GNU Guix.
|
||
;;;
|
||
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
||
;;; under the terms of the GNU General Public License as published by
|
||
;;; the Free Software Foundation; either version 3 of the License, or (at
|
||
;;; your option) any later version.
|
||
;;;
|
||
;;; GNU Guix is distributed in the hope that it will be useful, but
|
||
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
||
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||
;;; GNU General Public License for more details.
|
||
;;;
|
||
;;; You should have received a copy of the GNU General Public License
|
||
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
|
||
|
||
(define-module (gnu packages julia-xyz)
|
||
#:use-module ((guix licenses) #:prefix license:)
|
||
#:use-module (guix packages)
|
||
#:use-module (guix git-download)
|
||
#:use-module (guix build-system julia)
|
||
#:use-module (gnu packages gcc)
|
||
#:use-module (gnu packages maths)
|
||
#:use-module (gnu packages tls))
|
||
|
||
(define-public julia-abstractffts
|
||
(package
|
||
(name "julia-abstractffts")
|
||
(version "1.0.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaMath/AbstractFFTS.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required for tests
|
||
`(("julia-unitful" ,julia-unitful)))
|
||
(home-page "https://github.com/JuliaGPU/Adapt.jl")
|
||
(synopsis "General framework for fast Fourier transforms (FFTs)")
|
||
(description "This package allows multiple FFT packages to co-exist with
|
||
the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
|
||
mainly not intended to be used directly. Instead, developers of packages that
|
||
implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
|
||
types/functions defined in AbstractFFTs.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-adapt
|
||
(package
|
||
(name "julia-adapt")
|
||
(version "3.1.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaGPU/Adapt.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1lks6k3a1gvwlplld47nh6xfy3nnlpc0vhkzg6zg0qn33qdmavrg"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaGPU/Adapt.jl")
|
||
(synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
|
||
(description "This Julia package provides the @code{adapt(T, x)} function
|
||
acts like @code{convert(T, x)}, but without the restriction of returning a
|
||
@code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
|
||
be GPU compatible without throwing away the wrapper.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-benchmarktools
|
||
(package
|
||
(name "julia-benchmarktools")
|
||
(version "0.5.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaCI/BenchmarkTools.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0nsx21m3i5h22lkgyrmfj6r085va6ag40khwssqs8y7l0wz98lvp"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs `(("julia-json" ,julia-json)))
|
||
(home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
|
||
(synopsis "Benchmarking framework for the Julia language")
|
||
(description "@code{BenchmarkTools.jl} makes performance tracking of Julia
|
||
code easy by supplying a framework for writing and running groups of
|
||
benchmarks as well as comparing benchmark results.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-bufferedstreams
|
||
(package
|
||
(name "julia-bufferedstreams")
|
||
(version "1.0.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/BioJulia/BufferedStreams.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
|
||
(build-system julia-build-system)
|
||
;; The package is old and tests are using undefined functions. They also
|
||
;; freeze, see
|
||
;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
|
||
(arguments
|
||
'(#:tests? #f
|
||
#:julia-package-name "BufferedStreams"))
|
||
(propagated-inputs `(("julia-compat" ,julia-compat)))
|
||
(home-page "https://github.com/BioJulia/BufferedStreams.jl")
|
||
(synopsis "Fast composable IO streams")
|
||
(description "@code{BufferedStreams.jl} provides buffering for IO
|
||
operations. It can wrap any @code{IO} type automatically making incremental
|
||
reading and writing faster.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-calculus
|
||
(package
|
||
(name "julia-calculus")
|
||
(version "0.5.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaMath/Calculus.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaMath/Calculus.jl")
|
||
(synopsis "Common utilities for automatic differentiation")
|
||
(description "This package provides tools for working with the basic
|
||
calculus operations of differentiation and integration. The @code{Calculus}
|
||
package produces approximate derivatives by several forms of finite
|
||
differencing or produces exact derivative using symbolic differentiation. It
|
||
can also be used to compute definite integrals by different numerical
|
||
methods.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-chainrules
|
||
(package
|
||
(name "julia-chainrules")
|
||
(version "0.7.54")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/ChainRules.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1x4w71v8cw0vpba47h8f5xq4gyjfxbcvayzf7m41yg8gf49s9pkf"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required for test
|
||
`(("julia-chainrulestestutils" ,julia-chainrulestestutils)
|
||
("julia-finitedifferences" ,julia-finitedifferences)
|
||
("julia-nanmath" ,julia-nanmath)
|
||
("julia-specialfunctions" ,julia-specialfunctions)))
|
||
(propagated-inputs
|
||
`(("julia-chainrulescore" ,julia-chainrulescore)
|
||
("julia-compat" ,julia-compat)
|
||
("julia-reexport" ,julia-reexport)
|
||
("julia-requires" ,julia-requires)))
|
||
(home-page "https://github.com/JuliaDiff/ChainRules.jl")
|
||
(synopsis "Common utilities for automatic differentiation")
|
||
(description "The is package provides a variety of common utilities that
|
||
can be used by downstream automatic differentiation (AD) tools to define and
|
||
execute forward-, reverse-, and mixed-mode primitives.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-chainrulescore
|
||
(package
|
||
(name "julia-chainrulescore")
|
||
(version "0.9.29")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/ChainRulesCore.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1k0iayw39n1ikkkhvyi4498vsnzc94skqs41gnd15632gxjfvki4"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required for tests
|
||
`(("julia-benchmarktools" ,julia-benchmarktools)
|
||
("julia-staticarrays" ,julia-staticarrays)))
|
||
(propagated-inputs
|
||
`(("julia-compat" ,julia-compat)))
|
||
(home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
|
||
(synopsis "Common utilities used by downstream automatic differentiation tools")
|
||
(description "The package provides a light-weight dependency for defining
|
||
sensitivities for functions without the need to depend on ChainRules itself.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-chainrulestestutils
|
||
(package
|
||
(name "julia-chainrulestestutils")
|
||
(version "0.6.4")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1pzs947adnb3cx1qd0cxp2fidk9szz0zsqbas90z1lhydykkvkil"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-chainrulescore" ,julia-chainrulescore)
|
||
("julia-compat" ,julia-compat)
|
||
("julia-finitedifference" ,julia-finitedifferences)))
|
||
(home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
|
||
(synopsis "Common utilities used by downstream automatic differentiation tools")
|
||
(description "This package is designed to help in testing
|
||
@code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
|
||
entry points are @code{ChainRulesTestUtils.frule_test},
|
||
@code{ChainRulesTestUtils.rrule_test}, and
|
||
@code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
|
||
rules against numerical differentiation (using @code{FiniteDifferences.jl}).
|
||
|
||
@code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
|
||
can be a test-only dependency, allowing it to have potentially heavy
|
||
dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-colors
|
||
(package
|
||
(name "julia-colors")
|
||
(version "0.12.6")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaGraphics/Colors.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "156zsszgwh6bmznsan0zyha6yvcxw3c5mvc5vr2qfsgxbyh36ln6"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-colortypes" ,julia-colortypes)
|
||
("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
|
||
("julia-reexport" ,julia-reexport)))
|
||
(home-page "https://github.com/JuliaGraphics/Colors.jl")
|
||
(synopsis "Tools for dealing with color")
|
||
(description "This package provides a wide array of functions for dealing
|
||
with color. This includes conversion between colorspaces, measuring distance
|
||
between colors, simulating color blindness, parsing colors, and generating
|
||
color scales for graphics.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-colortypes
|
||
(package
|
||
(name "julia-colortypes")
|
||
(version "0.10.12")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaGraphics/ColorTypes.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "176hr3qbz7lncmykks2qaj3cqisnzim7wi5jwsca9ld26wwyvyqq"))))
|
||
(arguments
|
||
'(#:tests? #f)) ;require Documenter, not packaged yet
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
|
||
(home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
|
||
(synopsis "Basic color types and constructor")
|
||
(description "This minimalistic package serves as the foundation for
|
||
working with colors in Julia. It defines basic color types and their
|
||
constructors, and sets up traits and show methods to make them easier to work
|
||
with.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-commonsubexpressions
|
||
(package
|
||
(name "julia-commonsubexpressions")
|
||
(version "0.3.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/rdeits/CommonSubexpressions.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-macrotools" ,julia-macrotools)))
|
||
(home-page "https://github.com/rdeits/CommonSubexpressions.jl")
|
||
(synopsis "@code{@@cse} macro for Julia")
|
||
(description "This package provides the @code{@@cse} macro, which performs
|
||
common subexpression elimination.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-compat
|
||
(package
|
||
(name "julia-compat")
|
||
(version "3.25.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaLang/Compat.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1m4r5i8mq29xjp3mllh6047n5a78sdyld57m15anrnsjgaapcgby"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaLang/Compat.jl")
|
||
(synopsis "Compatibility across Julia versions")
|
||
(description "The Compat package is designed to ease interoperability
|
||
between older and newer versions of the Julia language. The Compat package
|
||
provides a macro that lets you use the latest syntax in a backwards-compatible
|
||
way.")
|
||
(license license:expat)))
|
||
|
||
;;; TODO: Remove this autogenerated source package
|
||
;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/>
|
||
(define-public julia-compilersupportlibraries-jll
|
||
(package
|
||
(name "julia-compilersupportlibraries-jll")
|
||
(version "0.4.0+1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl")
|
||
(commit (string-append "CompilerSupportLibraries-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "03j6xdvps259mhdzpjqf41l65w2l9sahvxg4wrp34hcf69wkrzpy"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:tests? #f ; no runtests.jl
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("generate_wrapper_header.*")
|
||
(string-append
|
||
"generate_wrapper_header(\"CompilerSupportLibraries\", \""
|
||
(assoc-ref inputs "gfortran:lib") "\")\n"))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$"))
|
||
#t)))))
|
||
(inputs ;required by artifacts
|
||
`(("gfortran:lib" ,gfortran "lib")))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl")
|
||
(synopsis "Internal wrappers")
|
||
(description "This package provides compiler support for libraries. It is
|
||
an autogenerated source package constructed using @code{BinaryBuilder.jl}. The
|
||
originating @code{build_tarballs.jl} script can be found on the community
|
||
build tree Yggdrasil.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-constructionbase
|
||
(let ((commit "de77e2865b554f9b078fd8c35b593cce0554ae02"))
|
||
(package
|
||
(name "julia-constructionbase")
|
||
(version "1.1.0") ;tag not created upstream
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaObjects/ConstructionBase.jl")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1y79sfj0rds1skl9j16p9161hwa9khm0xc2m4hgjcbh5zzvyr57v"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
|
||
(synopsis "Primitive functions for construction of objects")
|
||
(description "This very lightweight package provides primitive functions
|
||
for construction of objects.")
|
||
(license license:expat))))
|
||
|
||
(define-public julia-datastructures
|
||
(package
|
||
(name "julia-datastructures")
|
||
(version "0.18.9")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaCollections/DataStructures.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
|
||
(propagated-inputs
|
||
`(("julia-compat" ,julia-compat)
|
||
("julia-orderedcollections" ,julia-orderedcollections)))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaCollections/DataStructures.jl")
|
||
(synopsis "Julia module providing different data structures")
|
||
(description "This package implements a variety of data structures,
|
||
including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
|
||
@code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-diffresults
|
||
(package
|
||
(name "julia-diffresults")
|
||
(version "1.0.3")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/DiffResults.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
|
||
(propagated-inputs
|
||
`(("julia-staticarrays" ,julia-staticarrays)))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaDiff/DiffResults.jl")
|
||
(synopsis "In-place differentiation methods of primal values at multi-order")
|
||
(description "This package provides the @code{DiffResult} type, which can
|
||
be passed to in-place differentiation methods instead of an output buffer.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-diffrules
|
||
(package
|
||
(name "julia-diffrules")
|
||
(version "1.0.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/DiffRules.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
|
||
(propagated-inputs
|
||
`(("julia-nanmath" ,julia-nanmath)
|
||
("julia-specialfunctions" ,julia-specialfunctions)))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaDiff/DiffRules.jl")
|
||
(synopsis "Primitive differentiation rules")
|
||
(description "This package provides primitive differentiation rules that
|
||
can be composed via various formulations of the chain rule. Using
|
||
@code{DiffRules}, new differentiation rules can defined, query whether or not
|
||
a given rule exists, and symbolically apply rules to simple Julia expressions.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-difftests
|
||
(package
|
||
(name "julia-difftests")
|
||
(version "0.1.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/DiffTests.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaDiff/DiffTests.jl")
|
||
(synopsis "Common test functions for differentiation tools")
|
||
(description "This package contains a common suite of test functions for
|
||
stressing the robustness of differentiation tools.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-example
|
||
(let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
|
||
(package
|
||
(name "julia-example")
|
||
(version "0.5.4") ;tag not created upstream
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaLang/Example.jl")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaLang/Example.jl")
|
||
(synopsis "Module providing examples")
|
||
(description "This package provides various examples.")
|
||
(license license:expat))))
|
||
|
||
(define-public julia-fillarrays
|
||
(package
|
||
(name "julia-fillarrays")
|
||
(version "0.11.7")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaArrays/FillArrays.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1q1qn9pb5dmppddnmf8gggdqyvivqh3ffvbblhn37smcf9r5sy7d"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required by tests
|
||
`(("julia-staticarrays" ,julia-staticarrays)))
|
||
(home-page "https://github.com/JuliaArrays/FillArrays.jl")
|
||
(synopsis "Lazy matrix representation")
|
||
(description "This package allows to lazily represent matrices filled with
|
||
a single entry, as well as identity matrices. This package exports the
|
||
following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
|
||
@code{Trues} and @code{Falses}.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-finitedifferences
|
||
(package
|
||
(name "julia-finitedifferences")
|
||
(version "0.12.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/FiniteDifferences.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0dcx34026xdpfmbjls3mrknl8ww62kxxfr77kfihbazsfg2gp5b4"))))
|
||
(build-system julia-build-system)
|
||
(inputs
|
||
`(("julia-benchmarktools" ,julia-benchmarktools)))
|
||
(propagated-inputs
|
||
`(("julia-chainrulescore" ,julia-chainrulescore)
|
||
("julia-richardson" ,julia-richardson)
|
||
("julia-staticarrays" ,julia-staticarrays)))
|
||
(home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
|
||
(synopsis "Estimates derivatives with finite differences")
|
||
(description "This package calculates approximate derivatives numerically
|
||
using finite difference.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-fixedpointnumbers
|
||
(package
|
||
(name "julia-fixedpointnumbers")
|
||
(version "0.8.4")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaMath/FixedPointNumbers.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'disable-failing-test
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(substitute* "test/fixed.jl"
|
||
;; A deprecation warning is not thrown
|
||
(("@test_logs.*:warn" all) (string-append "# " all)))
|
||
#t)))))
|
||
(propagated-inputs `(("julia-compat" ,julia-compat)))
|
||
(home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
|
||
(synopsis "Fixed point types for Julia")
|
||
(description "@code{FixedPointNumbers.jl} implements fixed-point number
|
||
types for Julia. A fixed-point number represents a fractional, or
|
||
non-integral, number. In contrast with the more widely known floating-point
|
||
numbers, with fixed-point numbers the decimal point doesn't \"float\":
|
||
fixed-point numbers are effectively integers that are interpreted as being
|
||
scaled by a constant factor. Consequently, they have a fixed number of
|
||
digits (bits) after the decimal (radix) point.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-forwarddiff
|
||
(package
|
||
(name "julia-forwarddiff")
|
||
(version "0.10.17")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/ForwardDiff.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "17xaz4v0zr46p7w873w1fwf31phdnhr0vbdym9yr4flmpzi528jw"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required for tests
|
||
`(("julia-calculus" ,julia-calculus)
|
||
("julia-difftests" ,julia-difftests)))
|
||
(propagated-inputs
|
||
`(("julia-commonsubexpressions" ,julia-commonsubexpressions)
|
||
("julia-diffresults" ,julia-diffresults)
|
||
("julia-diffrules" ,julia-diffrules)
|
||
("julia-nanmath" ,julia-nanmath)
|
||
("julia-specialfunctions" ,julia-specialfunctions)
|
||
("julia-staticarrays" ,julia-staticarrays)))
|
||
(home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
|
||
(synopsis "Methods to take multidimensional derivatives")
|
||
(description "This package implements methods to take derivatives,
|
||
gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
|
||
functions (or any callable object, really) using forward mode automatic
|
||
differentiation (AD).")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-http
|
||
(package
|
||
(name "julia-http")
|
||
(version "0.9.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaWeb/HTTP.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0ij0yci13c46p92m4zywvcs02nn8pm0abyfffiyhxvva6hq48lyl"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'install 'disable-network-tests
|
||
(lambda _
|
||
(substitute* "test/runtests.jl"
|
||
(("\"async.jl") "# \"async.jl")
|
||
(("\"client.jl") "# \"client.jl"))
|
||
(substitute* "test/aws4.jl"
|
||
(("@testset.*HTTP.request with AWS authentication.*" all)
|
||
(string-append all "return\n")))
|
||
(substitute* "test/insert_layers.jl"
|
||
(("@testset.*Inserted final layer runs handler.*" all)
|
||
(string-append all "return\n")))
|
||
(substitute* "test/multipart.jl"
|
||
(("@testset \"Setting of Content-Type.*" all)
|
||
(string-append all "return\n"))
|
||
(("@testset \"Deprecation of .*" all)
|
||
(string-append all "return\n")))
|
||
(substitute* "test/websockets.jl"
|
||
(("@testset.*External Host.*" all)
|
||
(string-append all "return\n")))
|
||
(substitute* "test/messages.jl"
|
||
(("@testset.*Read methods.*" all)
|
||
(string-append all "return\n"))
|
||
(("@testset.*Body - .*" all)
|
||
(string-append all "return\n"))
|
||
(("@testset.*Write to file.*" all)
|
||
(string-append all "return\n")))
|
||
#t)))))
|
||
(propagated-inputs
|
||
`(("julia-inifile" ,julia-inifile)
|
||
("julia-mbedtls" ,julia-mbedtls)
|
||
("julia-uris" ,julia-uris)))
|
||
;; required for tests
|
||
(inputs
|
||
`(("julia-json" ,julia-json)
|
||
("julia-bufferedstreams" ,julia-bufferedstreams)))
|
||
(home-page "https://juliaweb.github.io/HTTP.jl/")
|
||
(synopsis "HTTP support for Julia")
|
||
(description "@code{HTTP.jl} is a Julia library for HTTP Messages,
|
||
implementing both a client and a server.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-inifile
|
||
(package
|
||
(name "julia-inifile")
|
||
(version "0.5.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaIO/IniFile.jl")
|
||
(commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaIO/IniFile.jl")
|
||
(synopsis "Reading Windows-style INI files")
|
||
(description "This is a Julia package that defines an IniFile type that
|
||
allows to interface with @file{.ini} files.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-irtools
|
||
(package
|
||
(name "julia-irtools")
|
||
(version "0.4.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/FluxML/IRTools.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0wwzy77jcdnffnd5fr6xan7162g4wydz67igrq82wflwnrhlcx5y"))))
|
||
(arguments
|
||
'(#:tests? #f)) ;require Documenter, not packaged yet
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-macrotools" ,julia-macrotools)))
|
||
(home-page "https://github.com/FluxML/IRTools.jl")
|
||
(synopsis "Simple and flexible IR format")
|
||
(description "This package provides a simple and flexible IR format,
|
||
expressive enough to work with both lowered and typed Julia code, as well as
|
||
external IRs. It can be used with Julia metaprogramming tools such as
|
||
Cassette.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-jllwrappers
|
||
(package
|
||
(name "julia-jllwrappers")
|
||
(version "1.2.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaPackaging/JLLWrappers.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1sj3mi2dcc13apqfpy401wic5n0pgbck1p98b2g3zw0mln9s83m4"))))
|
||
(arguments
|
||
;; Wants to download stuff
|
||
'(#:tests? #f
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'custom-override-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
;; Make @generate_wrapper_header take an optional argument that
|
||
;; guix packagers can pass to override the default "override"
|
||
;; binary path. This won't be needed when something like
|
||
;; https://github.com/JuliaPackaging/JLLWrappers.jl/pull/27
|
||
;; will be merged.
|
||
(substitute* "src/wrapper_generators.jl"
|
||
(("generate_wrapper_header.*")
|
||
"generate_wrapper_header(src_name, override_path = nothing)\n")
|
||
(("pkg_dir = .*" all)
|
||
(string-append
|
||
all "\n" "override = something(override_path,"
|
||
"joinpath(dirname(pkg_dir), \"override\"))\n"))
|
||
(("@static if isdir.*") "@static if isdir($override)\n")
|
||
(("return joinpath.*") "return $override\n"))
|
||
#t)))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaPackaging/JLLWrappers.jl")
|
||
(synopsis "Julia macros used by JLL packages")
|
||
(description "This package contains Julia macros that enable JLL packages
|
||
to generate themselves. It is not intended to be used by users, but rather is
|
||
used in autogenerated packages via @code{BinaryBuilder.jl}.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-json
|
||
(package
|
||
(name "julia-json")
|
||
(version "0.21.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaIO/JSON.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-datastructures" ,julia-datastructures)
|
||
("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
|
||
("julia-parsers" ,julia-parsers)
|
||
("julia-offsetarrays" ,julia-offsetarrays)))
|
||
(home-page "https://github.com/JuliaIO/JSON.jl")
|
||
(synopsis "JSON parsing and printing library for Julia")
|
||
(description "@code{JSON.jl} is a pure Julia module which supports parsing
|
||
and printing JSON documents.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-macrotools
|
||
(package
|
||
(name "julia-macrotools")
|
||
(version "0.5.6")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/FluxML/MacroTools.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://fluxml.ai/MacroTools.jl")
|
||
(synopsis "Tools for working with Julia code and expressions")
|
||
(description "This library provides tools for working with Julia code and
|
||
expressions. This includes a template-matching system and code-walking tools
|
||
that let you do deep transformations of code.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-mbedtls
|
||
(package
|
||
(name "julia-mbedtls")
|
||
(version "1.0.3")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaLang/MbedTLS.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'install 'disable-network-tests
|
||
;; Tries to connect to httpbin.org
|
||
(lambda _
|
||
(substitute* "test/runtests.jl"
|
||
(("testhost =") "return #"))
|
||
#t)))))
|
||
(propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
|
||
(home-page "https://github.com/JuliaLang/MbedTLS.jl")
|
||
(synopsis "Apache's mbed TLS library wrapper")
|
||
(description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
|
||
TLS} and cryptography C library for Julia.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-mbedtls-jll
|
||
(package
|
||
(name "julia-mbedtls-jll")
|
||
;; version 2.25.0+0 is not compatible with current mbedtls 2.23.0,
|
||
;; upgrade this when mbedtls is updated in guix
|
||
(version "2.24.0+1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl")
|
||
(commit (string-append "MbedTLS-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0kk9dlxdh7yms21npgrdfmjbj8q8ng6kdhrzw3jr2d7rp696kp99"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; No runtests.jl
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("generate_wrapper_header.*")
|
||
(string-append
|
||
"generate_wrapper_header(\"MbedTLS\", \""
|
||
(assoc-ref inputs "mbedtls-apache") "\")\n"))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$"))
|
||
#t)))))
|
||
(inputs `(("mbedtls-apache" ,mbedtls-apache)))
|
||
(propagated-inputs `(("julia-jllwrappers" ,julia-jllwrappers)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl")
|
||
(synopsis "Apache's mbed TLS binary wrappers")
|
||
(description "This Julia module provides @code{mbed TLS} libraries and
|
||
wrappers.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-nanmath
|
||
(package
|
||
(name "julia-nanmath")
|
||
(version "0.3.5")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/mlubin/NaNMath.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/mlubin/NaNMath.jl")
|
||
(synopsis "Implementations of basic math functions")
|
||
(description "Implementations of basic math functions which return
|
||
@code{NaN} instead of throwing a @code{DomainError}.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-orderedcollections
|
||
(package
|
||
(name "julia-orderedcollections")
|
||
(version "1.3.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaCollections/OrderedCollections.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0sfip1ixghsz91q2s7d62rgzw3gppg42fg6bccxlplqa3hfmbycf"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
|
||
(synopsis "Associative containers that preserve insertion order")
|
||
(description "This package implements @code{OrderedDicts} and
|
||
@code{OrderedSets}, which are similar to containers in base Julia. However,
|
||
during iteration the @code{Ordered*} containers return items in the order in
|
||
which they were added to the collection.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-offsetarrays
|
||
(package
|
||
(name "julia-offsetarrays")
|
||
(version "1.5.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaArrays/OffsetArrays.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1y3fnssw2hzyghrk6jfcxslab0f8sjkjszh482snfq4k6mkrhy77"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-adapt" ,julia-adapt)))
|
||
;; CatIndices depends on OffsetArrays, introducing a recursive dependency
|
||
(arguments '(#:tests? #f))
|
||
(home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
|
||
(synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
|
||
(description "@code{OffsetArrays.jl} provides Julia users with arrays that
|
||
have arbitrary indices, similar to those found in some other programming
|
||
languages like Fortran.")
|
||
(license license:expat)))
|
||
|
||
;;; TODO: Remove this autogenerated source package
|
||
;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/>
|
||
(define-public julia-openspecfun-jll
|
||
(let ((commit "6c505cce3bdcd9cd2b15b4f9362ec3a42c4da71c"))
|
||
(package
|
||
(name "julia-openspecfun-jll")
|
||
(version "0.5.3+4") ;tag not created upstream
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0bl2gcgndsbiwhwy8fl070cjm1fyf9kxj6gkikgirmzgjl29iakn"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:tests? #f ; no runtests.jl
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("generate_wrapper_header.*")
|
||
(string-append
|
||
"generate_wrapper_header(\"OpenSpecFun\", \""
|
||
(assoc-ref inputs "openspecfun") "\")\n"))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$"))
|
||
#t)))))
|
||
(inputs
|
||
`(("openspecfun" ,openspecfun)))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)
|
||
("julia-compilersupportlibraries-jll" ,julia-compilersupportlibraries-jll)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl")
|
||
(synopsis "Internal wrappers")
|
||
(description "This package provides a wrapper for OpenSpecFun. It is an
|
||
autogenerated source package constructed using @code{BinaryBuilder.jl}. The
|
||
originating @code{build_tarballs.jl} script can be found on the community
|
||
build tree Yggdrasil.")
|
||
(license license:expat))))
|
||
|
||
(define-public julia-parsers
|
||
(package
|
||
(name "julia-parsers")
|
||
(version "1.0.15")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaData/Parsers.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "16iffl6l28kspgqch48mhi1s8qhspr3cpqcwsph3rqi72lbfqygx"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaData/Parsers.jl")
|
||
(synopsis "Fast parsing machinery for basic types in Julia")
|
||
(description "@code{Parsers.jl} is a collection of type parsers and
|
||
utilities for Julia.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-reexport
|
||
(package
|
||
(name "julia-reexport")
|
||
(version "1.0.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/simonster/Reexport.jl")
|
||
(commit version)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1yhhja1zz6dy5f4fd19bdwd6jwgj7q4w3avzgyg1hjhmdl8jrh0s"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/simonster/Reexport.jl")
|
||
(synopsis "Re-export modules and symbols")
|
||
(description "This package provides tools to re-export modules and symbols.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-requires
|
||
(package
|
||
(name "julia-requires")
|
||
(version "1.1.3")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaPackaging/Requires.jl/")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required for test
|
||
`(("julia-example" ,julia-example)))
|
||
(propagated-inputs
|
||
`(("julia-colors" ,julia-colors)))
|
||
(home-page "https://github.com/JuliaPackaging/Requires.jl/")
|
||
(synopsis "Faster package loader")
|
||
(description "This package make loading packages faster, maybe. It
|
||
supports specifying glue code in packages which will load automatically when
|
||
another package is loaded, so that explicit dependencies (and long load times)
|
||
can be avoided.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-richardson
|
||
(package
|
||
(name "julia-richardson")
|
||
(version "1.4.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaMath/Richardson.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://juliapackages.com/p/richardson")
|
||
(synopsis "Extrapolate function using Richardson method")
|
||
(description "This package provides a function extrapolate that
|
||
extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
|
||
only at a geometric sequence of points @code{> x0} (or optionally @code{<
|
||
x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
|
||
tableau, which adaptively increases the degree of an extrapolation polynomial
|
||
until convergence is achieved to a desired tolerance (or convergence stalls
|
||
due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
|
||
high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
|
||
other power series in @code{h}.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-specialfunctions
|
||
(package
|
||
(name "julia-specialfunctions")
|
||
(version "1.3.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaMath/SpecialFunctions.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1rfhrrkzi3ils7fklbn35ki1yp5x88fi71qknfwqyw4pk8cf8p80"))))
|
||
(build-system julia-build-system)
|
||
(inputs
|
||
`(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
|
||
(propagated-inputs
|
||
`(("julia-chainrulescore" ,julia-chainrulescore)
|
||
("julia-openspecfun-jll" ,julia-openspecfun-jll)))
|
||
(home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
|
||
(synopsis "Special mathematical functions")
|
||
(description "This package provides special mathematical functions,
|
||
including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
|
||
cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
|
||
polygamma functions.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-staticarrays
|
||
(package
|
||
(name "julia-staticarrays")
|
||
(version "1.0.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaArrays/StaticArrays.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "01z8bcqwpfkp8p1h1r36pr5cc3798y76zkas7g3206pcsdhvlkz1"))))
|
||
(build-system julia-build-system)
|
||
(inputs
|
||
`(("julia-benchmarktools" ,julia-benchmarktools)))
|
||
(home-page "https://github.com/JuliaArrays/StaticArrays.jl")
|
||
(synopsis "Statically sized arrays")
|
||
(description "This package provides a framework for implementing
|
||
statically sized arrays in Julia, using the abstract type
|
||
@code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
|
||
@code{StaticArray} will provide fast implementations of common array and
|
||
linear algebra operations.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-uris
|
||
(package
|
||
(name "julia-uris")
|
||
(version "1.2.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaWeb/URIs.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0fqyagsqks5za7m0czafr34m2xh5501f689k9cn5x3npajdnh2r3"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:julia-package-name "URIs" ;required to run tests
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'check 'change-dir
|
||
;; Tests must be run from the testdir
|
||
(lambda* (#:key source outputs #:allow-other-keys)
|
||
(let ((out (assoc-ref outputs "out")))
|
||
(chdir
|
||
(string-append out "/share/julia/packages/URIs/test")))
|
||
#t)))))
|
||
;; required for tests
|
||
(inputs `(("julia-json" ,julia-json)))
|
||
(home-page "https://github.com/JuliaWeb/URIs.jl")
|
||
(synopsis "URI parsing in Julia")
|
||
(description "@code{URIs.jl} is a Julia package that allows parsing and
|
||
working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
|
||
3986.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-unitful
|
||
(package
|
||
(name "julia-unitful")
|
||
(version "1.6.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/PainterQubits/Unitful.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0g5bhlvay9yk11c5dqwbzmb3q7lzj0cq5zchyk39d59fkvvmxvq3"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-constructionbase" ,julia-constructionbase)))
|
||
(home-page "https://painterqubits.github.io/Unitful.jl/stable/")
|
||
(synopsis "Physical units in Julia")
|
||
(description "This package supports SI units and also many other unit
|
||
system.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-zygoterules
|
||
(package
|
||
(name "julia-zygoterules")
|
||
(version "0.2.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/FluxML/ZygoteRules.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-macrotools" ,julia-macrotools)))
|
||
(home-page "https://github.com/FluxML/ZygoteRules.jl")
|
||
(synopsis "Add minimal custom gradients to Zygote")
|
||
(description "Minimal package which enables to add custom gradients to
|
||
Zygote, without depending on Zygote itself.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-zygote
|
||
(package
|
||
(name "julia-zygote")
|
||
(version "0.6.4")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/FluxML/Zygote.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1h2ph0lsisbkh8y4xgwzgw9p5zi243q8zzp5gfh3zw9pzkx6a1rf"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:tests? #f)) ;require CUDA, not packaged yet
|
||
(propagated-inputs
|
||
`(("julia-abstractffs" ,julia-abstractffts)
|
||
("julia-chainrules" ,julia-chainrules)
|
||
("julia-diffrules" ,julia-diffrules)
|
||
("julia-fillarrays" ,julia-fillarrays)
|
||
("julia-forwarddiff" ,julia-forwarddiff)
|
||
("julia-irtools" ,julia-irtools)
|
||
("julia-macrotools" ,julia-macrotools)
|
||
("julia-nanmath" ,julia-nanmath)
|
||
("julia-requires" ,julia-requires)
|
||
("julia-specialfunctions" ,julia-specialfunctions)
|
||
("julia-zygote-rules" ,julia-zygoterules)))
|
||
(home-page "https://fluxml.ai/Zygote.jl")
|
||
(synopsis "Automatic differentiation in Julia")
|
||
(description "Zygote provides source-to-source automatic
|
||
differentiation (AD) in Julia, and is the next-generation AD system for the
|
||
Flux differentiable programming framework.")
|
||
(license license:expat)))
|