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Ben Woodcroft b81cb1f2f3 gnu: bedtools: Add patch to fix compilation on 32 bit systems. 
* gnu/packages/patches/bedtools-32bit-compilation.patch: New file.
* gnu/packages/bioinformatics.scm (bedtools)[source]: Add patch.
* gnu-system.am (dist_patch_DATA): Register patch.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2015-07-25 19:16:49 +02:00
..
bootstrap
patches gnu: bedtools: Add patch to fix compilation on 32 bit systems. 2015-07-25 19:16:49 +02:00
aarddict.scm
abiword.scm
acct.scm
acl.scm
admin.scm Merge branch 'master' into core-updates 2015-07-19 18:12:34 -04:00
adns.scm
aidc.scm
algebra.scm gnu: Add cm. 2015-07-24 18:53:03 +02:00
apl.scm
apr.scm
asciidoc.scm
aspell.scm
attr.scm
audacity.scm
audio.scm gnu: libsbsms: Fix build on non-Intel platforms. 2015-07-21 18:25:41 -04:00
autogen.scm
autotools.scm
avahi.scm
avr.scm
backup.scm Fix typos in translatable strings. 2015-07-23 09:42:23 +02:00
base.scm Merge branch 'master' into core-updates 2015-07-19 18:12:34 -04:00
bash.scm gnu: bash: Update to 4.3.39. 2015-07-11 01:04:18 -04:00
bdw-gc.scm
bioinformatics.scm gnu: bedtools: Add patch to fix compilation on 32 bit systems. 2015-07-25 19:16:49 +02:00
bison.scm
bittorrent.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
boost.scm gnu: boost: Patch to avoid -m32 flag on mips. 2015-07-13 14:53:38 -04:00
bootstrap.scm gnu: bootstrap: Create a wrapper for guile to set the system load path. 2015-07-10 23:47:07 -04:00
busybox.scm
calcurse.scm
calendar.scm
ccache.scm gnu: ccache: Update to 3.2.2. 2015-07-14 18:14:43 -05:00
cdrom.scm
certs.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
check.scm
ci.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
cmake.scm
code.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
commencement.scm gnu: gcc-5.1, gcc-toolchain-5.1, libstdc++-doc-5.1: Rename to *-5. 2015-07-19 23:20:39 -04:00
compression.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
conkeror.scm
cook.scm
cpio.scm gnu: cpio: Fix symlink-bad-length test. 2015-06-17 23:19:02 -04:00
cppi.scm
cross-base.scm gnu: cross-base: Distinguish cross Linux headers from native headers. 2015-07-19 00:15:44 +02:00
crypto.scm
cryptsetup.scm
cups.scm gnu: cups-filters: Update to 1.0.71. 2015-07-07 16:47:48 -04:00
curl.scm gnu packages: Avoid description lines with leading "(". 2015-07-18 13:05:01 +03:00
cursynth.scm
cyrus-sasl.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
databases.scm Fix typos in translatable strings. 2015-07-23 09:42:23 +02:00
datamash.scm gnu: datamash: Update to 1.0.7. 2015-07-21 01:04:58 +02:00
dc.scm gnu: Rename module gnutls to tls. 2015-07-05 17:09:42 +02:00
debug.scm
dejagnu.scm
dictionaries.scm
disk.scm
djvu.scm
dns.scm gnu: bind-utils: Update to 9.10.2-P2. 2015-07-20 23:11:07 -04:00
docbook.scm
doxygen.scm
dunst.scm gnu: Add dunst. 2015-07-14 18:46:18 +03:00
ebook.scm Revert "gnu: calibre: Update to 2.30.0." 2015-07-18 10:21:15 +02:00
ed.scm gnu: ed: Update to 1.12. 2015-07-10 23:47:08 -04:00
elf.scm
emacs.scm gnu: git-modes: Add file-name field to source origin. 2015-07-22 11:50:07 -04:00
enchant.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
engineering.scm
enlightenment.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
fcitx.scm
feh.scm
file.scm
firmware.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
fish.scm
flashing-tools.scm gnu: dfu-programmer: Update to 0.7.2. 2015-07-18 06:47:33 -04:00
flex.scm
fltk.scm
fonts.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
fontutils.scm gnu: teckit: Update to 2.5.4. 2015-07-22 19:29:17 +02:00
freedesktop.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
freeipmi.scm gnu: freeipmi: Update to 1.4.9. 2015-07-06 00:47:09 +02:00
fribidi.scm
ftp.scm gnu: Rename module gnutls to tls. 2015-07-05 17:09:42 +02:00
fvwm.scm
game-development.scm
games.scm gnu: retroarch: Update to 1.2.2. 2015-07-23 22:32:00 +08:00
gawk.scm
gcal.scm gnu: gcal: Update to 4. 2015-07-06 00:47:09 +02:00
gcc.scm gnu: gcc-5: Update to 5.2.0. 2015-07-19 23:20:39 -04:00
gd.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
gdb.scm
gdbm.scm
geeqie.scm
gettext.scm gnu: gettext: Update to 0.19.5. 2015-07-10 23:47:07 -04:00
ghostscript.scm gnu: ghostscript: Add "doc" output. 2015-07-03 15:28:06 +02:00
gimp.scm
gkrellm.scm
gl.scm gnu: guile-opengl: Install compiled modules in the correct place. 2015-07-18 22:59:46 -04:00
glib.scm gnu: itstool: Add python2-libxml2 to propagated-inputs. 2015-06-19 23:02:36 -04:00
gnome.scm Merge branch 'master' into core-updates 2015-07-19 18:12:34 -04:00
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm gnu: libmicrohttpd: Update to 0.9.42. 2015-07-21 01:03:21 +02:00
gnupg.scm gnu: libgpg-error: Update to 1.19. 2015-07-10 23:47:08 -04:00
gnustep.scm
gnuzilla.scm gnu: icecat: Add patch to adapt to freetype 2.6. 2015-07-17 01:42:35 -04:00
gperf.scm
gprolog.scm
gps.scm
graphics.scm
graphviz.scm
groff.scm
grub.scm
grue-hunter.scm
gsasl.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
gstreamer.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
gtk.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
guile-wm.scm
guile.scm gnu: guile-minikanren: Fix README location. 2015-07-22 22:56:41 +02:00
gv.scm
gxmessage.scm gnu: gxmessage: Update to 3.4.3. 2015-07-06 00:47:09 +02:00
haskell.scm Merge branch 'master' into core-updates 2015-07-19 18:12:34 -04:00
hugs.scm
hurd.scm
ibus.scm
icu4c.scm
idutils.scm
image.scm gnu packages: Avoid description lines with leading "(". 2015-07-18 13:05:01 +03:00
imagemagick.scm gnu: imagemagick: Do not retain reference to "doc" output. 2015-06-22 23:17:16 +02:00
indent.scm
inkscape.scm
irssi.scm
iso-codes.scm
java.scm
jemalloc.scm gnu: jemalloc: Build with gcc-4.8 on i686. 2015-06-21 14:14:04 -04:00
jrnl.scm
julia.scm gnu: julia: Update to 0.3.10. 2015-07-21 10:33:59 +02:00
kde-frameworks.scm gnu: Add kwindowsystem. 2015-07-24 23:01:14 +02:00
kde.scm
key-mon.scm
language.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
ld-wrapper.in
less.scm
lesstif.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm gnu: libidn: Update to 1.31. 2015-07-10 23:47:08 -04:00
libphidget.scm
libreoffice.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
libsigsegv.scm
libunistring.scm gnu: libunistring: Update to 0.9.6. 2015-07-10 23:47:08 -04:00
libunwind.scm
libupnp.scm
libusb.scm
lightning.scm
links.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
linux-libre-i686.conf gnu: linux-libre: Update to 4.1. 2015-06-23 02:53:00 -04:00
linux-libre-x86_64.conf gnu: linux-libre: Update to 4.1. 2015-06-23 02:53:00 -04:00
linux.scm gnu: e2fsprogs: Update to 1.42.13. 2015-07-24 17:12:53 -04:00
lirc.scm
lisp.scm gnu: clisp: Do not pass --build=<triplet> to configure. 2015-07-17 18:34:05 -04:00
llvm.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
lout.scm
lsh.scm
lsof.scm
lua.scm
lxde.scm gnu: Add lxrandr. 2015-07-22 00:15:16 +02:00
lxqt.scm gnu: Add liblxqt. 2015-07-24 23:10:54 +02:00
lynx.scm gnu: Rename module gnutls to tls. 2015-07-05 17:09:42 +02:00
m4.scm
machine-learning.scm gnu: Replace versioned gfortran inputs with just "gfortran". 2015-06-25 18:28:54 +02:00
mail.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
make-bootstrap.scm gnu: Build tarballs deterministically. 2015-07-14 19:44:38 -04:00
man.scm gnu: man-db: Update to 2.7.1. 2015-07-21 20:42:06 +03:00
markdown.scm gnu: hoedown: Replace 'fix-makefile' phase with make-flags. 2015-07-21 15:08:33 -04:00
maths.scm gnu: pspp: Update to 0.8.5. 2015-07-21 01:12:34 +02:00
mc.scm
mcrypt.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
messaging.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
mg.scm
miscfiles.scm
mit-krb5.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
moe.scm
moreutils.scm
mp3.scm gnu: ripperX: Update to 2.8.0. 2015-07-24 21:16:29 +02:00
mpd.scm gnu: ncmpc: Update to 0.24. 2015-07-09 18:42:00 +02:00
mpi.scm gnu: openmpi: Upgrade to 1.8.5. 2015-06-29 15:34:36 -05:00
mtools.scm
multiprecision.scm gnu: gmp: Remove --build from configure-flags. 2015-07-13 18:59:32 -04:00
music.scm gnu: setbfree: Disable unsupported optimizations on non-x86. 2015-07-15 17:19:58 +02:00
nano.scm gnu: nano: Update to 2.4.2. 2015-07-21 01:00:23 +02:00
ncdu.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
ncurses.scm
netpbm.scm
nettle.scm gnu: nettle: Disable ifunc method of library initialization. 2015-06-25 16:47:59 -04:00
networking.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
ninja.scm gnu: ninja: Do not report files with mtime = 0 as missing. 2015-07-18 23:27:18 +02:00
node.scm
noweb.scm
ntp.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
nutrition.scm
nvi.scm
ocaml.scm gnu: Add Camlp4. 2015-07-21 21:14:33 +02:00
ocr.scm
onc-rpc.scm
openbox.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
openldap.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
orpheus.scm
ots.scm
package-management.scm gnu: guix: Update development snapshot. 2015-07-22 00:33:47 +02:00
parallel.scm gnu: parallel: Update to 20150722. 2015-07-23 20:23:56 +02:00
patchutils.scm
pciutils.scm
pcre.scm gnu: pcre: Enable more features. 2015-07-11 13:00:13 -04:00
pdf.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
pem.scm
perl.scm Fix typos in translatable strings. 2015-07-23 09:42:23 +02:00
photo.scm
pkg-config.scm
plotutils.scm
polkit.scm gnu: polkit: Update to 0.113. 2015-07-11 19:03:19 -04:00
popt.scm
pretty-print.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
protobuf.scm
pth.scm
pulseaudio.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
pumpio.scm gnu: pumpa: Update to 0.9.1. 2015-07-12 11:09:05 +02:00
pv.scm gnu: Add pv. 2015-06-27 17:27:49 +03:00
python.scm gnu: python-pillow: Disable egg compression. 2015-07-20 23:15:24 +02:00
qemu.scm gnu: qemu: Add fixes for CVE-2015-{4037,4103,4104,4105,4106}. 2015-06-16 00:29:28 -04:00
qt.scm gnu: qt: On armhf, enable use of NEON. 2015-07-15 13:37:01 -04:00
ratpoison.scm gnu: ratpoison: Add multiple monitors support. 2015-07-22 13:38:40 +02:00
rc.scm gnu: Add rc. 2015-07-13 19:33:17 -04:00
rdesktop.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
rdf.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
readline.scm
rrdtool.scm
rsync.scm
ruby.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
rush.scm
samba.scm gnu: talloc: Change source URI to use https. 2015-06-16 14:20:56 -04:00
sawfish.scm
scanner.scm
scheme.scm
screen.scm gnu: screen: Update to 4.3.1. 2015-06-29 14:42:10 +02:00
sdl.scm gnu: guile-sdl: Update to 0.5.2. 2015-07-06 00:47:09 +02:00
search.scm
serveez.scm
shishi.scm gnu: Rename module gnutls to tls. 2015-07-05 17:09:42 +02:00
skarnet.scm gnu: Add execline. 2015-07-12 22:02:41 +02:00
skribilo.scm
slang.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
slim.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
smalltalk.scm
ssh.scm Merge branch 'master' into core-updates 2015-07-15 15:10:32 -04:00
stalonetray.scm
statistics.scm gnu: r: Replace "atlas" with "openblas". 2015-07-03 18:45:14 +02:00
suckless.scm gnu: Rename (gnu packages dwm) to (gnu packages suckless). 2015-06-15 17:25:41 -04:00
swig.scm gnu: swig: Update to 3.0.5. 2015-06-18 09:46:55 -04:00
sxiv.scm
synergy.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
task-management.scm gnu: Rename module gnutls to tls. 2015-07-05 17:09:42 +02:00
tbb.scm
tcl.scm
tcsh.scm
telephony.scm gnu: ucommon: Update to 6.3.6. 2015-07-23 20:22:09 +02:00
texinfo.scm gnu: texinfo: Add procps to native-inputs to fix tests. 2015-07-11 00:59:31 -04:00
texlive.scm
textutils.scm
time.scm
tls.scm Merge branch 'master' into core-updates 2015-07-19 18:12:34 -04:00
tmux.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
tor.scm gnu: tor: Update to 0.2.6.10. 2015-07-22 22:10:39 -04:00
tre.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
tv.scm
unrtf.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
upnp.scm
uucp.scm
valgrind.scm
version-control.scm gnu: mercurial: Change source URI scheme to https. 2015-07-21 02:05:20 -04:00
video.scm gnu: vlc: Update input Qt to version 5. 2015-07-25 18:29:00 +02:00
vim.scm
vpn.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
vtk.scm
w3m.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
wdiff.scm
web.scm Fix typos in translatable strings. 2015-07-23 09:42:23 +02:00
webkit.scm gnu: Rename module gnutls to tls. 2015-07-05 17:09:42 +02:00
weechat.scm gnu: Move content of openssl module into tls module. 2015-07-05 18:27:24 +02:00
wget.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
wicd.scm
wine.scm gnu: Rename module gnutls to tls. 2015-07-05 17:09:42 +02:00
wordnet.scm gnu packages: Avoid description lines with leading "(". 2015-07-18 13:05:01 +03:00
wv.scm
wxwidgets.scm
xdisorg.scm Merge branch 'master' into core-updates 2015-07-19 18:12:34 -04:00
xfce.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
xfig.scm
xiph.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
xml.scm gnu packages: Avoid description lines with leading "(". 2015-07-18 13:05:01 +03:00
xnee.scm
xorg.scm gnu: Document xorg packages. 2015-07-18 12:54:39 +03:00
yasm.scm
yubico.scm
zile.scm
zip.scm gnu: unzip: Fix CVE-2014-9636 and some other bugs. 2015-07-15 23:02:27 -04:00
zsh.scm