guix/gnu/packages
Ricardo Wurmus 99e4b11d81
gnu: r-shortread: Update to 1.36.1.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
2018-03-01 21:28:53 +01:00
..
aux-files gnu: linux-libre: Update to 4.15, while retaining 4.14 LTS. 2018-01-30 03:51:21 -05:00
bootstrap
patches
abduco.scm
abiword.scm
accessibility.scm Update email address for ng0. 2017-11-19 12:13:43 +02:00
acct.scm
acl.scm Merge branch 'master' into core-updates 2018-02-16 13:14:26 -05:00
admin.scm gnu: thermald: Update to 1.7.1. 2018-02-27 16:49:57 +01:00
adns.scm
agda.scm
aidc.scm
algebra.scm
android.scm gnu: Add mkbootimg. 2018-01-20 23:07:20 +01:00
animation.scm
anthy.scm
apl.scm
apr.scm gnu: apr-util: Update to 1.6.1 [fixes CVE-2017-12618]. 2017-10-30 21:46:18 -04:00
aspell.scm
assembly.scm
astronomy.scm gnu: cfitsio: Use HTTPS home page. 2018-02-02 17:44:42 +01:00
attr.scm
audio.scm
augeas.scm gnu: augeas: Update to 1.10.1. 2018-02-15 17:17:19 +01:00
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm
base.scm
bash.scm
bdw-gc.scm
benchmark.scm gnu: fio: Update to 3.5. 2018-02-22 14:15:17 +01:00
bioinformatics.scm gnu: r-shortread: Update to 1.36.1. 2018-03-01 21:28:53 +01:00
bison.scm gnu: Use HTTPS for almost all gnu.org HOME-PAGEs. 2017-03-30 01:30:16 +02:00
bittorrent.scm
boost.scm
bootloaders.scm
bootstrap.scm gnu: Add basic support for s390x-linux-gnu targets. 2018-02-19 22:22:21 +01:00
build-tools.scm gnu: meson: Update to 0.44.0. 2017-12-12 20:30:19 +01:00
busybox.scm gnu: busybox: Fix indentation. 2017-06-21 10:13:39 +03:00
c.scm
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm
certs.scm
check.scm gnu: python-fixtures: Update to 3.0.0. 2018-02-28 13:58:43 +01:00
chemistry.scm
chez.scm
ci.scm
cinnamon.scm gnu: Add cinnamon-desktop. 2017-10-15 20:29:31 +01:00
cmake.scm gnu: cmake: Run tests in parallel. 2017-02-21 14:50:51 +01:00
cobol.scm gnu: cobol: Run cobol85 test-suite. 2018-01-25 20:29:21 +02:00
code.scm gnu: global: Update to 6.6.2. 2018-02-11 01:35:47 +01:00
commencement.scm
compression.scm Merge branch 'master' into core-updates 2018-02-16 13:14:26 -05:00
compton.scm
conkeror.scm
conky.scm
connman.scm
cook.scm
cpio.scm
cpp.scm gnu: Add Dashel. 2018-01-30 16:40:28 +01:00
cppi.scm
cran.scm
cross-base.scm
crypto.scm
cryptsetup.scm
cups.scm Merge branch 'master' into core-updates 2018-01-19 23:59:20 -05:00
curl.scm
cyrus-sasl.scm gnu: cyrus-sasl: Use new home page. 2017-11-11 05:17:58 +01:00
databases.scm gnu: python-pickleshare: Run the tests. 2018-02-26 04:50:30 +01:00
datamash.scm
datastructures.scm gnu: liburcu: Update to 0.10.1. 2018-01-24 15:47:52 +01:00
dav.scm
dc.scm
debug.scm
dejagnu.scm
dico.scm
dictionaries.scm gnu: gcide: Update to 0.52. 2018-01-29 20:46:59 +02:00
digest.scm
direct-connect.scm
disk.scm
display-managers.scm gnu: lightdm: Update to 1.24.0. 2018-01-16 14:25:02 -08:00
django.scm
djvu.scm gnu: djvulibre: Remove timestamps from .svgz files. 2017-09-01 11:05:32 +02:00
dns.scm
docbook.scm
docker.scm
documentation.scm
dunst.scm
dvtm.scm
ebook.scm
ed.scm gnu: ed: Update to 1.14.2. 2017-04-03 14:51:49 +02:00
education.scm
electronics.scm Update e-mail for Theodoros Foradis. 2017-10-03 17:07:54 +02:00
elf.scm
elixir.scm
emacs.scm gnu: Remove duplicate definition of emacs-esxml. 2018-02-28 23:05:06 +01:00
embedded.scm
emulators.scm
enchant.scm
engineering.scm
enlightenment.scm gnu: efl: Use separate "include" output. 2018-03-01 22:19:37 +02:00
entr.scm
erlang.scm
fabric-management.scm gnu: Add ibutils. 2017-09-23 18:35:24 +02:00
fcitx.scm gnu: Add fcitx-configtool. 2017-01-20 19:35:47 +01:00
figlet.scm
file-systems.scm
file.scm Merge branch 'master' into core-updates 2018-01-04 21:21:04 -05:00
finance.scm
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm gnu: fltk: Fix freetype support. 2018-01-20 20:29:35 -05:00
fonts.scm
fontutils.scm
forth.scm gnu: Rename (gnu packages gforth) to (gnu packages forth). 2017-07-18 09:58:56 +02:00
fpga.scm
freedesktop.scm
freeipmi.scm gnu: freeipmi: Update to 1.6.1. 2018-02-13 23:52:39 +01:00
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm
games.scm gnu: golly: Fix source url. 2018-03-01 11:19:56 -06:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
geo.scm gnu: Add spatialite-gui. 2018-02-22 14:35:51 +01:00
gettext.scm
ghostscript.scm gnu: Use HTTPS for supported freedesktop.org home pages. 2018-02-26 20:13:10 +01:00
gimp.scm
gkrellm.scm
gl.scm
glib.scm
gnome.scm
gnu-doc.scm
gnu-pw-mgr.scm gnu: Use HTTPS for almost all gnu.org HOME-PAGEs. 2017-03-30 01:30:16 +02:00
gnucash.scm
gnunet.scm
gnupg.scm
gnustep.scm
gnuzilla.scm
gobby.scm
golang.scm
gperf.scm
gprolog.scm
gps.scm
graph.scm gnu: Add r-diffusionmap. 2017-12-18 12:01:35 +01:00
graphics.scm
graphviz.scm
groff.scm gnu: groff-minimal: Inherit phases from groff. 2017-12-06 17:25:23 +01:00
gsasl.scm
gstreamer.scm
gtk.scm
guile-wm.scm gnu: guile-wm: Fix up indentation. 2017-12-07 11:23:27 -05:00
guile.scm
gv.scm
gxmessage.scm
ham-radio.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm gnu: Add ghc-uri-encode. 2018-02-26 01:36:16 +01:00
haskell.scm gnu: ghc-uuid: Fix build. 2018-03-01 21:11:43 +01:00
hexedit.scm
hugs.scm
hurd.scm gnu: Use 'modify-phases' syntax. 2017-09-20 20:58:04 -04:00
ibus.scm
icu4c.scm gnu: icu4c: Update to 60.2. 2017-12-19 23:34:10 +01:00
idris.scm
idutils.scm
image-processing.scm Merge branch 'master' into core-updates 2018-01-23 17:01:07 -05:00
image-viewers.scm
image.scm gnu: Add libiptcdata. 2018-02-26 17:05:46 -05:00
imagemagick.scm gnu: imagemagick: Update to 6.9.9-36. 2018-03-01 17:40:49 +01:00
indent.scm
inklingreader.scm
inkscape.scm
irc.scm gnu: irssi: Update to 1.1.1 [fixes CVE-2018-{7050,7051,7052,7053,7054}]. 2018-02-15 14:41:26 -05:00
iso-codes.scm
java.scm
javascript.scm
jemalloc.scm
jrnl.scm
julia.scm
kde-frameworks.scm gnu: phonon: Update to 4.10.0. 2018-02-27 16:49:58 +01:00
kde.scm
kerberos.scm
key-mon.scm
kodi.scm
language.scm gnu: perl-lingua-pt-stemmer: Update URL. 2018-01-19 16:53:46 -08:00
ld-wrapper.in
ldc.scm
lego.scm
less.scm
lesstif.scm gnu packages: Clean up synopses and descriptions. 2015-07-18 13:05:01 +03:00
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm Merge remote-tracking branch 'origin/master' into core-updates 2017-12-31 14:10:25 +02:00
libffcall.scm
libffi.scm
libftdi.scm gnu: libftdi: Update to 1.4. 2018-02-28 22:58:23 +01:00
libidn.scm gnu: Disable gnulib's test-lock test in packages. 2017-11-06 17:32:42 -06:00
libphidget.scm gnu: libphidget: Add "debug" output. 2013-07-16 22:15:23 +02:00
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm gnu: gmtp: Update to 1.3.11. 2018-02-11 10:20:41 -05:00
license.scm gnu: Add licensecheck. 2018-02-24 20:01:31 +03:00
lighting.scm
linux.scm gnu: linux-libre: Update to 4.15.6. 2018-02-26 21:32:34 -05:00
lirc.scm
lisp.scm
llvm.scm
logging.scm
lolcode.scm
lout.scm gnu: lout: Update phase style. 2018-02-21 15:02:48 +01:00
lsof.scm
lua.scm Merge branch 'master' into core-updates 2018-02-09 01:46:34 -05:00
lxde.scm
lxqt.scm gnu: lxqt-common: Remove. 2017-10-22 16:05:26 -07:00
m4.scm
machine-learning.scm
mail.scm gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461]. 2018-02-28 22:58:23 +01:00
make-bootstrap.scm
man.scm Merge branch 'master' into core-updates 2018-02-03 22:46:07 -05:00
markup.scm gnu: cmark: Mark up description. 2017-12-24 16:12:15 +01:00
marst.scm gnu: Use HTTPS for almost all gnu.org HOME-PAGEs. 2017-03-30 01:30:16 +02:00
mate.scm
maths.scm
mc.scm
mcrypt.scm
medical.scm
mes.scm
messaging.scm
microcom.scm
mingw.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm
mpi.scm gnu: hwloc: Add 2.0.0. 2018-02-06 17:34:34 +01:00
mtools.scm
multiprecision.scm
music.scm gnu: Add patchmatrix. 2018-03-01 21:12:59 +01:00
musl.scm gnu: musl: Use HTTPS home page. 2018-02-23 16:00:04 +01:00
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: strongswan: Separate phases. 2018-02-22 17:24:37 +01:00
nfs.scm gnu: nfs-utils: Adapt to changes in glibc 2.26. 2018-01-10 00:07:40 -08:00
nickle.scm
nim.scm
ninja.scm gnu: ninja: Update to 1.8.2. 2018-01-19 13:19:33 +01:00
node.scm
noweb.scm
ntp.scm gnu: openntpd: Enable use of TLS-based time constraints. 2017-11-27 13:29:18 -05:00
nutrition.scm
nvi.scm
ocaml.scm
ocr.scm
onc-rpc.scm
openbox.scm
openldap.scm
openstack.scm gnu: python-oslo.log: Update to 3.36.0. 2018-02-28 13:59:03 +01:00
orpheus.scm gnu: orpheus: Fix build on aarch64-linux. 2018-01-21 12:53:33 +02:00
ots.scm
package-management.scm gnu: gcab: Update to 1.1. 2018-02-27 16:49:57 +01:00
parallel.scm gnu: parallel: Update to 20180222. 2018-02-23 16:00:03 +01:00
password-utils.scm
patchutils.scm gnu: colordiff: Update to 1.0.18. 2018-01-12 13:08:13 +01:00
pciutils.scm
pcre.scm
pdf.scm
pem.scm
perl-check.scm
perl-web.scm gnu: perl-mojolicious: Update to 7.59. 2017-12-23 23:57:56 +01:00
perl.scm
photo.scm
php.scm gnu: php: Update to 7.2.1. 2018-01-27 11:36:10 +01:00
pkg-config.scm
plotutils.scm
polkit.scm gnu: polkit: Fix 'invoke' call. 2018-02-27 09:22:24 +01:00
popt.scm
pretty-print.scm
profiling.scm gnu: Add scorep-openmpi. 2017-10-03 17:07:55 +02:00
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm gnu: pumpa: Update to 0.9.3. 2018-02-22 17:24:36 +01:00
pv.scm
python-crypto.scm gnu: python-pyopenssl: Update to 17.5.0. 2018-02-20 16:03:07 +01:00
python-web.scm gnu: python-webencodings: Update to 0.5.1. 2018-02-28 16:02:55 +01:00
python.scm
qt.scm
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm gnu: Remove redundant cmake libdir configure flags. 2017-12-19 19:52:01 +02:00
rdf.scm
re2c.scm
readline.scm
regex.scm
robotics.scm gnu: Add Aseba. 2018-01-30 16:40:32 +01:00
rrdtool.scm
rsync.scm gnu: rsync: Update to 3.1.3. 2018-01-30 09:25:35 +01:00
ruby.scm
rush.scm gnu: Use HTTPS for almost all gnu.org HOME-PAGEs. 2017-03-30 01:30:16 +02:00
rust.scm gnu: cargo-version: Fix URI in comment. 2018-01-29 00:23:27 +01:00
samba.scm
sawfish.scm gnu: librep: Update to 0.92.7. 2018-02-06 20:02:12 +01:00
scanner.scm gnu: sane-backends-minimal: Run most tests. 2017-05-24 22:54:39 +02:00
scheme.scm gnu: mit-scheme: Update phase style. 2018-02-22 17:24:36 +01:00
screen.scm
scribus.scm
scsi.scm
sdcc.scm gnu: sdcc: Enable ucsim. 2016-10-30 01:03:09 +02:00
sdl.scm
search.scm
security-token.scm gnu: ccid: Update to 1.4.29. 2018-02-22 14:35:51 +01:00
selinux.scm
serialization.scm
serveez.scm
shells.scm gnu: loksh: Update to 6.2. 2018-02-11 03:06:57 +01:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm gnu: s6-networking: Update to 2.3.0.2. 2018-02-23 16:00:06 +01:00
skribilo.scm gnu: Use HTTPS for supported nongnu.org home pages. 2018-02-16 11:11:40 +01:00
slang.scm
smalltalk.scm gnu: Use 'modify-phases' syntax. 2017-09-20 20:58:04 -04:00
sml.scm
speech.scm
spice.scm
ssh.scm
sssd.scm
stalonetray.scm
statistics.scm gnu: r-forcats: Update to 0.3.0. 2018-02-22 11:18:03 +01:00
storage.scm
suckless.scm gnu: blind: Update to 1.1. 2018-01-10 15:59:47 +01:00
swig.scm gnu: swig: Fix build with Perl 5.26.0. 2017-06-14 10:24:03 -04:00
sync.scm
syncthing.scm
syndication.scm gnu: newsbeuter: Deprecate in favour of newsboat. 2018-01-11 03:16:00 +01:00
synergy.scm
task-management.scm
tbb.scm
tcl.scm
telephony.scm
terminals.scm
tex.scm
texinfo.scm
text-editors.scm
textutils.scm
time.scm
tls.scm
tmux.scm
tor.scm gnu: tor: Update to 3.2.9. 2018-01-09 16:42:49 +01:00
toys.scm
tryton.scm
tv.scm
uml.scm
unrtf.scm gnu: Use HTTPS for almost all gnu.org HOME-PAGEs. 2017-03-30 01:30:16 +02:00
upnp.scm
uucp.scm
valgrind.scm
version-control.scm gnu: git-remote-gcrypt: Update to 1.0.2. 2018-02-28 22:58:23 +01:00
video.scm
vim.scm
virtualization.scm
vpn.scm
vulkan.scm
w3m.scm gnu: w3m: Update to 0.5.3+git20180125 [fixes CVE-2018-{6196,6197,6198}]. 2018-02-11 09:59:41 -05:00
wdiff.scm
web-browsers.scm
web.scm
webkit.scm
wget.scm
wicd.scm
wine.scm
wm.scm
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm
xfce.scm
xfig.scm
xiph.scm
xml.scm
xnee.scm
xorg.scm gnu: xorgproto: Update to 2018.4. 2018-03-01 17:40:48 +01:00
zile.scm