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guix/gnu/packages
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Ricardo Wurmus 8e72f0f319
gnu: deeptools: Update to 3.1.2. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
2018-10-05 09:21:54 +02:00
..
aux-files gnu: linux-libre: Enable SHPC PCI Hotplug driver, now built-in only. 2018-09-25 23:17:20 -04:00
bootstrap
patches quilt: Remove test workarounds. 2018-10-03 10:45:02 -05:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: wpa-supplicant-gui: Remove redundant code. 2018-10-04 04:20:05 +02:00
adns.scm
agda.scm gnu: agda: Fix build. 2018-10-01 12:12:23 +02:00
aidc.scm
algebra.scm
android.scm
animation.scm
anthy.scm
apl.scm
apr.scm
aspell.scm
assembly.scm
astronomy.scm
attr.scm
audio.scm gnu: rubberband: Use HTTPS home page. 2018-10-04 04:20:05 +02:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: obnam: Add deprecation warning. 2018-09-11 21:03:07 +02:00
base.scm
bash.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: r-chippeakanno: Update to 3.14.2. 2018-09-09 22:26:02 +02:00
bioinformatics.scm gnu: deeptools: Update to 3.1.2. 2018-10-05 09:21:54 +02:00
bison.scm
bittorrent.scm gnu: qbittorrent: Update to 4.1.3. 2018-09-20 15:31:17 -04:00
boost.scm
bootloaders.scm gnu: u-boot: Use HTTPS home page. 2018-09-20 04:50:34 +02:00
bootstrap.scm
build-tools.scm
busybox.scm gnu: busybox: Update to 1.29.3. 2018-09-18 14:18:43 +02:00
c.scm
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm gnu: xorriso: Update to 1.5.0. 2018-09-18 13:50:32 +02:00
certs.scm
check.scm gnu: python-nose-timer: Update to 0.7.3. 2018-09-25 11:46:08 +02:00
chemistry.scm
chez.scm
ci.scm gnu: cuirass: Update to fe2b73c. 2018-10-02 13:23:29 +02:00
cinnamon.scm gnu: cinnamon-desktop: Use Guix's built-in bootstrap phase. 2018-09-18 13:49:23 +02:00
cluster.scm
cmake.scm
cobol.scm
code.scm gnu: rtags: Don't use unstable tarball. 2018-10-04 04:20:04 +02:00
commencement.scm
compression.scm
compton.scm
conkeror.scm
conky.scm
connman.scm
cook.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: r-acclma: Fix uses of @acronym in description. 2018-10-04 09:46:43 +02:00
cross-base.scm
crypto.scm gnu: Add asignify. 2018-09-09 20:05:47 -04:00
cryptsetup.scm
cups.scm gnu: escpr: Update to 1.6.30. 2018-10-04 09:51:47 +02:00
curl.scm
cyrus-sasl.scm
databases.scm gnu: python-fakeredis: Edit description. 2018-09-28 00:01:43 +02:00
datamash.scm
datastructures.scm
dav.scm
dc.scm
debian.scm Add 'GNU Guix' comment to all (gnu packages) headers. 2018-09-21 10:25:32 +02:00
debug.scm
dejagnu.scm
dico.scm gnu: dico: Update to 2.7. 2018-09-27 03:51:06 +02:00
dictionaries.scm gnu: grammalecte: Update source hash. 2018-10-02 23:08:30 +02:00
digest.scm
direct-connect.scm
disk.scm gnu: ndctl: Return #t from phases. 2018-10-04 04:20:06 +02:00
display-managers.scm
django.scm
djvu.scm
dlang.scm gnu: Rename ldc.scm to dlang.scm. 2018-09-10 17:47:52 +02:00
dns.scm gnu: Add nsd. 2018-10-04 21:10:34 +02:00
docbook.scm
docker.scm
documentation.scm
dunst.scm
dvtm.scm
ebook.scm
ed.scm
education.scm gnu: snap: Update to 4.2.1.4. 2018-09-21 22:22:09 +02:00
electronics.scm gnu: libsigrokdecode: Update to 0.5.2. 2018-09-15 03:38:31 +02:00
elf.scm gnu: Add libabigail. 2018-09-10 20:27:42 +02:00
elixir.scm
emacs.scm gnu: Add emacs-spaceline. 2018-10-03 18:54:29 +02:00
embedded.scm gnu: Add stlink. 2018-10-04 00:18:05 +02:00
emulators.scm gnu: retroarch: Update to 1.7.5. 2018-10-04 06:28:27 +02:00
enchant.scm gnu: enchant: Update to 2.2.3. 2018-09-26 00:33:01 +02:00
engineering.scm
enlightenment.scm gnu: ephoto: Fix typos in description. 2018-10-04 06:28:27 +02:00
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm gnu: enchant: Update to 2.2.3. 2018-09-26 00:33:01 +02:00
figlet.scm
file-systems.scm gnu: disorderfs: Update to 0.5.4. 2018-10-04 04:20:06 +02:00
file.scm
finance.scm
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: font-culmus: Update to 0.133. 2018-09-30 15:46:46 +03:00
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm gnu: packagekit: Update to 1.1.11. 2018-10-04 04:20:05 +02:00
freeipmi.scm
fribidi.scm
ftp.scm gnu: filezilla: Update to 3.37.1. 2018-09-21 19:52:27 +02:00
fvwm.scm
game-development.scm gnu: tiled: Update to 1.2.0. 2018-10-03 14:28:11 -04:00
games.scm gnu: Add freedroidrpg. 2018-10-04 04:20:05 +02:00
gawk.scm
gcal.scm
gcc.scm
gd.scm gnu: libgd: Fix CVE-2018-{5711,1000222}. 2018-09-09 18:13:19 -04:00
gdb.scm
geo.scm gnu: geos: Update to 3.7.0. 2018-10-04 20:01:06 +05:30
gettext.scm
ghostscript.scm gnu: ghostscript: Update replacement to 9.24 [security fixes]. 2018-09-09 16:43:11 +02:00
gimp.scm
gkrellm.scm
gl.scm gnu: virtualgl: Update to 2.6. 2018-09-24 00:34:01 +02:00
glib.scm
gnome.scm gnu: eolie: Update to 0.9.38. 2018-09-27 19:56:31 +02:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm gnu: gnurl: Update to 7.61.1. 2018-09-12 16:02:39 -04:00
gnupg.scm
gnustep.scm
gnuzilla.scm gnu: icecat: Add fixes from mozilla-esr60 [security fixes]. 2018-10-04 21:35:01 -04:00
gobby.scm
golang.scm gnu: Go 1.11: Update to 1.11.1 2018-10-03 10:33:46 -04:00
gperf.scm
gprolog.scm gnu: gprolog: Update to 1.4.5. 2018-09-20 15:27:43 -04:00
gps.scm
graph.scm gnu: python-plotly: Add python-pandas to inputs. 2018-10-05 09:21:54 +02:00
graphics.scm gnu: openscenegraph: Update to 3.6.3. 2018-09-21 10:25:33 +02:00
graphviz.scm gnu: python-pydot: Update to 1.2.4. 2018-09-21 10:25:32 +02:00
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: guile-cairo: Update to 1.10.0. 2018-10-02 23:08:30 +02:00
guile-wm.scm
guile.scm gnu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779. 2018-10-04 13:22:02 -04:00
gv.scm
gxmessage.scm
ham-radio.scm
hardware.scm gnu: ddcutil: Update to 0.9.2. 2018-10-04 04:20:06 +02:00
haskell-check.scm gnu: ghc-tasty-golden: Update to 2.3.2. 2018-10-01 12:12:22 +02:00
haskell-crypto.scm ghc: Add ghc-ed25519. 2018-10-01 12:12:21 +02:00
haskell-web.scm gnu: Remove ghc-pandoc@1. 2018-10-01 12:12:22 +02:00
haskell.scm gnu: ghc-statistics: Fix build. 2018-10-01 12:12:23 +02:00
hexedit.scm gnu: hexedit: Update to 1.4.2. 2018-10-04 15:59:08 +02:00
hugs.scm
hurd.scm
ibus.scm gnu: ibus: Update to 1.5.19. 2018-09-25 11:20:32 +02:00
icu4c.scm
idris.scm gnu: idris: Update to 1.3.0. 2018-10-01 12:12:20 +02:00
idutils.scm
image-processing.scm gnu: opencv: Update to 3.4.3. 2018-10-04 09:48:45 +02:00
image-viewers.scm gnu: feh: Update to 2.28. 2018-09-19 15:20:21 +02:00
image.scm gnu: libiptcdata: Update to 1.0.5. 2018-09-24 00:34:01 +02:00
imagemagick.scm
inklingreader.scm
inkscape.scm
irc.scm
iso-codes.scm
java.scm gnu: Add java-fasterxml-jackson-modules-base-mrbean. 2018-10-04 03:05:10 +02:00
javascript.scm
jemalloc.scm
jrnl.scm
julia.scm gnu: julia: Update objconv input. 2018-09-09 16:43:10 +02:00
kde-frameworks.scm
kde.scm gnu: Krita: Update to 4.1.3. 2018-09-28 11:08:12 -04:00
kerberos.scm
key-mon.scm
kodi.scm gnu: kodi: Use INVOKE. 2018-09-21 15:03:48 +02:00
language.scm
ld-wrapper.in
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: LibreOffice: Fix "File > Open" crash on foreign distros. 2018-10-02 14:46:13 -04:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm gnu: perl-string-copyright: Update to 0.003006. 2018-10-04 06:28:26 +02:00
lighting.scm
linux.scm gnu: linux-libre: Update to 4.18.12. 2018-10-04 20:36:32 -04:00
lirc.scm
lisp.scm gnu: sbcl-slynk: Fix the build. 2018-09-19 18:25:28 +02:00
llvm.scm gnu: python-llvmlite: Remove obsolete patch. 2018-09-14 15:12:03 +02:00
logging.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm gnu: lxterminal: Update to 0.3.2. 2018-09-24 18:10:48 +02:00
lxqt.scm
m4.scm
machine-learning.scm gnu: python2-scikit-learn: Fix check phase. 2018-09-20 15:56:59 +02:00
mail.scm gnu: imapfilter: Update to 2.6.12. 2018-10-04 06:28:26 +02:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mate.scm gnu: enchant: Update to 2.2.3. 2018-09-26 00:33:01 +02:00
maths.scm gnu: petsc-openmpi: Configure with support for MUMPS solver. 2018-10-04 18:21:17 -04:00
maven.scm
mc.scm
mcrypt.scm
medical.scm
mes.scm gnu: mes: Oops, use mirror://gnu download url. 2018-09-11 22:34:02 +02:00
messaging.scm gnu: mcabber: Update to 1.1.0 2018-09-28 23:28:03 +02:00
microcom.scm
mingw.scm
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: ncmpc: Update to 0.30. 2018-09-18 13:50:09 +02:00
mpi.scm gnu: hwloc: Update to 2.0.2. 2018-10-04 21:28:24 +02:00
mtools.scm gnu: mtools: Update to 4.0.19. 2018-09-30 13:37:38 +03:00
multiprecision.scm gnu: mpfr: Update home page. 2018-09-09 16:43:10 +02:00
music.scm gnu: yoshimi: Update to 1.5.9. 2018-09-27 21:52:07 +02:00
musl.scm gnu: musl: Update to 1.1.20. 2018-09-09 15:01:54 +02:00
nano.scm gnu: nano: Update to 3.1. 2018-09-24 00:33:59 +02:00
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: perl-socket6: Update to 0.29. 2018-10-01 23:02:40 +02:00
nfs.scm
nickle.scm gnu: nickle: Update to 2.82. 2018-10-04 06:28:25 +02:00
nim.scm
ninja.scm
node.scm gnu: Add Node LTS. 2018-09-26 00:33:01 +02:00
noweb.scm
ntp.scm
nutrition.scm gnu: gourmet: Use HTTPS home page. 2018-09-20 04:17:03 +02:00
nvi.scm
ocaml.scm gnu: ocaml-ssl: Don't use unstable tarball. 2018-09-24 18:10:46 +02:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm gnu: pocl: Update to 1.2. 2018-09-29 11:15:35 -04:00
openldap.scm gnu: 389-ds-base: Fix build. 2018-09-25 11:46:54 +02:00
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix: Update to 1d0be47. 2018-10-04 11:21:37 +02:00
parallel.scm gnu: parallel: Update to 20180922. 2018-09-24 00:34:00 +02:00
password-utils.scm
patchutils.scm quilt: Remove test workarounds. 2018-10-03 10:45:02 -05:00
pciutils.scm
pcre.scm
pdf.scm
pem.scm
perl-check.scm gnu: Add perl-mock-config. 2018-09-12 16:09:37 +02:00
perl-web.scm
perl.scm gnu: Add perl-devel-checklib. 2018-09-13 19:53:08 +02:00
photo.scm
php.scm gnu: php: Update to 7.2.10. 2018-09-15 21:06:08 +02:00
pkg-config.scm
plotutils.scm
polkit.scm
popt.scm
pretty-print.scm
printers.scm
profiling.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
pv.scm
python-crypto.scm gnu: python-paramiko: Update to 2.4.2 [security fixes]. 2018-09-21 13:18:42 +02:00
python-web.scm gnu: python-wsgiproxy2: Update to 0.4.5. 2018-09-25 11:46:54 +02:00
python.scm gnu: python-setproctitle: Use INVOKE. 2018-09-27 03:51:07 +02:00
qt.scm
ragel.scm
rails.scm gnu: Use INVOKE & return #t from Ruby package phases. 2018-09-20 04:17:04 +02:00
ratpoison.scm
rdesktop.scm
rdf.scm
re2c.scm gnu: re2c: Update to 1.1.1. 2018-10-01 23:02:40 +02:00
readline.scm
regex.scm
robotics.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: Use INVOKE & return #t from Ruby package phases. 2018-09-20 04:17:04 +02:00
rush.scm
rust.scm Revert 'gnu: rust: Remove unused "ar" setting.'. 2018-09-22 10:09:47 +02:00
samba.scm
sawfish.scm
scanner.scm
scheme.scm gnu: gambit-c: Update to 4.9.0. 2018-09-15 12:15:28 +02:00
screen.scm
scribus.scm
scsi.scm gnu: sg3-utils: Update to 1.44. 2018-09-20 04:17:02 +02:00
sdcc.scm
sdl.scm gnu: Add ghc-sdl2-image. 2018-10-01 12:12:23 +02:00
search.scm
security-token.scm gnu: ccid: Update to 1.4.30. 2018-09-20 04:50:34 +02:00
selinux.scm
serialization.scm
serveez.scm
shells.scm Use INVOKE in (gnu packages shells). 2018-09-20 04:17:04 +02:00
shellutils.scm gnu: Add hstr. 2018-09-10 17:47:52 +02:00
simh.scm
simulation.scm
skarnet.scm gnu: s6: Update to 2.7.2.1. 2018-09-21 13:18:41 +02:00
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
spice.scm gnu: spice: Update to 0.14.1 [fixes CVE-2018-10873]. 2018-09-11 14:12:53 +02:00
ssh.scm gnu: Add ClusterShell. 2018-09-13 19:12:25 +02:00
sssd.scm
stalonetray.scm
statistics.scm gnu: r-chron: Update to 2.3-53. 2018-09-09 22:26:02 +02:00
stb.scm
storage.scm
suckless.scm gnu: fortify-headers: Update to 1.0. 2018-09-10 18:22:00 +02:00
swig.scm
sync.scm
syncthing.scm gnu: Syncthing: Update to 0.14.51. 2018-10-02 15:40:52 -04:00
syndication.scm gnu: newsboat: Update to 2.13. 2018-09-28 18:23:00 +02:00
synergy.scm
task-management.scm
tbb.scm
tcl.scm
telephony.scm Use INVOKE in (gnu packages telephony). 2018-09-20 04:17:03 +02:00
terminals.scm
terraform.scm
tex.scm gnu: Update texmaker to 5.0.2. 2018-09-09 21:59:08 +02:00
texinfo.scm
text-editors.scm gnu: kakoune: Use HTTPS home page. 2018-09-10 22:54:36 +02:00
textutils.scm gnu: recode: Update to 3.7.1. 2018-10-01 23:02:40 +02:00
time.scm gnu: python-iso8601: Update to 0.1.12. 2018-09-15 03:36:36 +02:00
tls.scm gnu: hiawatha: Update to 10.8.3. 2018-10-04 18:34:29 +02:00
tmux.scm
tor.scm gnu: tor: Update to 0.3.4.8. 2018-09-10 22:54:35 +02:00
toys.scm
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm
uucp.scm
valgrind.scm
version-control.scm gnu: git-annex: Update to 6.20180926. 2018-10-01 12:12:23 +02:00
video.scm gnu: mpv: Update to 0.29.1. 2018-10-04 08:13:57 +02:00
vim.scm
virtualization.scm gnu: umoci: Update to 0.4.2. 2018-09-15 03:36:36 +02:00
vpn.scm gnu: sshuttle: Rely on $PATH to find a POSIX sh. 2018-09-30 21:15:23 +02:00
vulkan.scm
w3m.scm
wdiff.scm
web-browsers.scm
web.scm gnu: hiawatha: Set sane run-time directory defaults. 2018-10-04 21:28:24 +02:00
webkit.scm gnu: webkitgtk: Remove obsolete phase. 2018-09-26 00:33:01 +02:00
wget.scm
wicd.scm
wine.scm gnu: wine-staging: Update to 3.17. 2018-10-01 14:55:56 +02:00
wm.scm gnu: ghc-xmonad-contrib: Fix build. 2018-10-01 12:12:23 +02:00
wordnet.scm
wv.scm
wxwidgets.scm gnu: wxwidgets: Update to 3.0.4. 2018-09-21 19:52:26 +02:00
xdisorg.scm Use INVOKE in (gnu packages xdisorg). 2018-09-20 04:17:04 +02:00
xfce.scm
xfig.scm
xiph.scm gnu: opusfile: Update to 0.11. 2018-09-20 04:50:33 +02:00
xml.scm gnu: html-xml-utils: Update to 7.7. 2018-10-04 15:59:08 +02:00
xnee.scm
xorg.scm gnu: xpra: Update to 2.3.4. 2018-09-23 13:15:38 +02:00
zile.scm