2784 lines
102 KiB
Scheme
2784 lines
102 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
|
||
;;; Copyright © 2016 John Darrington <jmd@gnu.org>
|
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;;; Copyright © 2018–2022 Tobias Geerinckx-Rice <me@tobias.gr>
|
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;;; Copyright © 2018, 2019, 2020, 2021, 2022 Efraim Flashner <efraim@flashner.co.il>
|
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;;; Copyright © 2019 by Amar Singh <nly@disroot.org>
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;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in>
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||
;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net>
|
||
;;; Copyright © 2021, 2022 Sharlatan Hellseher <sharlatanus@gmail.com>
|
||
;;; Copyright © 2021, 2022 Vinicius Monego <monego@posteo.net>
|
||
;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
|
||
;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
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||
;;;
|
||
;;; This file is part of GNU Guix.
|
||
;;;
|
||
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
||
;;; under the terms of the GNU General Public License as published by
|
||
;;; the Free Software Foundation; either version 3 of the License, or (at
|
||
;;; your option) any later version.
|
||
;;;
|
||
;;; GNU Guix is distributed in the hope that it will be useful, but
|
||
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
||
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||
;;; GNU General Public License for more details.
|
||
;;;
|
||
;;; You should have received a copy of the GNU General Public License
|
||
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
|
||
|
||
(define-module (gnu packages astronomy)
|
||
#:use-module ((guix licenses) #:prefix license:)
|
||
#:use-module (gnu packages algebra)
|
||
#:use-module (gnu packages autotools)
|
||
#:use-module (gnu packages base)
|
||
#:use-module (gnu packages bison)
|
||
#:use-module (gnu packages boost)
|
||
#:use-module (gnu packages check)
|
||
#:use-module (gnu packages cmake)
|
||
#:use-module (gnu packages compression)
|
||
#:use-module (gnu packages curl)
|
||
#:use-module (gnu packages databases)
|
||
#:use-module (gnu packages documentation)
|
||
#:use-module (gnu packages flex)
|
||
#:use-module (gnu packages fontutils)
|
||
#:use-module (gnu packages gcc)
|
||
#:use-module (gnu packages gettext)
|
||
#:use-module (gnu packages gl)
|
||
#:use-module (gnu packages glib)
|
||
#:use-module (gnu packages gnome)
|
||
#:use-module (gnu packages gps)
|
||
#:use-module (gnu packages graphviz)
|
||
#:use-module (gnu packages gtk)
|
||
#:use-module (gnu packages image)
|
||
#:use-module (gnu packages image-processing)
|
||
#:use-module (gnu packages libevent)
|
||
#:use-module (gnu packages libusb)
|
||
#:use-module (gnu packages lua)
|
||
#:use-module (gnu packages maths)
|
||
#:use-module (gnu packages multiprecision)
|
||
#:use-module (gnu packages ncurses)
|
||
#:use-module (gnu packages netpbm)
|
||
#:use-module (gnu packages perl)
|
||
#:use-module (gnu packages photo)
|
||
#:use-module (gnu packages pkg-config)
|
||
#:use-module (gnu packages pretty-print)
|
||
#:use-module (gnu packages python)
|
||
#:use-module (gnu packages python-build)
|
||
#:use-module (gnu packages python-check)
|
||
#:use-module (gnu packages python-compression)
|
||
#:use-module (gnu packages python-crypto)
|
||
#:use-module (gnu packages python-science)
|
||
#:use-module (gnu packages python-web)
|
||
#:use-module (gnu packages python-xyz)
|
||
#:use-module (gnu packages qt)
|
||
#:use-module (gnu packages readline)
|
||
#:use-module (gnu packages sphinx)
|
||
#:use-module (gnu packages textutils)
|
||
#:use-module (gnu packages time)
|
||
#:use-module (gnu packages tls)
|
||
#:use-module (gnu packages version-control)
|
||
#:use-module (gnu packages video)
|
||
#:use-module (gnu packages wxwidgets)
|
||
#:use-module (gnu packages xiph)
|
||
#:use-module (gnu packages xml)
|
||
#:use-module (gnu packages xorg)
|
||
#:use-module (gnu packages)
|
||
#:use-module (guix build-system cmake)
|
||
#:use-module (guix build-system copy)
|
||
#:use-module (guix build-system gnu)
|
||
#:use-module (guix build-system meson)
|
||
#:use-module (guix build-system python)
|
||
#:use-module (guix build-system pyproject)
|
||
#:use-module (guix download)
|
||
#:use-module (guix gexp)
|
||
#:use-module (guix git-download)
|
||
#:use-module (guix packages)
|
||
#:use-module (guix utils)
|
||
#:use-module (ice-9 match)
|
||
#:use-module (srfi srfi-1))
|
||
|
||
(define-public alfa
|
||
(package
|
||
(name "alfa")
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||
(version "2.2")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/rwesson/ALFA")
|
||
(commit (string-append "v" version))))
|
||
(sha256
|
||
(base32
|
||
"0aqxqar36822mh373awsl79j7zn8vik4yddyydsxv0c76gn4i2k3"))
|
||
(file-name (git-file-name name version))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
(list #:parallel-build? #f
|
||
#:make-flags #~(list (string-append "PREFIX="
|
||
#$output)
|
||
(string-append "VERSION="
|
||
#$version))
|
||
#:phases #~(modify-phases %standard-phases
|
||
(delete 'configure)
|
||
(delete 'check)
|
||
(add-after 'install 'post-install-check
|
||
(lambda* (#:key tests? #:allow-other-keys)
|
||
(when tests?
|
||
(invoke "make" "fittest")))))))
|
||
(inputs (list cfitsio gfortran))
|
||
(home-page "https://nebulousresearch.org/codes/alfa/")
|
||
(synopsis "Automated line fitting algorithm")
|
||
(description
|
||
"This package provides @acronym{ALFA, Automatic line fitting algorithm},
|
||
which can identify and fit hundreds of lines in emission line spectra in just a
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||
few seconds with following features:
|
||
@itemize
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||
|
||
@item A population of synthetic spectra is generated using a reference line
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||
catalogue.
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||
|
||
@item The goodness of fit for each synthetic spectrum is calculated. The best
|
||
sets of parameters are retained and the rest discarded.
|
||
|
||
@item A new population of synthetic spectra is obtained by averaging pairs of
|
||
the best performers.
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||
|
||
@item A small fraction of the parameters of the lines in the new generation are
|
||
randomly altered.
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||
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||
@item The process repeats until a good fit is obtained.
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||
@end itemize")
|
||
(license license:gpl3)))
|
||
|
||
(define-public aocommon
|
||
(let ((commit "7329a075271edab8f6264db649e81e62b2b6ae5e")
|
||
(revision "1"))
|
||
(package
|
||
(name "aocommon")
|
||
(version (git-version "0.0.0" revision commit))
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://gitlab.com/aroffringa/aocommon")
|
||
(commit commit)))
|
||
(sha256
|
||
(base32 "0qcfax6pbzs0yigy0x8xibrkk539wm2pbvjsb4lh50fybir02nix"))
|
||
(file-name (git-file-name name version))))
|
||
(build-system copy-build-system)
|
||
(arguments
|
||
(list #:install-plan
|
||
#~'(("include/aocommon" "include/aocommon"))))
|
||
(home-page "https://gitlab.com/aroffringa/aocommon")
|
||
(synopsis "Collection of functionality that is reused in astronomical applications")
|
||
(description
|
||
"This package provides source-only AOCommon collection of functionality that is
|
||
reused in several astronomical applications, such as @code{wsclean},
|
||
@code{aoflagger}, @code{DP3} and @code{everybeam}.")
|
||
(license license:gpl3+))))
|
||
|
||
(define-public calceph
|
||
(package
|
||
(name "calceph")
|
||
(version "3.5.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://www.imcce.fr/content/medias/recherche/equipes/asd/calceph/calceph-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "078wn773pwf4pg9m0h0l00g4aq744pq1rb6kz6plgdpzp3hhpk1k"))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
(list gfortran))
|
||
(home-page "https://www.imcce.fr/inpop/calceph")
|
||
(properties `((release-monitoring-url . ,home-page)))
|
||
(synopsis "Astronomical library to access the binary planetary ephemeris files")
|
||
(description
|
||
"The CALCEPH Library is designed to access the binary planetary ephemeris files,
|
||
such INPOPxx and JPL DExxx ephemeris files, (called @code{original JPL binary} or
|
||
@code{INPOP 2.0 or 3.0 binary} ephemeris files in the next sections) and the SPICE
|
||
kernel files (called @code{SPICE} ephemeris files in the next sections). At the
|
||
moment, supported SPICE files are:
|
||
|
||
@itemize
|
||
@item text Planetary Constants Kernel (KPL/PCK) files;
|
||
@item binary PCK (DAF/PCK) files;
|
||
@item binary SPK (DAF/SPK) files containing segments of type 1, 2, 3, 5, 8, 9,
|
||
12, 13, 17, 18, 19, 20, 21, 102, 103 and 120;
|
||
@item meta kernel (KPL/MK) files;
|
||
@item frame kernel (KPL/FK) files (only basic support).
|
||
@end itemize\n")
|
||
(license license:cecill)))
|
||
|
||
(define-public aoflagger
|
||
(package
|
||
(name "aoflagger")
|
||
(version "3.2.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://gitlab.com/aroffringa/aoflagger")
|
||
(commit (string-append "v" version))))
|
||
(sha256
|
||
(base32 "1dcbfrbiybhpbypna2xhddx1wk7yifh38ha2r6p5rzsikzwlsin1"))
|
||
(patches
|
||
(search-patches "aoflagger-use-system-provided-pybind11.patch"))
|
||
(file-name (git-file-name name version))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
(list
|
||
;; XXX: Tests require external files download from
|
||
;; https://www.astron.nl/citt/ci_data/aoflagger/
|
||
;; FIXME: runtest is not found
|
||
#:tests? #f
|
||
#:configure-flags
|
||
#~(list (string-append "-DCASACORE_ROOT_DIR="
|
||
#$(this-package-input "casacore")))
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
;; aocommon and pybind11 are expected to be found as git submodules,
|
||
;; link them before build.
|
||
(add-after 'unpack 'link-submodule-package
|
||
(lambda _
|
||
(rmdir "external/aocommon")
|
||
(symlink #$(this-package-native-input "aocommon")
|
||
(string-append (getcwd) "/external/aocommon")))))))
|
||
(native-inputs
|
||
(list aocommon
|
||
boost
|
||
pkg-config
|
||
python
|
||
pybind11))
|
||
(inputs
|
||
(list casacore
|
||
cfitsio
|
||
fftw
|
||
gsl
|
||
gtkmm-3
|
||
hdf5
|
||
lapack
|
||
libpng
|
||
libsigc++
|
||
libxml2
|
||
lua
|
||
openblas
|
||
zlib))
|
||
(home-page "https://gitlab.com/aroffringa/aoflagger")
|
||
(synopsis "Astronomical tool that can find and remove radio-frequency interference")
|
||
(description
|
||
"AOFlagger is a tool that can find and remove radio-frequency
|
||
interference (RFI) in radio astronomical observations. It can make use of Lua
|
||
scripts to make flagging strategies flexible, and the tools are applicable to a
|
||
wide set of telescopes.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public casacore
|
||
(package
|
||
(name "casacore")
|
||
(version "3.4.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/casacore/casacore")
|
||
(commit (string-append "v" version))))
|
||
(sha256
|
||
(base32
|
||
"05ar5gykgh4dm826xplj5ri5rw7znhxrvin2l67a3mjwfys7r2a0"))
|
||
(file-name (git-file-name name version))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
(list
|
||
;; Note: There are multiple failures in
|
||
;; tests which require additional measures data. They are
|
||
;; distributed via FTP without any license:
|
||
;; ftp://ftp.astron.nl/outgoing/Measures/
|
||
;; TODO: Check how to fix tests.
|
||
#:tests? #f
|
||
#:parallel-build? #t
|
||
#:configure-flags
|
||
#~(list "-DBUILD_PYTHON3=ON"
|
||
"-DBUILD_PYTHON=OFF"
|
||
"-DBUILD_TESTING=TRUE"
|
||
"-DUSE_HDF5=ON"
|
||
"-DUSE_OPENMP=OFF"
|
||
"-DUSE_THREADS=ON"
|
||
(string-append "-DDATA_DIR=" #$output "/data")
|
||
(string-append "-DPYTHON3_EXECUTABLE="
|
||
#$(this-package-input "python") "/bin")
|
||
(string-append "-DPYTHON3_INCLUDE_DIR="
|
||
#$(this-package-input "python") "/include")
|
||
(string-append "-DPYTHON3_LIBRARY="
|
||
#$(this-package-input "python") "/lib"))
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-after 'unpack 'set-env
|
||
(lambda _
|
||
(setenv "HOME" "/tmp")))
|
||
(add-after 'unpack 'use-absolute-rm
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(substitute* "casa/OS/test/tFile.run"
|
||
(("/bin/rm")
|
||
(search-input-file inputs "/bin/rm")))))
|
||
(add-after 'unpack 'use-absolute-python3
|
||
(lambda _
|
||
(substitute* "build-tools/casacore_floatcheck"
|
||
(("#!/usr/bin/env python")
|
||
(string-append "#!" (which "python3"))))))
|
||
;; NOTE: (Sharlatan-20220611T200837+0100): Workaround for casacore
|
||
;; tests stuck with missing "qsub" issue.
|
||
;; https://github.com/casacore/casacore/issues/1122
|
||
(add-after 'unpack 'patch-pre-test-checks
|
||
(lambda _
|
||
(substitute* "build-tools/casacore_assay"
|
||
(("QSUBP=.*$") "QSUBP=\n")
|
||
(("YODP=.*$") "YODP=\n")))))))
|
||
(native-inputs
|
||
(list bison
|
||
boost
|
||
flex
|
||
readline))
|
||
(inputs
|
||
(list cfitsio
|
||
fftw
|
||
fftwf
|
||
gfortran
|
||
hdf5
|
||
lapack
|
||
ncurses
|
||
openblas
|
||
python
|
||
python-numpy
|
||
wcslib))
|
||
(home-page "https://casacore.github.io/casacore/")
|
||
(synopsis "Suite of C++ libraries for radio astronomy data processing")
|
||
(description
|
||
"The casacore package contains the core libraries of the old
|
||
AIPS++/CASA (Common Astronomy Software Application) package. This split was
|
||
made to get a better separation of core libraries and applications.
|
||
@url{https://casa.nrao.edu/, CASA} is now built on top of Casacore.")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public cfitsio
|
||
(package
|
||
(name "cfitsio")
|
||
(version "4.2.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
|
||
"cfitsio-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "128qsv2q0f0g714ahlsixiikvvbwxi9bg9q9pcr5cd3f7wdkv9gb"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
(list
|
||
#:configure-flags
|
||
#~(list (string-append "--with-bzip2=" #$(this-package-input "bzip2")))
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-after 'unpack 'patch-paths
|
||
(lambda _
|
||
(substitute* "Makefile.in" (("/bin/") ""))))
|
||
(delete 'check)
|
||
;; TODO: Testing steps are sourced from docs/fitsio.pdf, implement
|
||
;; the logic in Guile in the future.
|
||
(add-after 'install 'post-install-check
|
||
(lambda* (#:key tests? #:allow-other-keys)
|
||
(when tests?
|
||
(invoke "make" "testprog")
|
||
(with-output-to-file "testprog.lis" (lambda _(invoke "./testprog")))
|
||
(invoke "diff" "-r" "testprog.lis" "testprog.out")
|
||
(invoke "cmp" "-l" "testprog.fit" "testprog.std")))))))
|
||
(native-inputs (list gfortran))
|
||
(inputs (list bzip2 curl zlib))
|
||
(home-page "https://heasarc.gsfc.nasa.gov/fitsio/fitsio.html")
|
||
(synopsis "Library for reading and writing FITS files")
|
||
(description "CFITSIO provides simple high-level routines for reading and
|
||
writing @dfn{FITS} (Flexible Image Transport System) files that insulate the
|
||
programmer from the internal complexities of the FITS format. CFITSIO also
|
||
provides many advanced features for manipulating and filtering the information
|
||
in FITS files.")
|
||
(license (license:non-copyleft "file://License.txt"
|
||
"See License.txt in the distribution."))))
|
||
|
||
(define-public python-fitsio
|
||
(package
|
||
(name "python-fitsio")
|
||
(version "1.1.8")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "fitsio" version))
|
||
(sha256
|
||
(base32 "1y80hgvlkjz1bijfyb2j03853yc1kc63yrf9ab7as31ad2r6kxb1"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
;; Remove the bundled cfitsio
|
||
`(begin
|
||
(delete-file-recursively "cfitsio3490")
|
||
(substitute* "MANIFEST.in"
|
||
(("recursive-include cfitsio3490.*$\n") ""))))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'unbundle-cfitsio
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(let* ((cfitsio (assoc-ref inputs "cfitsio"))
|
||
(includedir (string-append "\"" cfitsio "/include\""))
|
||
(libdir (string-append "\"" cfitsio "/lib\"")))
|
||
;; Use Guix' cfitsio instead of the bundled one
|
||
(substitute* "setup.py"
|
||
(("self.use_system_fitsio = False") "pass")
|
||
(("self.system_fitsio_includedir = None") "pass")
|
||
(("self.system_fitsio_libdir = None") "pass")
|
||
(("self.use_system_fitsio") "True")
|
||
(("self.system_fitsio_includedir") includedir)
|
||
(("self.system_fitsio_libdir") libdir))))))))
|
||
(inputs (list curl-minimal))
|
||
(propagated-inputs
|
||
(list python-numpy cfitsio))
|
||
(home-page "https://github.com/esheldon/fitsio")
|
||
(synopsis
|
||
"Python library to read from and write to FITS files")
|
||
(description
|
||
"This package provides a Python library for reading from and writing
|
||
to @acronym{FITS, Flexible Image Transport System} files using the
|
||
CFITSIO library. Among other things, it can
|
||
|
||
@itemize
|
||
@item read and write image, binary, and ascii table extensions;
|
||
|
||
@item read arbitrary subsets of tables in a lazy manner;
|
||
|
||
@item query the rows and columns of a table;
|
||
|
||
@item read and write header keywords;
|
||
|
||
@item read and write Gzip files.
|
||
@end itemize")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public qfits
|
||
(package
|
||
(name "qfits")
|
||
(version "6.2.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append "ftp://ftp.eso.org/pub/qfits/qfits-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0m2b21mim3a7wgfg3ph2w5hv7mdvr03jmmhzipc0wcahijglcw9j"))))
|
||
(build-system gnu-build-system)
|
||
(home-page "https://www.eso.org/sci/software/eclipse/qfits/")
|
||
(synopsis "C library offering access to astronomical FITS files")
|
||
(description
|
||
"@code{qfits} is a C library giving access to FITS file internals, both
|
||
for reading and writing.")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public erfa
|
||
(package
|
||
(name "erfa")
|
||
(version "2.0.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/liberfa/erfa")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0s9dpj0jdkqcg552f00jhd722czji4pffabmpys5pgi6djckq4f4"))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
(list automake autoconf libtool pkg-config))
|
||
(home-page "https://github.com/liberfa/erfa")
|
||
(synopsis "Essential Routines for Fundamental Astronomy")
|
||
(description
|
||
"The @acronym{ERFA, Essential Routines for Fundamental Astronomy} C library
|
||
contains key algorithms for astronomy, and is based on the @acronym{SOFA,
|
||
Standards of Fundamental Astronomy} library published by the @acronym{IAU,
|
||
International Astronomical Union}.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public eye
|
||
(package
|
||
(name "eye")
|
||
(version "1.4.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.astromatic.net/download/eye/"
|
||
"eye-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "092qhzcbrkcfidbx4bv9wz42w297n80jk7a6kwyi9a3fjfz81d7k"))))
|
||
(build-system gnu-build-system)
|
||
(home-page "https://www.astromatic.net/software/eye")
|
||
(synopsis "Small image feature detector using machine learning")
|
||
(description
|
||
"In EyE (Enhance Your Extraction) an artificial neural network connected to
|
||
pixels of a moving window (retina) is trained to associate these input stimuli
|
||
to the corresponding response in one or several output image(s). The resulting
|
||
filter can be loaded in SExtractor to operate complex, wildly non-linear filters
|
||
on astronomical images. Typical applications of EyE include adaptive filtering,
|
||
feature detection and cosmetic corrections.")
|
||
(license license:cecill)))
|
||
|
||
(define-public wcslib
|
||
(package
|
||
(name "wcslib")
|
||
(version "7.12")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"ftp://ftp.atnf.csiro.au/pub/software/wcslib/wcslib-" version
|
||
".tar.bz2"))
|
||
(sha256
|
||
(base32 "1m3bx6gh5w3c7vvsqcki0x20mg8lilg13m0i8nh7za89w58dxy4w"))))
|
||
(inputs
|
||
(list cfitsio))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
(list
|
||
#:configure-flags
|
||
#~(list (string-append "--with-cfitsiolib="
|
||
#$(this-package-input "cfitsio") "/lib")
|
||
(string-append "--with-cfitsioinc="
|
||
#$(this-package-input "cfitsio") "/include"))
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(delete 'install-license-files) ; installed by ‘make install’
|
||
(add-before 'configure 'patch-/bin/sh
|
||
(lambda _
|
||
(substitute* "makedefs.in"
|
||
(("/bin/sh") "sh")))))))
|
||
;; TODO: Fix build with gfortran and pack missing optional pgplot.
|
||
;; (inputs (list gfortran pgplot))
|
||
(home-page "https://www.atnf.csiro.au/people/mcalabre/WCS")
|
||
(synopsis "Library which implements the FITS WCS standard")
|
||
(description "The FITS \"World Coordinate System\" (@dfn{WCS}) standard
|
||
defines keywords and usage that provide for the description of astronomical
|
||
coordinate systems in a @dfn{FITS} (Flexible Image Transport System) image
|
||
header.")
|
||
(license license:lgpl3+)))
|
||
|
||
(define-public weightwatcher
|
||
(package
|
||
(name "weightwatcher")
|
||
(version "1.12")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.astromatic.net/download/weightwatcher/"
|
||
"weightwatcher-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1zaqd8d9rpgcwjsp92q3lkfaa22i20gppb91dz34ym54swisjc2p"))))
|
||
(build-system gnu-build-system)
|
||
(home-page "https://www.astromatic.net/software/weightwatcher")
|
||
(synopsis "Weight-map/flag-map multiplexer and rasteriser")
|
||
(description
|
||
"Weightwatcher is a program hat combines weight-maps, flag-maps and
|
||
polygon data in order to produce control maps which can directly be used in
|
||
astronomical image-processing packages like Drizzle, Swarp or SExtractor.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public gnuastro
|
||
(package
|
||
(name "gnuastro")
|
||
(version "0.19")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://gnu/gnuastro/gnuastro-"
|
||
version ".tar.lz"))
|
||
(sha256
|
||
(base32
|
||
"192q3i4zlfmwfcchlf9lnpfgys9dssh7npr5qx0gzn3d2fri0xbz"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
'(#:configure-flags '("--disable-static")))
|
||
(inputs
|
||
(list cfitsio
|
||
curl-minimal
|
||
gsl
|
||
libgit2
|
||
libjpeg-turbo
|
||
libtiff
|
||
wcslib
|
||
zlib))
|
||
(native-inputs
|
||
(list libtool lzip))
|
||
(home-page "https://www.gnu.org/software/gnuastro/")
|
||
(synopsis "Astronomy utilities")
|
||
(description "The GNU Astronomy Utilities (Gnuastro) is a suite of
|
||
programs for the manipulation and analysis of astronomical data.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public sextractor
|
||
(package
|
||
(name "sextractor")
|
||
(version "2.25.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/astromatic/sextractor")
|
||
(commit version)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0q69n3nyal57h3ik2xirwzrxzljrwy9ivwraxzv9566vi3n4z5mw"))))
|
||
(build-system gnu-build-system)
|
||
;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing
|
||
;; due to missing shared library which required on configure phase. Switch
|
||
;; build to use `openblas' instead. It requires FFTW with single precision
|
||
;; `fftwf'.
|
||
(arguments
|
||
`(#:configure-flags
|
||
(list
|
||
"--enable-openblas"
|
||
(string-append
|
||
"--with-openblas-libdir=" (assoc-ref %build-inputs "openblas") "/lib")
|
||
(string-append
|
||
"--with-openblas-incdir=" (assoc-ref %build-inputs "openblas") "/include")
|
||
(string-append
|
||
"--with-fftw-libdir=" (assoc-ref %build-inputs "fftw") "/lib")
|
||
(string-append
|
||
"--with-fftw-incdir=" (assoc-ref %build-inputs "fftw") "/include"))))
|
||
(native-inputs
|
||
(list autoconf automake libtool))
|
||
(inputs
|
||
`(("openblas" ,openblas)
|
||
("fftw" ,fftwf)))
|
||
(home-page "https://www.astromatic.net/software/sextractor")
|
||
(synopsis "Extract catalogs of sources from astronomical images")
|
||
(description
|
||
"SExtractor is a program that builds a catalogue of objects from an
|
||
astronomical image. Although it is particularly oriented towards reduction of
|
||
large scale galaxy-survey data, it can perform reasonably well on moderately
|
||
crowded star fields.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public siril
|
||
(package
|
||
(name "siril")
|
||
(version "1.0.6")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://gitlab.com/free-astro/siril")
|
||
(commit version)))
|
||
(sha256
|
||
(base32
|
||
"0iqxb5zmjyygg4b6lwlq8z82mngxg7kjjpahhzk52m0cypfq0l18"))
|
||
(file-name (git-file-name name version))))
|
||
(build-system meson-build-system)
|
||
(native-inputs (list cmake git glib libconfig pkg-config))
|
||
(inputs (list cfitsio
|
||
exiv2
|
||
fftwf
|
||
gsl
|
||
gtk+
|
||
json-glib
|
||
libraw
|
||
librtprocess
|
||
opencv))
|
||
(home-page "https://siril.org/")
|
||
(synopsis "Image processing software for amateur astronomy")
|
||
(description
|
||
"This package provides an astronomical image processing tool - SIRIL. It is
|
||
specially tailored for noise reduction and improving the signal/noise ratio of
|
||
an image from multiple captures, as required in astronomy. SIRIL can align
|
||
automatically or manually, stack and enhance pictures from various file formats,
|
||
even image sequence files (films and SER files). It works well with limited
|
||
system resources, like in embedded platforms, but is also very fast when run on
|
||
more powerful computers and provides conversion to FITS from a large number of
|
||
image formats.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public splash
|
||
(package
|
||
(name "splash")
|
||
(version "3.5.1")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/danieljprice/splash")
|
||
(commit (string-append "v" version))))
|
||
(sha256
|
||
(base32
|
||
"12s3w96wzd4zpxw4adzhalkr57fgdk7cjp6bj596jnd87pz3rhyd"))
|
||
(file-name (git-file-name name version))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
;; FIXME: Tests failed
|
||
;; Issue submited upstream https://github.com/danieljprice/splash/issues/67
|
||
;;
|
||
;; make: *** No rule to make target 'test_interpolate3D.o', needed by 'test1'. Stop.
|
||
;;
|
||
(list #:tests? #f
|
||
#:parallel-build? #f ;parallel build fails
|
||
#:make-flags #~(list "SYSTEM=gfortran" "PREFIX="
|
||
(string-append "GIZA_DIR="
|
||
#$(this-package-input "giza"))
|
||
(string-append "DESTDIR="
|
||
#$output))
|
||
#:phases #~(modify-phases %standard-phases
|
||
(delete 'configure)
|
||
(add-before 'install 'create-install-dirrectories
|
||
(lambda _
|
||
(mkdir-p (string-append #$output "/bin")))))))
|
||
(native-inputs (list gfortran pkg-config perl python-wrapper))
|
||
(inputs (list cairo cfitsio giza))
|
||
(home-page "https://users.monash.edu.au/~dprice/splash/")
|
||
(synopsis
|
||
"Astrophysical visualisation tool for smoothed particle hydrodynamics")
|
||
(description
|
||
"SPLASH is visualisation tool for Smoothed Particle Hydrodynamics (SPH)
|
||
simulations in one, two and three dimensions, developed mainly for
|
||
astrophysics. It uses a command-line menu but data can be manipulated
|
||
interactively in the plotting window.")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public skymaker
|
||
(package
|
||
(name "skymaker")
|
||
(version "3.10.5")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.astromatic.net/download/skymaker/"
|
||
"skymaker-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "03zvx7c89plp9559niqv5532r233kza3ir992rg3nxjksqmrqvx1"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
`(#:configure-flags
|
||
(list
|
||
(string-append
|
||
"--with-fftw-libdir=" (assoc-ref %build-inputs "fftw") "/lib")
|
||
(string-append
|
||
"--with-fftw-incdir=" (assoc-ref %build-inputs "fftw") "/include"))))
|
||
(inputs
|
||
`(("fftw" ,fftwf)))
|
||
(home-page "https://www.astromatic.net/software/skymaker")
|
||
(synopsis "Astronomical image simulator")
|
||
(description
|
||
"SkyMaker is a program that simulates astronomical images. It accepts
|
||
object lists in ASCII generated by the Stuff program to produce realistic
|
||
astronomical fields. SkyMaker is part of the EFIGI
|
||
(@url{https://www.astromatic.net/projects/efigi}) development project.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public stackistry
|
||
(package
|
||
(name "stackistry")
|
||
(version "0.3.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/GreatAttractor/stackistry")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0rz29v33n0x0k40hv3v79ym5ylch1v0pbph4i21809gz2al5p7dq"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
`(#:make-flags
|
||
(list
|
||
(string-append
|
||
"SKRY_INCLUDE_PATH=" (assoc-ref %build-inputs "libskry") "/include")
|
||
(string-append
|
||
"SKRY_LIB_PATH=-L" (assoc-ref %build-inputs "libskry") "/lib")
|
||
(string-append
|
||
"LIBAV_INCLUDE_PATH=" (assoc-ref %build-inputs "ffmpeg") "/include"))
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
;; no configure and tests are provided
|
||
(delete 'configure)
|
||
(delete 'check)
|
||
(add-after 'unpack 'fix-paths
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(substitute* "src/main.cpp"
|
||
(("\"\\.\\.\", \"lang\"")
|
||
"\"../share/stackistry\", \"lang\""))
|
||
(substitute* "src/utils.cpp"
|
||
(("\"\\.\\.\", \"icons\"")
|
||
"\"../share/stackistry\", \"icons\""))
|
||
#t))
|
||
(replace 'install
|
||
;; The Makefile lacks an ‘install’ target.
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((out (assoc-ref outputs "out"))
|
||
(bin (string-append out "/bin"))
|
||
(icons (string-append out "/share/stackistry/icons"))
|
||
(lang (string-append out "/share/stackistry/lang")))
|
||
(copy-recursively "bin" bin)
|
||
(copy-recursively "icons" icons)
|
||
(copy-recursively "lang" lang))
|
||
#t)))))
|
||
(native-inputs
|
||
(list pkg-config))
|
||
(inputs
|
||
(list gtkmm-3 libskry ffmpeg-4))
|
||
(home-page "https://github.com/GreatAttractor/stackistry")
|
||
(synopsis "Astronomical lucky imaging/image stacking tool")
|
||
(description
|
||
"Stackistry implements the lucky imaging principle of astronomical
|
||
imaging: creating a high-quality still image out of a series of many (possibly
|
||
thousands) low quality ones (blurred, deformed, noisy). The resulting image
|
||
stack typically requires post-processing, including sharpening (e.g. via
|
||
deconvolution). Such post-processing is not performed by Stackistry.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public stellarium
|
||
(package
|
||
(name "stellarium")
|
||
(version "1.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/Stellarium/stellarium")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1655lz848k7m4vqs7n3vxjwn5n4pkykwl6x7nbanqcqzlixm5xnk"))))
|
||
(build-system cmake-build-system)
|
||
;; TODO: Complete documentation build and split into dedicated outputs.
|
||
(arguments
|
||
(list
|
||
;; FIXME: Tests keep failing on 100% when preparing test-suit for INDI.
|
||
#:tests? #f
|
||
#:test-target "test"
|
||
#:configure-flags
|
||
#~(list "-DENABLE_GPS=1"
|
||
;; TODO: Enable when all of the dependencies are availalbe for Qt6.
|
||
"-DENABLE_QT6=0"
|
||
;; TODO: Pack missing in Guix https://10110111.github.io/CalcMySky/
|
||
"-DENABLE_SHOWMYSKY=0"
|
||
"-DENABLE_TESTING=0"
|
||
(string-append "-DCMAKE_CXX_FLAGS=-isystem "
|
||
#$(this-package-input "qtserialport") "/include/qt5"))
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-before 'check 'set-offscreen-display
|
||
(lambda _
|
||
(setenv "QT_QPA_PLATFORM" "offscreen")
|
||
(setenv "HOME" "/tmp"))))))
|
||
(inputs
|
||
(list gpsd
|
||
indi
|
||
libnova
|
||
openssl
|
||
qtbase-5
|
||
qtcharts
|
||
qtlocation
|
||
qtmultimedia-5
|
||
qtpositioning
|
||
qtscript
|
||
qtserialport
|
||
qttranslations
|
||
qtwebengine-5
|
||
qxlsx
|
||
zlib))
|
||
(native-inputs
|
||
(list doxygen
|
||
gettext-minimal
|
||
graphviz
|
||
mesa
|
||
perl
|
||
python-wrapper
|
||
qttools-5))
|
||
(home-page "https://stellarium.org/")
|
||
(synopsis "3D sky viewer")
|
||
(description
|
||
"Stellarium is a planetarium. It shows a realistic sky in
|
||
3D, just like what you see with the naked eye, binoculars, or a telescope. It
|
||
can be used to control telescopes over a serial port for tracking celestial
|
||
objects.")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public stuff
|
||
(package
|
||
(name "stuff")
|
||
(version "1.26.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.astromatic.net/download/stuff/"
|
||
"stuff-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1syibi3b86z9pikhicvkkmgxm916j732fdiw0agw0lq6z13fdcjm"))))
|
||
(build-system gnu-build-system)
|
||
(home-page "https://www.astromatic.net/software/stuff")
|
||
(synopsis "Astronomical catalogue simulation")
|
||
(description
|
||
"Stuff is a program that simulates \"perfect\" astronomical catalogues.
|
||
It generates object lists in ASCII which can read by the SkyMaker program to
|
||
produce realistic astronomical fields. Stuff is part of the EFIGI development
|
||
project.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public swarp
|
||
(package
|
||
(name "swarp")
|
||
(version "2.38.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.astromatic.net/download/swarp/"
|
||
"swarp-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1i670waqp54vin1cn08mqckcggm9zqd69nk7yya2vvqpdizn6jpm"))))
|
||
(build-system gnu-build-system)
|
||
(home-page "https://www.astromatic.net/software/swarp")
|
||
(synopsis "FITS image resampling and co-addition")
|
||
(description
|
||
"SWarp is a program that resamples and co-adds together FITS images using
|
||
any arbitrary astrometric projection defined in the WCS standard.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public celestia
|
||
(let ((commit "9dbdf29c4ac3d20afb2d9a80d3dff241ecf81dce"))
|
||
(package
|
||
(name "celestia")
|
||
(version (git-version "1.6.1" "815" commit))
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/celestiaproject/celestia")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"00xibg87l1arzifakgj7s828x9pszcgx7x7ij88a561ig49ryh78"))))
|
||
(build-system cmake-build-system)
|
||
(native-inputs
|
||
`(("perl" ,perl)
|
||
("libgit2" ,libgit2)
|
||
("pkg-config" ,pkg-config)
|
||
("libtool" ,libtool)
|
||
("gettext" ,gettext-minimal)))
|
||
(inputs
|
||
`(("glu" ,glu)
|
||
("glew" ,glew)
|
||
("libtheora" ,libtheora)
|
||
("libjpeg" ,libjpeg-turbo)
|
||
("libpng" ,libpng)
|
||
;; maybe required?
|
||
("mesa" ,mesa)
|
||
;; optional: fmtlib, Eigen3;
|
||
("fmt" ,fmt-7)
|
||
("eigen" ,eigen)
|
||
;; glut: for glut interface
|
||
("freeglut" ,freeglut)))
|
||
(propagated-inputs
|
||
(list lua))
|
||
(arguments
|
||
`(#:configure-flags '("-DENABLE_GLUT=ON" "-DENABLE_QT=OFF")
|
||
#:tests? #f)) ;no tests
|
||
(home-page "https://celestia.space/")
|
||
(synopsis "Real-time 3D visualization of space")
|
||
(description
|
||
"This simulation program lets you explore our universe in three
|
||
dimensions. Celestia simulates many different types of celestial objects.
|
||
From planets and moons to star clusters and galaxies, you can visit every
|
||
object in the expandable database and view it from any point in space and
|
||
time. The position and movement of solar system objects is calculated
|
||
accurately in real time at any rate desired.")
|
||
(license license:gpl2+))))
|
||
|
||
(define-public celestia-gtk
|
||
(package
|
||
(inherit celestia)
|
||
(name "celestia-gtk")
|
||
(inputs
|
||
(append (alist-delete "freeglut" (package-inputs celestia))
|
||
`(("gtk2" ,gtk+-2)
|
||
("gtkglext" ,gtkglext))))
|
||
(arguments
|
||
`(#:configure-flags '("-DENABLE_GTK=ON" "-DENABLE_QT=OFF")
|
||
#:tests? #f))))
|
||
|
||
(define-public python-astropy
|
||
(package
|
||
(name "python-astropy")
|
||
(version "5.2.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "astropy" version))
|
||
(sha256
|
||
(base32 "08xc6brs7xwiqchhsjq8l10p6qc5p68cfxps7s889spqfyh2gbpn"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
'(begin
|
||
;; Remove Python bundles.
|
||
(with-directory-excursion "astropy/extern"
|
||
(for-each delete-file-recursively '("ply" "configobj")))
|
||
;; Remove cextern bundles. Check bundled versions against available
|
||
;; in Guix in the future update of astropy.
|
||
(with-directory-excursion "cextern"
|
||
(for-each delete-file-recursively '("cfitsio" "expat" "wcslib")))
|
||
#t))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'preparations
|
||
(lambda _
|
||
;; Use our own libraries in place of bundles.
|
||
(setenv "ASTROPY_USE_SYSTEM_ALL" "1")
|
||
;; Some tests require a writable home.
|
||
(setenv "HOME" "/tmp")
|
||
;; Relax xfail tests.
|
||
(substitute* "setup.cfg"
|
||
(("xfail_strict = true") "xfail_strict = false"))
|
||
;; Replace all references to external ply.
|
||
(let ((ply-files '("coordinates/angle_formats.py"
|
||
"utils/parsing.py")))
|
||
(with-directory-excursion "astropy"
|
||
(map (lambda (file)
|
||
(substitute* file (("astropy.extern.ply")
|
||
"ply")))
|
||
ply-files)))
|
||
;; Replace reference to external configobj.
|
||
(with-directory-excursion "astropy/config"
|
||
(substitute* "configuration.py"
|
||
(("from astropy.extern.configobj ") "")))))
|
||
;; This file is opened in both install and check phases.
|
||
(add-before 'install 'writable-compiler
|
||
(lambda _ (make-file-writable "astropy/_compiler.c")))
|
||
(add-before 'check 'writable-compiler
|
||
(lambda _ (make-file-writable "astropy/_compiler.c")))
|
||
(replace 'check
|
||
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
;; Extensions have to be rebuilt before running the tests.
|
||
(invoke "python" "setup.py" "build_ext" "--inplace")
|
||
(invoke "python" "-m" "pytest" "--pyargs" "astropy"
|
||
;; Skip tests that need remote data.
|
||
"-m" "not remote_data")))))))
|
||
(native-inputs
|
||
(list pkg-config
|
||
python-coverage
|
||
python-cython
|
||
python-extension-helpers
|
||
python-ipython
|
||
python-jplephem
|
||
python-objgraph
|
||
python-pytest-7.1
|
||
python-pytest-astropy
|
||
python-pytest-xdist
|
||
python-setuptools-scm
|
||
python-sgp4
|
||
python-skyfield))
|
||
(inputs
|
||
(list cfitsio expat wcslib))
|
||
(propagated-inputs
|
||
(list python-configobj
|
||
python-numpy
|
||
python-packaging
|
||
python-ply
|
||
python-pyerfa
|
||
python-pyyaml))
|
||
(home-page "https://www.astropy.org/")
|
||
(synopsis "Core package for Astronomy in Python")
|
||
(description
|
||
"Astropy is a single core package for Astronomy in Python. It contains
|
||
much of the core functionality and some common tools needed for performing
|
||
astronomy and astrophysics.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-astropy-healpix
|
||
(package
|
||
(name "python-astropy-healpix")
|
||
(version "0.7")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "astropy_healpix" version))
|
||
(sha256
|
||
(base32 "1n1svmd41iv944zf4anbnsigd47zr4dfjf49vrc7m6928gmq9hw8"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
;; This file is opened in both install and check phases.
|
||
(add-before 'install 'writable-compiler
|
||
(lambda _ (make-file-writable "astropy_healpix/_compiler.c")))
|
||
(add-before 'check 'writable-compiler
|
||
(lambda _ (make-file-writable "astropy_healpix/_compiler.c")))
|
||
(replace 'check
|
||
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
;; Extensions have to be rebuilt before running the tests.
|
||
(invoke "python" "setup.py" "build_ext" "--inplace")
|
||
(invoke "python" "-m" "pytest"
|
||
"--pyargs" "astropy_healpix")))))))
|
||
(native-inputs
|
||
(list python-extension-helpers
|
||
python-hypothesis
|
||
python-pytest-astropy
|
||
python-setuptools-scm))
|
||
(propagated-inputs
|
||
(list python-astropy python-numpy))
|
||
(home-page "https://github.com/astropy/astropy-healpix")
|
||
(synopsis "HEALPix for Astropy")
|
||
(description "This package provides HEALPix to the Astropy project.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-astroquery
|
||
(package
|
||
(name "python-astroquery")
|
||
(version "0.4.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "astroquery" version))
|
||
(sha256
|
||
(base32 "1vhkzsqlgn3ji5by2rdf2gwklhbyzvpzb1iglalhqjkkrdaaaz1h"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'check 'writable-home
|
||
(lambda _ ; some tests need a writable home
|
||
(setenv "HOME" (getcwd))))
|
||
(replace 'check
|
||
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
(invoke "python" "-m" "pytest" "--pyargs" "astroquery"
|
||
;; Skip tests that require online data.
|
||
"-m" "not remote_data")))))))
|
||
(propagated-inputs
|
||
(list python-astropy
|
||
python-beautifulsoup4
|
||
python-html5lib
|
||
python-keyring
|
||
python-numpy
|
||
python-pyvo
|
||
python-requests))
|
||
(native-inputs
|
||
(list python-flask
|
||
python-jinja2
|
||
python-matplotlib
|
||
python-pytest-astropy
|
||
python-pytest-dependency))
|
||
(home-page "https://www.astropy.org/astroquery/")
|
||
(synopsis "Access online astronomical data resources")
|
||
(description "Astroquery is a package that contains a collection of tools
|
||
to access online Astronomical data. Each web service has its own sub-package.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-cdflib
|
||
(package
|
||
(name "python-cdflib")
|
||
(version "0.4.9")
|
||
(source
|
||
(origin
|
||
(method git-fetch) ; no tests in pypi archive
|
||
(uri (git-reference
|
||
(url "https://github.com/MAVENSDC/cdflib")
|
||
(commit version)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1k557najk7ln293zwyghnhw48ays3nqf9s94kibsc7r70c2q7p08"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
(list #:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-before 'check 'set-home-env
|
||
(lambda _
|
||
(setenv "HOME" (getcwd)))))))
|
||
(propagated-inputs
|
||
(list python-attrs python-numpy))
|
||
(native-inputs
|
||
(list python-astropy
|
||
python-hypothesis
|
||
python-pytest
|
||
python-pytest-cov
|
||
python-pytest-remotedata
|
||
python-xarray))
|
||
(home-page "https://github.com/MAVENSDC/cdflib")
|
||
(synopsis "Python library to deal with NASA's CDF astronmical data format")
|
||
(description "This package provides a Python @acronym{CDF, Computable
|
||
Document Format} reader toolkit.
|
||
It provides the following functionality:
|
||
@itemize
|
||
@item Ability to read variables and attributes from CDF files
|
||
@item Writes CDF version 3 files
|
||
@item Can convert between CDF time types (EPOCH/EPOCH16/TT2000) to other common
|
||
time formats
|
||
@item Can convert CDF files into XArray Dataset objects and vice versa,
|
||
attempting to maintain ISTP compliance
|
||
@end itemize")
|
||
(license license:expat)))
|
||
|
||
(define-public python-drms
|
||
(package
|
||
(name "python-drms")
|
||
(version "0.6.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "drms" version))
|
||
(sha256
|
||
(base32 "1b0w350y4wbgyy19zcf28xbb85mqq6gnhb6ppibbc4hbn2ixbcvj"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
(list
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key inputs outputs tests?
|
||
#:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
(setenv "JSOC_EMAIL" "jsoc@sunpy.org")
|
||
(invoke "python" "-m" "pytest" "-vv")))))))
|
||
(native-inputs
|
||
(list python-astropy
|
||
python-pytest-astropy
|
||
python-pytest
|
||
python-setuptools-scm))
|
||
(propagated-inputs (list python-numpy python-pandas))
|
||
(home-page "https://sunpy.org")
|
||
(synopsis "Access astronomical HMI, AIA and MDI data with Python")
|
||
(description
|
||
"DRMS module provides an easy-to-use interface for accessing HMI, AIA and
|
||
MDI data with Python. It uses the publicly accessible
|
||
JSOC (@url{http://jsoc.stanford.edu/}) DRMS server by default, but can also be
|
||
used with local NetDRMS sites.")
|
||
(license license:bsd-2)))
|
||
|
||
(define-public python-ephem
|
||
(package
|
||
(name "python-ephem")
|
||
(version "4.1.3")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "ephem" version))
|
||
(sha256
|
||
(base32
|
||
"0smmm3l8csnw9rrimh8mpyjrm80jaafjl184spnji98vk22qd8bz"))))
|
||
(build-system python-build-system)
|
||
(native-inputs (list tzdata))
|
||
(home-page "https://rhodesmill.org/pyephem/")
|
||
(synopsis "Compute positions of the planets and stars")
|
||
(description
|
||
"PyEphem provides an @code{ephem} Python package for performing
|
||
high-precision astronomy computations.
|
||
|
||
The name ephem is short for the word ephemeris, which is the traditional term
|
||
for a table giving the position of a planet, asteroid, or comet for a series
|
||
of dates.")
|
||
(license license:expat)))
|
||
|
||
(define-public python-hvpy
|
||
(package
|
||
(name "python-hvpy")
|
||
(version "1.0.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "hvpy" version))
|
||
(sha256
|
||
(base32 "0r0asyflz2sw9zn5vgs138nh81m0rbwbakmrncbc1ghdr3g6jahv"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
(list #:tests? #f)) ; Requires HTTP(S) access to api.beta.helioviewer.org
|
||
(propagated-inputs (list python-pydantic python-requests))
|
||
(native-inputs (list python-pytest python-pytest-astropy))
|
||
(home-page "https://helioviewer.org/")
|
||
(synopsis "Helioviewer Python API Wrapper")
|
||
(description "@code{hvpy} is a Python API wrapper around the formal
|
||
@url{Helioviewer API, https://api.helioviewer.org/docs/v2/}.")
|
||
(license license:bsd-2)))
|
||
|
||
(define-public python-mpl-animators
|
||
(package
|
||
(name "python-mpl-animators")
|
||
(version "1.1.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "mpl_animators" version))
|
||
(sha256
|
||
(base32 "12kjmj7rn3pk9ly82h5s5hn0kl3kxkr7bgkz9zr9k59pir8z1r8b"))))
|
||
(build-system pyproject-build-system)
|
||
(native-inputs
|
||
(list python-pytest
|
||
python-pytest-mpl
|
||
python-setuptools-scm))
|
||
(propagated-inputs
|
||
(list python-astropy
|
||
python-matplotlib
|
||
python-numpy))
|
||
(home-page "https://sunpy.org")
|
||
(synopsis "Interactive animations with matplotlib")
|
||
(description
|
||
"The @code{mpl_animators} package provides a set of classes which allow
|
||
the easy construction of interactive matplotlib widget based animations.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-photutils
|
||
(package
|
||
(name "python-photutils")
|
||
(version "1.6.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "photutils" version))
|
||
(sha256
|
||
(base32 "0w4kxl6aqjp2wv396krw30kwg6cmmska8gvgpihm2i2zxyzz39vd"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:test-target "pytest"
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
;; This file is opened in both install and check phases.
|
||
(add-before 'install 'writable-compiler
|
||
(lambda _ (make-file-writable "photutils/_compiler.c")))
|
||
(add-before 'check 'writable-compiler
|
||
(lambda _ (make-file-writable "photutils/_compiler.c"))))))
|
||
(propagated-inputs
|
||
(list python-astropy python-numpy))
|
||
(native-inputs
|
||
(list python-cython
|
||
python-extension-helpers
|
||
python-pytest-astropy
|
||
python-pytest-runner
|
||
python-setuptools-scm))
|
||
(home-page "https://github.com/astropy/photutils")
|
||
(synopsis "Source detection and photometry")
|
||
(description "Photutils is an Astropy package for detection and photometry
|
||
of astronomical sources.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-poppy
|
||
(package
|
||
(name "python-poppy")
|
||
(version "1.0.3")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "poppy" version))
|
||
(sha256
|
||
(base32
|
||
"050cn6aabd1dxbi7zihbqnkl79hz6q6d5n6g25zmrpvc4sii171m"))))
|
||
(build-system pyproject-build-system)
|
||
(propagated-inputs
|
||
;; XXX: With python-synphot (marked as optional) package added to the list
|
||
;; it tries to download from remote host during tests and fails. Overall
|
||
;; tests take up to 5-8min to pass.
|
||
(list python-astropy
|
||
python-matplotlib
|
||
python-numpy
|
||
python-scipy))
|
||
(native-inputs
|
||
(list python-docutils
|
||
python-h5py
|
||
python-pandas
|
||
python-pytest
|
||
python-pytest-astropy
|
||
python-sphinx
|
||
python-setuptools-scm))
|
||
(home-page "https://poppy-optics.readthedocs.io/")
|
||
(synopsis "Physical Optics Propagation in Python")
|
||
(description
|
||
"@acronym{POPPY, Physical Optics Propagation in Python} is a Python package that
|
||
simulates physical optical propagation including diffraction. It implements a
|
||
flexible framework for modeling Fraunhofer and Fresnel diffraction and point
|
||
spread function formation, particularly in the context of astronomical
|
||
telescopes.
|
||
|
||
POPPY was developed as part of a simulation package for the James Webb Space
|
||
Telescope, but is more broadly applicable to many kinds of imaging simulations.
|
||
It is not, however, a substitute for high fidelity optical design software such
|
||
as Zemax or Code V, but rather is intended as a lightweight alternative for
|
||
cases for which diffractive rather than geometric optics is the topic of
|
||
interest, and which require portability between platforms or ease of scripting.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-pyvo
|
||
(package
|
||
(name "python-pyvo")
|
||
(version "1.2.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "pyvo" version))
|
||
(sha256
|
||
(base32 "1ri5yp6903386lkn79mdcmlax7zsfrrrjbcvb91wxydcc9yasc1n"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
'(#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key tests? #:allow-other-keys)
|
||
(when tests?
|
||
(invoke "python" "-m" "pytest" "--pyargs" "pyvo" "-k"
|
||
(string-append ; these tests use the network
|
||
"not test_access_with_string"
|
||
" and not test_access_with_list"
|
||
" and not test_access_with_expansion"))))))))
|
||
(native-inputs
|
||
(list python-pytest-astropy python-requests-mock))
|
||
(propagated-inputs
|
||
(list python-astropy python-mimeparse python-pillow python-requests))
|
||
(home-page "https://github.com/astropy/pyvo")
|
||
(synopsis "Access Virtual Observatory data and services")
|
||
(description
|
||
"PyVO is a package providing access to remote data and services of the
|
||
Virtual observatory (VO) using Python.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-regions
|
||
(package
|
||
(name "python-regions")
|
||
(version "0.7")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "regions" version))
|
||
(sha256
|
||
(base32 "08wsg9kxnki5pz8gdp81bq06jdmsip382fl02rvnr96cvzr7wf3m"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:test-target "pytest"
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
;; This doctest requires online data.
|
||
(add-after 'unpack 'delete-doctest
|
||
(lambda _ (delete-file "docs/masks.rst")))
|
||
;; This file is opened in both install and check phases.
|
||
(add-before 'install 'writable-compiler
|
||
(lambda _ (make-file-writable "regions/_compiler.c")))
|
||
(add-before 'check 'writable-compiler
|
||
(lambda _ (make-file-writable "regions/_compiler.c")))
|
||
(add-before 'check 'writable-home
|
||
(lambda _ (setenv "HOME" (getcwd)))))))
|
||
(propagated-inputs
|
||
(list python-astropy python-numpy))
|
||
(native-inputs
|
||
(list python-cython
|
||
python-extension-helpers
|
||
python-pytest-arraydiff
|
||
python-pytest-astropy
|
||
python-pytest-runner
|
||
python-setuptools-scm))
|
||
(home-page "https://github.com/astropy/regions")
|
||
(synopsis "Package for region handling")
|
||
(description "Regions is an Astropy package for region handling.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-reproject
|
||
(package
|
||
(name "python-reproject")
|
||
(version "0.9.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "reproject" version))
|
||
(sha256
|
||
(base32 "1msysqbhkfi3bmw29wipk250a008bnng7din56md9ipbwiar8x55"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
(list
|
||
;; FIXME: Failing tests
|
||
;;
|
||
;; reproject/adaptive/core.py:7: in <module>
|
||
;; from .deforest import map_coordinates
|
||
;; E ModuleNotFoundError: No module named 'reproject.adaptive.deforest'
|
||
;;
|
||
#:tests? #f
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-before 'install 'writable-compiler
|
||
(lambda _
|
||
(make-file-writable "reproject/_compiler.c")))
|
||
(add-before 'check 'writable-compiler
|
||
(lambda _
|
||
(make-file-writable "reproject/_compiler.c")))
|
||
(add-before 'check 'writable-home
|
||
(lambda _
|
||
(setenv "HOME" (getcwd)))))))
|
||
(propagated-inputs
|
||
(list python-astropy
|
||
python-astropy-healpix
|
||
python-numpy
|
||
python-scipy))
|
||
(native-inputs
|
||
(list python-asdf
|
||
python-cython
|
||
python-extension-helpers
|
||
python-gwcs
|
||
python-pytest-astropy
|
||
python-pyvo
|
||
python-semantic-version
|
||
python-pytest
|
||
python-setuptools-scm
|
||
python-shapely))
|
||
(home-page "https://reproject.readthedocs.io")
|
||
(synopsis "Astronomical image reprojection in Python")
|
||
(description
|
||
"This package provides a functionality to reproject astronomical images using
|
||
various techniques via a uniform interface, where reprojection is the
|
||
re-gridding of images from one world coordinate system to another e.g.
|
||
changing the pixel resolution, orientation, coordinate system.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-sgp4
|
||
(package
|
||
(name "python-sgp4")
|
||
(version "2.21")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "sgp4" version))
|
||
(sha256
|
||
(base32 "1vzcrlrlzmhbycdz16m8v241l8zx49vsy81wcd0yjxs80isvhyb1"))))
|
||
(build-system python-build-system)
|
||
(propagated-inputs
|
||
(list python-numpy))
|
||
(home-page "https://github.com/brandon-rhodes/python-sgp4")
|
||
(synopsis "Track earth satellite TLE orbits using SGP4")
|
||
(description
|
||
"This package provides a Python implementation for computations of the
|
||
position and velocity of an earth-orbiting satellite, given the satellite’s
|
||
@acronym{TLE, Two-line element set} orbital elements from a source like
|
||
@url{CelesTrak, https://celestrak.org/}.
|
||
|
||
It implements the most recent version of @acronym{SGP4, Simplified General
|
||
Perturbation models}, and is regularly run against the SGP4 test suite to make
|
||
sure that its satellite position predictions agree to within 0.1 mm with the
|
||
predictions of the standard distribution of the algorithm. This error is far
|
||
less than the 1–3 km/day by which satellites themselves deviate from the ideal
|
||
orbits described in TLE files.")
|
||
(license license:expat)))
|
||
|
||
(define-public python-sunpy
|
||
(package
|
||
(name "python-sunpy")
|
||
(version "4.1.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "sunpy" version))
|
||
(sha256
|
||
(base32 "1h8dnsic96bxm5l278vk6jj5h4bh1b143fghsvv5rhigk137vysp"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
(list
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-before 'install 'writable-compiler
|
||
(lambda _
|
||
(make-file-writable "sunpy/_compiler.c")))
|
||
(add-before 'check 'prepare-test-environment
|
||
(lambda _
|
||
(setenv "HOME" "/tmp")
|
||
(make-file-writable "sunpy/_compiler.c")
|
||
;; TODO: (Sharlatan-20221106T115800+0000): Review failing tests
|
||
(substitute* "sunpy/image/tests/test_transform.py"
|
||
(("def test_clipping") "def __off_test_clipping")
|
||
(("def test_nans") "def __off_test_nans")
|
||
(("def test_endian") "def __off_test_endian"))
|
||
(substitute* "sunpy/map/tests/test_mapbase.py"
|
||
(("def test_derotating_nonpurerotation_pcij")
|
||
"def __off_test_derotating_nonpurerotation_pcij"))
|
||
(substitute* "sunpy/map/sources/tests/test_mdi_source.py"
|
||
(("def test_synoptic_source")
|
||
"def __off_test_synoptic_source"))
|
||
(substitute* "sunpy/tests/tests/test_self_test.py"
|
||
(("def test_main_nonexisting_module")
|
||
"def __off_test_main_nonexisting_module")
|
||
(("def test_main_stdlib_module")
|
||
"def __off_test_main_stdlib_module")))))))
|
||
(native-inputs
|
||
(list python-aiohttp
|
||
python-extension-helpers
|
||
python-hvpy
|
||
python-packaging
|
||
python-pytest
|
||
python-pytest-astropy
|
||
python-pytest-doctestplus
|
||
python-pytest-mock
|
||
python-pytest-mpl
|
||
python-pytest-xdist
|
||
python-setuptools-scm))
|
||
(propagated-inputs
|
||
(list parfive
|
||
python-asdf
|
||
python-asdf-astropy
|
||
python-astropy
|
||
python-beautifulsoup4
|
||
python-cdflib
|
||
python-dask
|
||
python-dateutil
|
||
python-drms
|
||
python-glymur
|
||
python-h5netcdf
|
||
python-h5py
|
||
python-hypothesis
|
||
python-jplephem
|
||
python-matplotlib
|
||
python-mpl-animators
|
||
python-numpy
|
||
;; python-opencv-python ; not packed yet
|
||
python-pandas
|
||
python-reproject
|
||
python-scikit-image
|
||
python-scipy
|
||
python-semantic-version
|
||
python-sqlalchemy
|
||
python-tqdm
|
||
python-zeep))
|
||
(home-page "https://sunpy.org")
|
||
(synopsis "Python library for Solar Physics")
|
||
(description
|
||
"SunPy is package for solar physics and is meant to be a free alternative to the
|
||
SolarSoft data analysis environment.")
|
||
(license license:bsd-2)))
|
||
|
||
(define-public python-astral
|
||
(package
|
||
(name "python-astral")
|
||
(version "2.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "astral" version))
|
||
(sha256
|
||
(base32 "1gkggdibccmdy9glymw3kbrkzm6svvsg0lk56hhy92y4smkrj7g4"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
(invoke "python" "-m" "pytest")))))))
|
||
(native-inputs
|
||
(list python-freezegun python-setuptools-scm))
|
||
(propagated-inputs
|
||
(list python-dataclasses python-pytest python-pytz))
|
||
(home-page "https://github.com/sffjunkie/astral")
|
||
(synopsis "Calculations for the position of the sun and moon")
|
||
(description "Astral is a Python module that calculates times for various
|
||
positions of the sun: dawn, sunrise, solar noon, sunset, dusk, solar
|
||
elevation, solar azimuth, rahukaalam, and the phases of the moon.")
|
||
(license license:asl2.0)))
|
||
|
||
(define-public python-spherical-geometry
|
||
(package
|
||
(name "python-spherical-geometry")
|
||
(version "1.2.22")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/spacetelescope/spherical_geometry")
|
||
(commit version)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0kzcncqir4v7nhk9lxj9gxr32p3krkaqa58y2i4kksgxxy24qw4z"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
(list
|
||
;; NOTE: (Sharlatan-20220523T231348+0100): Tests depends on old Python2
|
||
;; libarry `sphere'
|
||
#:tests? #f
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-after 'unpack 'preparations
|
||
(lambda _
|
||
;; Fixing: setuptools-scm was unable to detect version for ...
|
||
(substitute* "setup.py"
|
||
(("use_scm_version=True")
|
||
(format #f "version=~s" #$version))
|
||
(("setup_requires=\\['setuptools_scm'\\],.*")
|
||
""))
|
||
;; Use our own libraries in place of bundles.
|
||
(setenv "USE_SYSTEM_QD" "1"))))))
|
||
(native-inputs
|
||
(list python-pytest
|
||
python-setuptools-scm))
|
||
(inputs
|
||
(list qd))
|
||
(propagated-inputs
|
||
(list python-astropy
|
||
python-numpy))
|
||
(home-page "https://github.com/spacetelescope/tweakwcs")
|
||
(synopsis "Python astronimical package for handling spherical polygons")
|
||
(description
|
||
"The @code{spherical_geometry} library is a Python package for handling
|
||
spherical polygons that represent arbitrary regions of the sky.")
|
||
;; LICENSE.rst Association of Universities for Research in Astronomy (AURA)
|
||
;; QD_LIBRARY_LICENSE.rst for bandeled QD source
|
||
(license license:bsd-3)))
|
||
|
||
(define-public libnova
|
||
(package
|
||
(name "libnova")
|
||
(version "0.16")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://git.code.sf.net/p/libnova/libnova.git")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"0icwylwkixihzni0kgl0j8dx3qhqvym6zv2hkw2dy6v9zvysrb1b"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'patch-git-version
|
||
(lambda _
|
||
(substitute* "./git-version-gen"
|
||
(("/bin/sh") (which "sh")))
|
||
#t)))))
|
||
(native-inputs
|
||
(list autoconf automake libtool))
|
||
(synopsis "Celestial mechanics, astrometry and astrodynamics library")
|
||
(description "Libnova is a general purpose, double precision, Celestial
|
||
Mechanics, Astrometry and Astrodynamics library.")
|
||
(home-page "https://libnova.sourceforge.net/")
|
||
(license (list license:lgpl2.0+
|
||
license:gpl2+)))) ; examples/transforms.c & lntest/*.c
|
||
|
||
(define-public libsep
|
||
(package
|
||
(name "libsep")
|
||
(version "1.2.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/kbarbary/sep")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0sag96am6r1ffh9860yq40js874362v3132ahlm6sq7padczkicf"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
(list
|
||
#:make-flags #~(list (string-append "CC=" #$(cc-for-target))
|
||
(string-append "PREFIX=" #$output))
|
||
#:phases #~(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key tests? #:allow-other-keys)
|
||
(when tests?
|
||
(chdir "../source")
|
||
(invoke "make"
|
||
(string-append "CC=" #$(cc-for-target))
|
||
"test")))))))
|
||
(native-inputs
|
||
(list python-wrapper))
|
||
(home-page "https://github.com/kbarbary/sep")
|
||
(synopsis "Astronomical source extraction and photometry library")
|
||
(description
|
||
"SEP makes the core algorithms of
|
||
@url{https://www.astromatic.net/software/sextractor/, sextractor} available as a
|
||
library of stand-alone functions and classes. These operate directly on
|
||
in-memory arrays (no FITS files or configuration files). The code is derived
|
||
from the Source Extractor code base (written in C) and aims to produce results
|
||
compatible with Source Extractor whenever possible. SEP consists of a C library
|
||
with no dependencies outside the standard library, and a Python module that
|
||
wraps the C library in a Pythonic API. The Python wrapper operates on NumPy
|
||
arrays with NumPy as its only dependency.")
|
||
(license (list license:expat license:lgpl3+ license:bsd-3))))
|
||
|
||
(define-public libskry
|
||
(package
|
||
(name "libskry")
|
||
(version "0.3.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/GreatAttractor/libskry")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "14kwng0j8wqzlb0gqg3ayq36l15dpz7kvxc56fa47j55b376bwh6"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
`(#:make-flags
|
||
(list
|
||
(string-append
|
||
"LIBAV_INCLUDE_PATH=" (assoc-ref %build-inputs "ffmpeg") "/include"))
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(delete 'configure) ;; no configure provided
|
||
(delete 'check) ;; no tests provided
|
||
(replace 'install
|
||
;; The Makefile lacks an ‘install’ target.
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((out (assoc-ref outputs "out"))
|
||
(lib (string-append out "/lib"))
|
||
(include (string-append out "/include")))
|
||
(copy-recursively "bin" lib)
|
||
(copy-recursively "include" include))
|
||
#t)))))
|
||
(inputs
|
||
(list ffmpeg-4))
|
||
(home-page "https://github.com/GreatAttractor/libskry")
|
||
(synopsis "Astronimical lucky imaging library")
|
||
(description
|
||
"@code{libskry} implements the lucky imaging principle of astronomical
|
||
imaging: creating a high-quality still image out of a series of many thousands)
|
||
low quality ones")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public libpasastro
|
||
;; NOTE: (Sharlatan-20210122T215921+0000): the version tag has a build
|
||
;; error on spice which is resolved with the latest commit.
|
||
(let ((commit "e3c218d1502a18cae858c83a9a8812ab197fcb60")
|
||
(revision "1"))
|
||
(package
|
||
(name "libpasastro")
|
||
(version (git-version "1.4.0" revision commit))
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/pchev/libpasastro")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"0asp2sn34nds5va2ghppwc41vb6j3d1mf049j949rgrll817kx47"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
`(#:tests? #f
|
||
#:make-flags
|
||
(list
|
||
,(match (or (%current-target-system) (%current-system))
|
||
((or "aarch64-linux" "armhf-linux" "i686-linux" "x86_64-linux")
|
||
"OS_TARGET=linux")
|
||
(_ #f))
|
||
,(match (or (%current-target-system) (%current-system))
|
||
("i686-linux" "CPU_TARGET=i386")
|
||
("x86_64-linux" "CPU_TARGET=x86_64")
|
||
((or "armhf-linux" "aarch64-linux") "CPU_TARGET=armv7l")
|
||
(_ #f))
|
||
(string-append "PREFIX=" (assoc-ref %outputs "out")))
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(delete 'configure))))
|
||
(home-page "https://github.com/pchev/libpasastro")
|
||
(synopsis "Interface to astronomy library for use from Pascal program")
|
||
(description
|
||
"This package provides shared libraries to interface Pascal program with
|
||
standard astronomy libraries:
|
||
|
||
@itemize
|
||
@item @code{libpasgetdss.so}: Interface with GetDSS to work with DSS images.
|
||
@item @code{libpasplan404.so}: Interface with Plan404 to compute planets position.
|
||
@item @code{libpaswcs.so}: Interface with libwcs to work with FITS WCS.
|
||
@item @code{libpasspice.so}: To work with NAIF/SPICE kernel.
|
||
@end itemize\n")
|
||
(license license:gpl2+))))
|
||
|
||
(define-public missfits
|
||
(package
|
||
(name "missfits")
|
||
(version "2.8.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.astromatic.net/download/missfits/"
|
||
"missfits-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "04jrd7fsvzr14vdmwgj2f6v97gdcfyjyz6jppml3ghr9xh12jxv5"))))
|
||
(build-system gnu-build-system)
|
||
(home-page "https://www.astromatic.net/software/missfits")
|
||
(synopsis "FITS files Maintenance program")
|
||
(description
|
||
"MissFITS is a program that performs basic maintenance and packaging tasks
|
||
on FITS files:
|
||
|
||
@itemize
|
||
@item add/edit FITS header keywords
|
||
@item split/join Multi-Extension-FITS (MEF) files
|
||
@item unpack/pack FITS data-cubes
|
||
@item create/check/update FITS checksums, using R. Seaman's protocol
|
||
(see http://www.adass.org/adass/proceedings/adass94/seamanr.html)
|
||
@end itemize\n")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public xplanet
|
||
(package
|
||
(name "xplanet")
|
||
(version "1.3.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append
|
||
"mirror://sourceforge/xplanet/xplanet/"
|
||
version "/xplanet-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1rzc1alph03j67lrr66499zl0wqndiipmj99nqgvh9xzm1qdb023"))
|
||
(patches
|
||
(search-patches
|
||
"xplanet-1.3.1-cxx11-eof.patch"
|
||
"xplanet-1.3.1-libdisplay_DisplayOutput.cpp.patch"
|
||
"xplanet-1.3.1-libimage_gif.c.patch"
|
||
"xplanet-1.3.1-xpUtil-Add2017LeapSecond.cpp.patch"))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
(list pkg-config))
|
||
(inputs
|
||
`(("libx11" ,libx11)
|
||
("libxscrnsaver" ,libxscrnsaver)
|
||
("libice" ,libice)
|
||
("freetype" ,freetype)
|
||
("pango" ,pango)
|
||
("giflib" ,giflib)
|
||
("libjpeg" ,libjpeg-turbo)
|
||
("libpng" ,libpng)
|
||
("libtiff" ,libtiff)
|
||
("netpbm" ,netpbm)
|
||
("zlib" ,zlib)))
|
||
(arguments
|
||
`(#:configure-flags
|
||
(let ((netpbm (assoc-ref %build-inputs "netpbm")))
|
||
(append (list
|
||
;; Give correct path for pnm.h header to configure script
|
||
(string-append "CPPFLAGS=-I" netpbm "/include/netpbm")
|
||
;; no nasa jpl cspice support
|
||
"--without-cspice" )))))
|
||
(home-page "https://xplanet.sourceforge.net/")
|
||
(synopsis "Planetary body renderer")
|
||
(description
|
||
"Xplanet renders an image of a planet into an X window or file.
|
||
All of the major planets and most satellites can be drawn and different map
|
||
projections are also supported, including azimuthal, hemisphere, Lambert,
|
||
Mercator, Mollweide, Peters, polyconic, orthographic and rectangular.")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public gpredict
|
||
(package
|
||
(name "gpredict")
|
||
(version "2.2.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/csete/gpredict/releases"
|
||
"/download/v" version
|
||
"/gpredict-" version ".tar.bz2"))
|
||
(sha256
|
||
(base32 "0hwf97kng1zy8rxyglw04x89p0bg07zq30hgghm20yxiw2xc8ng7"))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
`(("intltool" ,intltool)
|
||
("gettext" ,gettext-minimal)
|
||
("pkg-config" ,pkg-config)))
|
||
(inputs
|
||
(list curl glib goocanvas gtk+))
|
||
(arguments
|
||
`(#:configure-flags '("CFLAGS=-O2 -g -fcommon")
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'fix-tests
|
||
(lambda _
|
||
;; Remove reference to non-existent file.
|
||
(substitute* "po/POTFILES.in"
|
||
(("src/gtk-sat-tree\\.c")
|
||
""))
|
||
#t)))))
|
||
(synopsis "Satellite tracking and orbit prediction application")
|
||
(description
|
||
"Gpredict is a real-time satellite tracking and orbit prediction
|
||
application. It can track a large number of satellites and display their
|
||
position and other data in lists, tables, maps, and polar plots (radar view).
|
||
Gpredict can also predict the time of future passes for a satellite, and
|
||
provide you with detailed information about each pass.")
|
||
(home-page "http://gpredict.oz9aec.net/index.php")
|
||
(license license:gpl2+)))
|
||
|
||
(define-public sgp4
|
||
;; Version tag v1.0 is dated to <2021-01-11>, use the lates commit instead.
|
||
(let ((commit "6a448b4850e5fbf8c1ca03bb5f6013a9fdc1fd91")
|
||
(revision "2"))
|
||
(package
|
||
(name "sgp4")
|
||
(version (git-version "1.0" revision commit))
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/dnwrnr/sgp4")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "15q8sain87cbppmzq66y6gp6bvm3kdd1bcchrl59rcvjp0w51wl1"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
(list
|
||
;; FIXME: Tests evaluated via runtest binary, but it's failing even
|
||
;; when SGP4-VER.TLE file was copied next to it during install phase.
|
||
;;
|
||
;; There are 2 more binaries are created after build phase -
|
||
;; passpredict and sattrack which are failing to execute after
|
||
;; install, strace output:
|
||
;;
|
||
;; strace: exec: Exec format error
|
||
;;
|
||
#:tests? #f))
|
||
(home-page "https://github.com/dnwrnr/sgp4")
|
||
(synopsis "Simplified perturbations models library")
|
||
(description
|
||
"This is a library implementing the simplified perturbations model.
|
||
It can be used to calculate the trajectory of satellites.")
|
||
(license license:asl2.0))))
|
||
|
||
(define-public imppg
|
||
(package
|
||
(name "imppg")
|
||
(version "0.6.5")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/GreatAttractor/imppg")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0a6wb1a9adwd01dmy0r03xxp8iz9y7mvh30088ajilhj4lf90vxa"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
`(#:tests? #f ;no test provided
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'configure
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(mkdir-p "build")
|
||
(chdir "build")
|
||
(invoke
|
||
"cmake"
|
||
"-G" "Unix Makefiles"
|
||
"-DCMAKE_BUILD_TYPE=Release"
|
||
(string-append "-DCMAKE_INSTALL_PREFIX=" (assoc-ref outputs "out"))
|
||
".."))))))
|
||
(native-inputs
|
||
(list boost pkg-config))
|
||
(inputs
|
||
(list cfitsio freeimage glew wxwidgets-3.0))
|
||
(home-page "https://github.com/GreatAttractor/imppg")
|
||
(synopsis "Astronomical Image Post-Proccessor (ImPPG)")
|
||
(description
|
||
"ImPPG performs Lucy-Richardson deconvolution, unsharp masking,
|
||
brightness normalization and tone curve adjustment. It can also apply
|
||
previously specified processing settings to multiple images. All operations
|
||
are performed using 32-bit floating-point arithmetic.
|
||
|
||
Supported input formats: FITS, BMP, JPEG, PNG, TIFF (most of bit depths and
|
||
compression methods), TGA and more. Images are processed in grayscale and can
|
||
be saved as: BMP 8-bit; PNG 8-bit; TIFF 8-bit, 16-bit, 32-bit
|
||
floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit,
|
||
32-bit floating-point.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public indi
|
||
(package
|
||
(name "indi")
|
||
(version "1.9.9")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/indilib/indi")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1vfcas59nlw8v7n6qhxhcm4isf5wk0crip5rmsallq3bsv3zznfr"))))
|
||
(build-system cmake-build-system)
|
||
(arguments
|
||
;; TODO: fix failing tests on aarch64-system.
|
||
`(#:tests? ,(not (or (%current-target-system) (target-aarch64?)))
|
||
#:configure-flags
|
||
(let ((out (assoc-ref %outputs "out")))
|
||
(list
|
||
"-DINDI_BUILD_UNITTESTS=ON"
|
||
"-DCMAKE_BUILD_TYPE=Release"
|
||
(string-append "-DCMAKE_INSTALL_PREFIX=" out)
|
||
(string-append "-DUDEVRULES_INSTALL_DIR=" out "/lib/udev/rules.d")))
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key tests? #:allow-other-keys)
|
||
(when tests?
|
||
(with-directory-excursion "test"
|
||
(invoke "ctest")))))
|
||
(add-before 'install 'set-install-directories
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let ((out (assoc-ref outputs "out")))
|
||
(mkdir-p (string-append out "/lib/udev/rules.d"))))))))
|
||
(native-inputs
|
||
(list googletest))
|
||
(inputs
|
||
(list cfitsio
|
||
curl
|
||
fftw
|
||
gsl
|
||
libev
|
||
libjpeg-turbo
|
||
libnova
|
||
libtiff
|
||
libusb
|
||
zlib))
|
||
(home-page "https://www.indilib.org")
|
||
(synopsis "Library for astronimical intrumentation control")
|
||
(description
|
||
"INDI (Instrument-Neutral Device Interface) is a distributed XML-based
|
||
control protocol designed to operate astronomical instrumentation. INDI is
|
||
small, flexible, easy to parse, scalable, and stateless. It supports common
|
||
DCS functions such as remote control, data acquisition, monitoring, and a lot
|
||
more.")
|
||
(license (list license:bsd-3
|
||
license:gpl2+
|
||
license:lgpl2.0+
|
||
license:lgpl2.1+))))
|
||
|
||
(define-public sunclock
|
||
(let ((commit "f4106eb0a81f7594726d6b2859efd8fc64cc1225")
|
||
(revision "1"))
|
||
(package
|
||
(name "sunclock")
|
||
(version (git-version "3.57" revision commit))
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/nongiach/Sunclock")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1rczdpmhvfw57b9r793vq8vqlbdhlkgj52fxwrdfl6cwj95a9kv2"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
`(#:make-flags
|
||
(list (string-append "DESTDIR=" %output)
|
||
;; Fix incorrect argument given to gcc. Error message:
|
||
;; "gcc: error: DefaultGcc2AMD64Opt: No such file or directory"
|
||
"CDEBUGFLAGS=")
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'configure
|
||
(lambda _
|
||
(chdir "sunclock-3.57")
|
||
(substitute* "Imakefile"
|
||
(("^MANDIR=/X11R6/man/man1")
|
||
"MANDIR=/share/man/man1")
|
||
(("^BINDIR=/X11R6/bin")
|
||
"BINDIR=/bin")
|
||
;; Disable ZLIB support for vmf files because zlib implements
|
||
;; `gzgetc` as a macro instead of a function, which results in
|
||
;; a compilation error.
|
||
((" -DZLIB") "")
|
||
((" -lz") "")
|
||
(("cd \\$\\(DESTDIR\\)\\$\\(SHAREDIR\\)/earthmaps/vmf ; \
|
||
gzip -f \\*.vmf")
|
||
""))
|
||
;; Generate Makefile.
|
||
(invoke "xmkmf"))))
|
||
#:tests? #f)) ; No check target.
|
||
(inputs
|
||
(list libjpeg-turbo libpng libx11 libxpm))
|
||
(native-inputs
|
||
(list imake))
|
||
(home-page "https://github.com/nongiach/Sunclock")
|
||
(synopsis
|
||
"Map of the Earth that shows which portion is illuminated by the Sun")
|
||
(description
|
||
"Sunclock displays a map of the Earth and shows which portion is
|
||
illuminated by the Sun. It can commute between two states, the \"clock window\"
|
||
and the \"map window\". The clock window displays a small map of the Earth and
|
||
therefore occupies little space on the screen, while the \"map window\" displays
|
||
a large map and offers more advanced functions: local time of cities, Sun and
|
||
Moon position, etc.")
|
||
(license license:gpl2+))))
|
||
|
||
(define-public python-jplephem
|
||
(package
|
||
(name "python-jplephem")
|
||
(version "2.17")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "jplephem" version))
|
||
(sha256
|
||
(base32 "09xaibxnwbzzs3x9g3ibqa2la17z3r6in93321glh02dbibfbip1"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
|
||
(when tests?
|
||
(let ((out (assoc-ref outputs "out")))
|
||
(add-installed-pythonpath inputs outputs)
|
||
(setenv "PATH" (string-append out "/bin:" (getenv "PATH")))
|
||
(invoke "python" "-m" "unittest" "discover" "-s" "test"))))))))
|
||
(inputs
|
||
(list python-numpy))
|
||
(home-page "https://github.com/brandon-rhodes/python-jplephem")
|
||
(synopsis "Python version of NASA DE4xx ephemerides")
|
||
(description
|
||
"The package is a Python implementation of the mathematics that standard
|
||
JPL ephemerides use to predict raw (x,y,z) planetary positions.")
|
||
(license license:expat)))
|
||
|
||
(define-public python-pyerfa
|
||
(package
|
||
(name "python-pyerfa")
|
||
(version "2.0.0.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "pyerfa" version))
|
||
(sha256
|
||
(base32 "0c6y1rm51kj8ahbr1vwbswck3ix77dc3zhc2fkg6w7iczrzn7m1g"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
'(begin
|
||
;; Remove bundled submodule library.
|
||
(delete-file-recursively "liberfa")
|
||
#t))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'build 'use-system-liberfa
|
||
(lambda _
|
||
(setenv "PYERFA_USE_SYSTEM_LIBERFA" "1"))))))
|
||
(native-inputs
|
||
(list python-pytest-doctestplus python-pytest python-setuptools-scm))
|
||
(inputs
|
||
(list erfa))
|
||
(propagated-inputs
|
||
(list python-numpy))
|
||
(home-page "https://github.com/liberfa/pyerfa")
|
||
(synopsis "Python bindings for ERFA")
|
||
(description
|
||
"PyERFA is the Python wrapper for the ERFA library (Essential
|
||
Routines for Fundamental Astronomy), a C library containing key algorithms for
|
||
astronomy, which is based on the SOFA library published by the International
|
||
Astronomical Union (IAU). All C routines are wrapped as Numpy universal
|
||
functions, so that they can be called with scalar or array inputs.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-pynbody
|
||
(package
|
||
(name "python-pynbody")
|
||
(version "1.2.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "pynbody" version))
|
||
(sha256
|
||
(base32 "1jxwk2s4qz1znvyak2lj7ld01kl1jh87xp81ki7a8dz1gcy93fkx"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
(list #:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-after 'unpack 'disable-tests-require-testdata
|
||
(lambda _
|
||
;; Disable tests which need to download additional 1.0GiB+
|
||
;; of test data archive from
|
||
;; http://star.ucl.ac.uk/~app/testdata.tar.gz
|
||
;; https://github.com/pynbody/pynbody/blob/ \
|
||
;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \
|
||
;; .github/workflows/build-test.yaml#L41
|
||
(with-directory-excursion "tests"
|
||
(for-each delete-file
|
||
'("gravity_test.py"
|
||
"adaptahop_test.py"
|
||
"ahf_halos_test.py"
|
||
"array_test.py"
|
||
"bridge_test.py"
|
||
"family_test.py"
|
||
"partial_tipsy_test.py"
|
||
"snapshot_test.py"
|
||
"test_profile.py"
|
||
"gadget_test.py"
|
||
"gadgethdf_test.py"
|
||
"grafic_test.py"
|
||
"halotools_test.py"
|
||
"nchilada_test.py"
|
||
"ramses_new_ptcl_format_test.py"
|
||
"ramses_test.py"
|
||
"rockstar_test.py"
|
||
"sph_image_test.py"
|
||
"sph_smooth_test.py"
|
||
"subfind_test.py"
|
||
"subfindhdf_gadget4_test.py"
|
||
"tipsy_test.py")))))
|
||
(replace 'check
|
||
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
(setenv "HOME" "/tmp")
|
||
(invoke "pytest" "-vv")))))))
|
||
(native-inputs
|
||
(list python-cython
|
||
python-pandas
|
||
python-pytest))
|
||
(propagated-inputs
|
||
(list python-h5py
|
||
python-matplotlib
|
||
python-numpy
|
||
python-posix-ipc
|
||
python-scipy))
|
||
(home-page "https://pynbody.github.io/pynbody/index.html")
|
||
(synopsis "Light-weight astronomical N-body/SPH analysis for python")
|
||
(description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic
|
||
astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
|
||
N-Chilada and RAMSES AMR outputs.")
|
||
(license license:gpl3+)))
|
||
|
||
(define-public python-sep
|
||
(package
|
||
(inherit libsep)
|
||
(name "python-sep")
|
||
(build-system python-build-system)
|
||
(arguments
|
||
(strip-keyword-arguments
|
||
'(#:make-flags) (package-arguments libsep)))
|
||
(native-inputs
|
||
(modify-inputs (package-inputs libsep)
|
||
(prepend python-cython)))
|
||
(propagated-inputs
|
||
(modify-inputs (package-inputs libsep)
|
||
(prepend python-numpy)))))
|
||
|
||
(define-public python-suntime
|
||
(package
|
||
(name "python-suntime")
|
||
(version "1.2.5")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "suntime" version))
|
||
(sha256
|
||
(base32
|
||
"0ja64w293wjx76q3z18ikx4rdihwkbj6pnjpbs82ycyyzhfnbpz4"))))
|
||
(build-system python-build-system)
|
||
(propagated-inputs (list python-dateutil))
|
||
(home-page "https://github.com/SatAgro/suntime")
|
||
(synopsis "Sunset and sunrise time calculation python library")
|
||
(description
|
||
"Python library doing sunrise and sunset time calculation.
|
||
|
||
Takes a WGS84 (GPS) latitude/longitude as input as well as an UTC or local
|
||
datetime object.")
|
||
(license license:lgpl3+)))
|
||
|
||
(define-public python-asdf
|
||
(package
|
||
(name "python-asdf")
|
||
(version "2.13.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "asdf" version))
|
||
(sha256
|
||
(base32 "1zixzv4n2fryaszsfchqh2nvp0gzvarhz03fc721yw6iafdadqij"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
;; FIXME: Tests fail a lot with
|
||
;;
|
||
;; ERROR - _pytest.pathlib.ImportPathMismatchError:
|
||
;; ('asdf.conftest', '/gnu/sto...
|
||
;;
|
||
`(#:tests? #f))
|
||
(native-inputs
|
||
(list python-astropy
|
||
python-packaging
|
||
python-psutil
|
||
python-pytest
|
||
python-pytest-doctestplus
|
||
python-pytest-openfiles
|
||
python-pytest-remotedata
|
||
python-semantic-version
|
||
python-setuptools-scm))
|
||
(propagated-inputs
|
||
(list python-asdf-standard
|
||
python-asdf-transform-schemas
|
||
python-asdf-unit-schemas
|
||
python-importlib-metadata
|
||
python-importlib-resources
|
||
python-jmespath
|
||
python-jsonschema-next
|
||
python-lz4
|
||
python-numpy
|
||
python-pyyaml))
|
||
(home-page "https://github.com/asdf-format/asdf")
|
||
(synopsis "Python tools to handle ASDF files")
|
||
(description
|
||
"The Advanced Scientific Data Format (ASDF) is a next-generation
|
||
interchange format for scientific data. This package contains the Python
|
||
implementation of the ASDF Standard.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-asdf-standard
|
||
(package
|
||
(name "python-asdf-standard")
|
||
(version "1.0.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "asdf_standard" version))
|
||
(sha256
|
||
(base32
|
||
"0i7xdjwn5prg2hcnf1zhw57mszc68jjr5sv4rimpzcg7f2dgzn5g"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
(list #:phases #~(modify-phases %standard-phases
|
||
(add-before 'check 'remove-blocking-tests
|
||
(lambda _
|
||
;; Remove tests require python-asdf where
|
||
;; python-asdf require python-asdf-standard,
|
||
;; break circular dependencies.
|
||
(for-each delete-file
|
||
(list "tests/test_manifests.py"
|
||
"tests/test_integration.py")))))))
|
||
(native-inputs (list python-astropy
|
||
python-jsonschema-next
|
||
python-pypa-build
|
||
python-pytest-7.1
|
||
python-packaging
|
||
python-setuptools-scm))
|
||
(propagated-inputs (list python-importlib-resources))
|
||
(home-page "https://asdf-standard.readthedocs.io/")
|
||
(synopsis "ASDF standard schemas")
|
||
(description
|
||
"This package provides Python implementation of @acronym{ASDF, Advanced
|
||
Scientific Data Format} - a proposed next generation interchange format for
|
||
scientific data. ASDF aims to exist in the same middle ground that made FITS
|
||
so successful, by being a hybrid text and binary format: containing human
|
||
editable metadata for interchange, and raw binary data that is fast to load
|
||
and use. Unlike FITS, the metadata is highly structured and is designed
|
||
up-front for extensibility.")
|
||
(license license:bsd-3)))
|
||
|
||
(define python-asdf-transform-schemas
|
||
(package
|
||
(name "python-asdf-transform-schemas")
|
||
(version "0.3.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "asdf_transform_schemas" version))
|
||
(sha256
|
||
(base32 "1midgn575970p5cnsh9y6bz77fjr392b5nfxb3z0id6c49xzzwhc"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
;; Dependency cycle with python-asdf
|
||
(list #:tests? #f))
|
||
(native-inputs (list python-setuptools-scm))
|
||
(propagated-inputs (list python-asdf-standard python-importlib-resources))
|
||
(home-page "https://github.com/asdf-format/asdf-transform-schemas")
|
||
(synopsis "ASDF schemas for transforms")
|
||
(description
|
||
"This package provides ASDF schemas for validating transform tags. Users
|
||
should not need to install this directly; instead, install an implementation
|
||
package such as asdf-astropy.")
|
||
(license license:bsd-3)))
|
||
|
||
(define python-asdf-coordinates-schemas
|
||
(package
|
||
(name "python-asdf-coordinates-schemas")
|
||
(version "0.1.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "asdf_coordinates_schemas" version))
|
||
(sha256
|
||
(base32 "0ahwhsz5jzljnpkfd2kvspirg823lnj5ip9sfkd9cx09z1nlz8jg"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
(invoke "python" "-m" "pytest")))))))
|
||
(native-inputs
|
||
(list python-pytest
|
||
python-semantic-version
|
||
python-setuptools-scm))
|
||
(propagated-inputs
|
||
(list python-asdf))
|
||
(home-page "https://github.com/asdf-format/asdf-coordinates-schemas")
|
||
(synopsis "ASDF coordinates schemas")
|
||
(description "This package provides ASDF schemas for validating
|
||
coordinates tags. Users should not need to install this directly; instead,
|
||
install an implementation package such as asdf-astropy.")
|
||
(license license:bsd-3)))
|
||
|
||
(define python-asdf-fits-schemas
|
||
;; TODO: No release, change to tag when it's ready.
|
||
(let ((commit "572bb370d777f3a325b25c1af9d76e1b7d27dcea")
|
||
(revision "0"))
|
||
(package
|
||
(name "python-asdf-fits-schemas")
|
||
(version (git-version "0.0.1" revision commit))
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/asdf-format/asdf-fits-schemas")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"1yqnzd0gcrdfl0jqm8m8kz5fd36i8lgh7xkglmp1chsi1cc6mkz2"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
(list
|
||
;; Dependency cycle with python-asdf
|
||
#:tests? #f
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-before 'build 'set-version
|
||
(lambda _
|
||
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
|
||
(native-inputs (list python-setuptools-scm))
|
||
(propagated-inputs (list python-asdf-standard python-importlib-resources))
|
||
(home-page "https://github.com/asdf-format/asdf-fits-schemas")
|
||
(synopsis "ASDF schemas to support the FITS format")
|
||
(description
|
||
"This package provides ASDF schemas for validating FITS tags.")
|
||
(license license:bsd-3))))
|
||
|
||
(define python-asdf-time-schemas
|
||
;; TODO: No release, change to tag when it's ready.
|
||
(let ((commit "e9174083d9cfd3c6f7ded9eeb360d99ccb8d9d18")
|
||
(revision "2"))
|
||
(package
|
||
(name "python-asdf-time-schemas")
|
||
(version (git-version "0.0.1" revision commit))
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/asdf-format/asdf-time-schemas")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"1i40hcxp8sds2zq939fwczjlshfqb9r9pnzy3a44c3wqdbwhcbdb"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
(list
|
||
;; Dependency cycle with python-asdf
|
||
#:tests? #f
|
||
#:phases
|
||
#~(modify-phases %standard-phases
|
||
(add-before 'build 'set-version
|
||
(lambda _
|
||
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
|
||
(native-inputs (list python-setuptools-scm))
|
||
(propagated-inputs (list python-asdf-standard
|
||
python-asdf-unit-schemas
|
||
python-importlib-resources))
|
||
(home-page "https://github.com/asdf-format/asdf-fits-schemas")
|
||
(synopsis "Schemas for storing time in ASDF")
|
||
(description
|
||
"This package provides ASDF schemas for validating time tags.")
|
||
(license license:bsd-3))))
|
||
|
||
(define python-asdf-unit-schemas
|
||
(package
|
||
(name "python-asdf-unit-schemas")
|
||
(version "0.1.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "asdf_unit_schemas" version))
|
||
(sha256
|
||
(base32
|
||
"16grpx3a9h0v1wirp0zqrfsxm867v5c0xyr98pylzziy45kqvds2"))))
|
||
(build-system pyproject-build-system)
|
||
(arguments
|
||
;; Dependency cycle with python-asdf
|
||
(list #:tests? #f))
|
||
(native-inputs (list python-setuptools-scm))
|
||
(propagated-inputs (list python-asdf-standard python-importlib-resources))
|
||
(home-page "https://asdf-unit-schemas.readthedocs.io/")
|
||
(synopsis "ASDF serialization schemas for the units defined by @code{astropy.units}")
|
||
(description "This package provides ASDF schemas for validating unit tags.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-asdf-astropy
|
||
(package
|
||
(name "python-asdf-astropy")
|
||
(version "0.3.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "asdf_astropy" version))
|
||
(sha256
|
||
(base32 "1gp5iav0a9g9q0zb22vhzi3v9vwk5wn2nxvr3mvi3bsdcdj3h23v"))))
|
||
(build-system pyproject-build-system)
|
||
(native-inputs
|
||
(list python-coverage
|
||
python-h5py
|
||
python-matplotlib
|
||
python-pandas
|
||
python-pytest-astropy
|
||
python-scipy
|
||
python-semantic-version
|
||
python-setuptools-scm))
|
||
(propagated-inputs
|
||
(list python-asdf
|
||
python-asdf-coordinates-schemas
|
||
python-asdf-transform-schemas
|
||
python-astropy
|
||
python-numpy
|
||
python-packaging))
|
||
(home-page "https://github.com/astropy/asdf-astropy")
|
||
(synopsis "ASDF serialization support for astropy")
|
||
(description
|
||
"This package includes plugins that provide ASDF serialization support for
|
||
Astropy objects.")
|
||
(license license:bsd-3)))
|
||
|
||
(define python-asdf-wcs-schemas
|
||
(package
|
||
(name "python-asdf-wcs-schemas")
|
||
(version "0.1.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "asdf_wcs_schemas" version))
|
||
(sha256
|
||
(base32 "0khyab9mnf2lv755as8kwhk3lqqpd3f4291ny3b9yp3ik86fzhz1"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
(invoke "python" "-m" "pytest")))))))
|
||
(native-inputs
|
||
(list python-pytest
|
||
python-setuptools-scm
|
||
python-semantic-version))
|
||
(propagated-inputs
|
||
(list python-asdf))
|
||
(home-page "https://github.com/asdf-format/asdf-wcs-schemas")
|
||
(synopsis "ASDF WCS Schemas")
|
||
(description
|
||
"This package provides ASDF schemas for validating World Coordinate
|
||
System (WCS) tags. Users should not need to install this directly; instead,
|
||
install an implementation package such as gwcs.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-gwcs
|
||
(package
|
||
(name "python-gwcs")
|
||
(version "0.18.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "gwcs" version))
|
||
(sha256
|
||
(base32 "0v9qcq6zl74d6s882s6xmas144jfalvll6va8rvrxmvpx4vqjzhg"))))
|
||
(build-system pyproject-build-system)
|
||
(native-inputs
|
||
(list python-jsonschema-next
|
||
python-jmespath
|
||
python-pytest
|
||
python-pytest-doctestplus
|
||
python-pyyaml
|
||
python-semantic-version
|
||
python-setuptools-scm))
|
||
(propagated-inputs
|
||
(list python-asdf
|
||
python-asdf-astropy
|
||
python-asdf-wcs-schemas
|
||
python-astropy
|
||
python-numpy
|
||
python-scipy))
|
||
(home-page "https://gwcs.readthedocs.io/en/latest/")
|
||
(synopsis "Generalized World Coordinate System")
|
||
(description "Generalized World Coordinate System (GWCS) is an Astropy
|
||
affiliated package providing tools for managing the World Coordinate System of
|
||
astronomical data.
|
||
|
||
GWCS takes a general approach to the problem of expressing transformations
|
||
between pixel and world coordinates. It supports a data model which includes
|
||
the entire transformation pipeline from input coordinates (detector by
|
||
default) to world coordinates.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python-astroalign
|
||
(package
|
||
(name "python-astroalign")
|
||
(version "2.3.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "astroalign" version))
|
||
(sha256
|
||
(base32 "19qzv3552lgrd9qmj0rxs51wmx485hw04cbf76ds5pin85kfaiy1"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
;; TODO: (Sharlatan-20210213T162940+0000): I could not make tests run
|
||
`(#:tests? #f))
|
||
(inputs
|
||
`(("numpy" ,python-numpy)
|
||
("scikit-image" ,python-scikit-image)
|
||
("scipy" ,python-scipy)
|
||
("sep" ,python-sep)))
|
||
(home-page "https://astroalign.readthedocs.io/")
|
||
(synopsis "Astrometric Alignment of Images")
|
||
(description
|
||
"ASTROALIGN is a python module that will try to align two stellar
|
||
astronomical images, especially when there is no WCS information available.")
|
||
(license license:expat)))
|
||
|
||
(define-public python-skyfield
|
||
(package
|
||
(name "python-skyfield")
|
||
(version "1.39")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "skyfield" version))
|
||
(sha256
|
||
(base32 "1qh3k7g9dm6idppk87hnwxpx9a22xx98vav0zk31p6291drak3as"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
;; NOTE: (Sharlatan-20210207T163305+0000): tests depend on custom test
|
||
;; framework https://github.com/brandon-rhodes/assay
|
||
`(#:tests? #f))
|
||
(inputs
|
||
(list python-certifi python-jplephem python-numpy python-sgp4))
|
||
(home-page "https://rhodesmill.org/skyfield/")
|
||
(synopsis "Astronomy for Python")
|
||
(description
|
||
"Skyfield computes positions for the stars, planets, and satellites in
|
||
orbit around the Earth.")
|
||
(license license:expat)))
|