1948 lines
76 KiB
Scheme
1948 lines
76 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
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;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages julia-xyz)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix git-download)
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#:use-module (guix build-system julia)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages image)
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#:use-module (gnu packages imagemagick)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages tls)
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#:use-module (gnu packages web))
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(define-public julia-abstractffts
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(package
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(name "julia-abstractffts")
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(version "1.0.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/JuliaMath/AbstractFFTS.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
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(build-system julia-build-system)
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(inputs ;required for tests
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`(("julia-unitful" ,julia-unitful)))
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(home-page "https://github.com/JuliaGPU/Adapt.jl")
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(synopsis "General framework for fast Fourier transforms (FFTs)")
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(description "This package allows multiple FFT packages to co-exist with
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the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
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mainly not intended to be used directly. Instead, developers of packages that
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implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
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types/functions defined in AbstractFFTs.")
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(license license:expat)))
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(define-public julia-abstracttrees
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(package
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(name "julia-abstracttrees")
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(version "0.3.4")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/JuliaCollections/AbstractTrees.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8"))))
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(build-system julia-build-system)
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(home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/")
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(synopsis "Abstract Julia interfaces for working with trees")
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(description "This Julia package provides several utilities for working
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with tree-like data structures. Most importantly, it defines the
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@code{children} method that any package that contains such a data structure
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may import and extend in order to take advantage of any generic tree algorithm
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in this package.")
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(license license:expat)))
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(define-public julia-adapt
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(package
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(name "julia-adapt")
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(version "3.3.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/JuliaGPU/Adapt.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0zs5mjnql77jvrsm8lrlfkq5524wnrfxqxyqyjk8ka2xpxf9lp7n"))))
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(build-system julia-build-system)
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(home-page "https://github.com/JuliaGPU/Adapt.jl")
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(synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
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(description "This Julia package provides the @code{adapt(T, x)} function
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acts like @code{convert(T, x)}, but without the restriction of returning a
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@code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
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be GPU compatible without throwing away the wrapper.")
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(license license:expat)))
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(define-public julia-aqua
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(package
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(name "julia-aqua")
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(version "0.5.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/JuliaTesting/Aqua.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0zcvrwnyhh2kr4d2xv7ps8dh7byw78dx6yb1m9m4dblgscn5kypb"))))
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(build-system julia-build-system)
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(home-page "https://github.com/JuliaTesting/Aqua.jl")
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(synopsis "Automated quality assurance for Julia packages")
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(description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages},
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provides functions to run a few automatable checks for Julia packages.")
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(license license:expat)))
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(define-public julia-benchmarktools
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(package
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(name "julia-benchmarktools")
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(version "0.7.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/JuliaCI/BenchmarkTools.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "000izw9pj7cbh9r35nnwg2ijkb9dpfd5nkl2889b8b2dpsh4fi63"))))
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(build-system julia-build-system)
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(propagated-inputs `(("julia-json" ,julia-json)))
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(home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
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(synopsis "Benchmarking framework for the Julia language")
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(description "@code{BenchmarkTools.jl} makes performance tracking of Julia
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code easy by supplying a framework for writing and running groups of
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benchmarks as well as comparing benchmark results.")
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(license license:expat)))
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(define-public julia-bufferedstreams
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(package
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(name "julia-bufferedstreams")
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(version "1.0.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/BioJulia/BufferedStreams.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
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(build-system julia-build-system)
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;; The package is old and tests are using undefined functions. They also
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;; freeze, see
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;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
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(arguments
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'(#:tests? #f
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#:julia-package-name "BufferedStreams"))
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(propagated-inputs `(("julia-compat" ,julia-compat)))
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(home-page "https://github.com/BioJulia/BufferedStreams.jl")
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(synopsis "Fast composable IO streams")
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(description "@code{BufferedStreams.jl} provides buffering for IO
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operations. It can wrap any @code{IO} type automatically making incremental
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reading and writing faster.")
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(license license:expat)))
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(define-public julia-calculus
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(package
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(name "julia-calculus")
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(version "0.5.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/JuliaMath/Calculus.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
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(build-system julia-build-system)
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(home-page "https://github.com/JuliaMath/Calculus.jl")
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(synopsis "Common utilities for automatic differentiation")
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(description "This package provides tools for working with the basic
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calculus operations of differentiation and integration. The @code{Calculus}
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package produces approximate derivatives by several forms of finite
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differencing or produces exact derivative using symbolic differentiation. It
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can also be used to compute definite integrals by different numerical
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methods.")
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(license license:expat)))
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(define-public julia-chainrules
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(package
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(name "julia-chainrules")
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(version "0.7.65")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/JuliaDiff/ChainRules.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0697m5y5ryqnhw6cbk90rlydrxan2b308pzbl86qz4mzhypyk7yi"))))
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(build-system julia-build-system)
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(inputs ;required for test
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`(("julia-chainrulestestutils" ,julia-chainrulestestutils)
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("julia-finitedifferences" ,julia-finitedifferences)
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("julia-nanmath" ,julia-nanmath)
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("julia-specialfunctions" ,julia-specialfunctions)))
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(propagated-inputs
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`(("julia-chainrulescore" ,julia-chainrulescore)
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("julia-compat" ,julia-compat)
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("julia-reexport" ,julia-reexport)
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("julia-requires" ,julia-requires)))
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(home-page "https://github.com/JuliaDiff/ChainRules.jl")
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(synopsis "Common utilities for automatic differentiation")
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(description "The is package provides a variety of common utilities that
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can be used by downstream automatic differentiation (AD) tools to define and
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execute forward-, reverse-, and mixed-mode primitives.")
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(license license:expat)))
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(define-public julia-chainrulescore
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(package
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(name "julia-chainrulescore")
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(version "0.9.43")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/JuliaDiff/ChainRulesCore.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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||
(sha256
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(base32 "12by6zcxv0ivpf0f22gc9i067360syda9m2lxk0rhypxq4smj8w4"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required for tests
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`(("julia-benchmarktools" ,julia-benchmarktools)
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("julia-staticarrays" ,julia-staticarrays)))
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||
(propagated-inputs
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`(("julia-compat" ,julia-compat)))
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||
(home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
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(synopsis "Common utilities used by downstream automatic differentiation tools")
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(description "The package provides a light-weight dependency for defining
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sensitivities for functions without the need to depend on ChainRules itself.")
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(license license:expat)))
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(define-public julia-chainrulestestutils
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(package
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(name "julia-chainrulestestutils")
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(version "0.6.11")
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||
(source
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||
(origin
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||
(method git-fetch)
|
||
(uri (git-reference
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(url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
|
||
(sha256
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||
(base32 "1nx2fzxhh3q8znnjfjbgf7776scszixmigwna3hvmdfixsk58x0i"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
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`(("julia-chainrulescore" ,julia-chainrulescore)
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("julia-compat" ,julia-compat)
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("julia-finitedifference" ,julia-finitedifferences)))
|
||
(home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
|
||
(synopsis "Common utilities used by downstream automatic differentiation tools")
|
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(description "This package is designed to help in testing
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@code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
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entry points are @code{ChainRulesTestUtils.frule_test},
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@code{ChainRulesTestUtils.rrule_test}, and
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@code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
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rules against numerical differentiation (using @code{FiniteDifferences.jl}).
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@code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
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can be a test-only dependency, allowing it to have potentially heavy
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dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
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(license license:expat)))
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|
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(define-public julia-colors
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(package
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(name "julia-colors")
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(version "0.12.8")
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(source
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||
(origin
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||
(method git-fetch)
|
||
(uri (git-reference
|
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(url "https://github.com/JuliaGraphics/Colors.jl")
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||
(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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||
(sha256
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||
(base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3"))))
|
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(build-system julia-build-system)
|
||
(propagated-inputs
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`(("julia-colortypes" ,julia-colortypes)
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("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
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("julia-reexport" ,julia-reexport)))
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(home-page "https://github.com/JuliaGraphics/Colors.jl")
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(synopsis "Tools for dealing with color")
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||
(description "This package provides a wide array of functions for dealing
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with color. This includes conversion between colorspaces, measuring distance
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between colors, simulating color blindness, parsing colors, and generating
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color scales for graphics.")
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(license license:expat)))
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(define-public julia-colortypes
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(package
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(name "julia-colortypes")
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(version "0.11.0")
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(source
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||
(origin
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||
(method git-fetch)
|
||
(uri (git-reference
|
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(url "https://github.com/JuliaGraphics/ColorTypes.jl")
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||
(commit (string-append "v" version))))
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||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih"))))
|
||
(arguments
|
||
'(#:tests? #f)) ;require Documenter, not packaged yet
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
|
||
(home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
|
||
(synopsis "Basic color types and constructor")
|
||
(description "This minimalistic package serves as the foundation for
|
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working with colors in Julia. It defines basic color types and their
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constructors, and sets up traits and show methods to make them easier to work
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with.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-commonsubexpressions
|
||
(package
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||
(name "julia-commonsubexpressions")
|
||
(version "0.3.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/rdeits/CommonSubexpressions.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-macrotools" ,julia-macrotools)))
|
||
(home-page "https://github.com/rdeits/CommonSubexpressions.jl")
|
||
(synopsis "@code{@@cse} macro for Julia")
|
||
(description "This package provides the @code{@@cse} macro, which performs
|
||
common subexpression elimination.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-compat
|
||
(package
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||
(name "julia-compat")
|
||
(version "3.29.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaLang/Compat.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "00wn28kmzn61fpj3i8f6p987927h9315j9pzzvjpfk5c0ppd1p6q"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaLang/Compat.jl")
|
||
(synopsis "Compatibility across Julia versions")
|
||
(description "The Compat package is designed to ease interoperability
|
||
between older and newer versions of the Julia language. The Compat package
|
||
provides a macro that lets you use the latest syntax in a backwards-compatible
|
||
way.")
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||
(license license:expat)))
|
||
|
||
;;; TODO: Remove this autogenerated source package
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||
;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/>
|
||
(define-public julia-compilersupportlibraries-jll
|
||
(package
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||
(name "julia-compilersupportlibraries-jll")
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||
(version "0.4.0+1")
|
||
(source
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||
(origin
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||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl")
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||
(commit (string-append "CompilerSupportLibraries-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
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||
(base32 "03j6xdvps259mhdzpjqf41l65w2l9sahvxg4wrp34hcf69wkrzpy"))))
|
||
(build-system julia-build-system)
|
||
(arguments
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||
`(#:tests? #f ; no runtests.jl
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#:phases
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||
(modify-phases %standard-phases
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||
(add-after 'unpack 'override-binary-path
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||
(lambda* (#:key inputs #:allow-other-keys)
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||
(map
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||
(lambda (wrapper)
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||
(substitute* wrapper
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||
(("generate_wrapper_header.*")
|
||
(string-append
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||
"generate_wrapper_header(\"CompilerSupportLibraries\", \""
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||
(assoc-ref inputs "gfortran:lib") "\")\n"))))
|
||
;; There's a Julia file for each platform, override them all
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||
(find-files "src/wrappers/" "\\.jl$"))
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#t)))))
|
||
(inputs ;required by artifacts
|
||
`(("gfortran:lib" ,gfortran "lib")))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl")
|
||
(synopsis "Internal wrappers")
|
||
(description "This package provides compiler support for libraries. It is
|
||
an autogenerated source package constructed using @code{BinaryBuilder.jl}. The
|
||
originating @code{build_tarballs.jl} script can be found on the community
|
||
build tree Yggdrasil.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-constructionbase
|
||
(package
|
||
(name "julia-constructionbase")
|
||
(version "1.2.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaObjects/ConstructionBase.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1bmx5c5z9jxmyf2xjwwl5lhs9czmwq4isl0bkr78fak4j8brqr4n"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
|
||
(synopsis "Primitive functions for construction of objects")
|
||
(description "This very lightweight package provides primitive functions
|
||
for construction of objects.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-crayons
|
||
(package
|
||
(name "julia-crayons")
|
||
(version "4.0.4")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/KristofferC/Crayons.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/KristofferC/Crayons.jl")
|
||
(synopsis "Colored and styled strings for terminals")
|
||
(description "Crayons is a package that makes it simple to write strings in
|
||
different colors and styles to terminals. It supports the 16 system colors,
|
||
both the 256 color and 24 bit true color extensions, and the different text
|
||
styles available to terminals.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-datastructures
|
||
(package
|
||
(name "julia-datastructures")
|
||
(version "0.18.9")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaCollections/DataStructures.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
|
||
(propagated-inputs
|
||
`(("julia-compat" ,julia-compat)
|
||
("julia-orderedcollections" ,julia-orderedcollections)))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaCollections/DataStructures.jl")
|
||
(synopsis "Julia module providing different data structures")
|
||
(description "This package implements a variety of data structures,
|
||
including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
|
||
@code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-docstringextensions
|
||
(package
|
||
(name "julia-docstringextensions")
|
||
(version "0.8.4")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDocs/DocStringExtensions.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1fazv87f0j6hw03frx0gqgq9qpjbddqgccm9998a3329wrrs6gwd"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/")
|
||
(synopsis "Extensions for Julia's docsystem")
|
||
(description "This package provides a collection of useful extensions for
|
||
Julia's built-in docsystem. These are features that are not yet mature enough
|
||
to be considered for inclusion in Base, or that have sufficiently niche use
|
||
cases that including them with the default Julia installation is not seen as
|
||
valuable enough at this time.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-diffresults
|
||
(package
|
||
(name "julia-diffresults")
|
||
(version "1.0.3")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/DiffResults.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
|
||
(propagated-inputs
|
||
`(("julia-staticarrays" ,julia-staticarrays)))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaDiff/DiffResults.jl")
|
||
(synopsis "In-place differentiation methods of primal values at multi-order")
|
||
(description "This package provides the @code{DiffResult} type, which can
|
||
be passed to in-place differentiation methods instead of an output buffer.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-diffrules
|
||
(package
|
||
(name "julia-diffrules")
|
||
(version "1.0.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/DiffRules.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
|
||
(propagated-inputs
|
||
`(("julia-nanmath" ,julia-nanmath)
|
||
("julia-specialfunctions" ,julia-specialfunctions)))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaDiff/DiffRules.jl")
|
||
(synopsis "Primitive differentiation rules")
|
||
(description "This package provides primitive differentiation rules that
|
||
can be composed via various formulations of the chain rule. Using
|
||
@code{DiffRules}, new differentiation rules can defined, query whether or not
|
||
a given rule exists, and symbolically apply rules to simple Julia expressions.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-difftests
|
||
(package
|
||
(name "julia-difftests")
|
||
(version "0.1.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/DiffTests.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaDiff/DiffTests.jl")
|
||
(synopsis "Common test functions for differentiation tools")
|
||
(description "This package contains a common suite of test functions for
|
||
stressing the robustness of differentiation tools.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-example
|
||
(let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
|
||
(package
|
||
(name "julia-example")
|
||
(version "0.5.4") ;tag not created upstream
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaLang/Example.jl")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaLang/Example.jl")
|
||
(synopsis "Module providing examples")
|
||
(description "This package provides various examples.")
|
||
(license license:expat))))
|
||
|
||
(define-public julia-fillarrays
|
||
(package
|
||
(name "julia-fillarrays")
|
||
(version "0.11.7")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaArrays/FillArrays.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1q1qn9pb5dmppddnmf8gggdqyvivqh3ffvbblhn37smcf9r5sy7d"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required by tests
|
||
`(("julia-staticarrays" ,julia-staticarrays)))
|
||
(home-page "https://github.com/JuliaArrays/FillArrays.jl")
|
||
(synopsis "Lazy matrix representation")
|
||
(description "This package lazily represents matrices filled with
|
||
a single entry, as well as identity matrices. This package exports the
|
||
following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
|
||
@code{Trues} and @code{Falses}.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-finitedifferences
|
||
(package
|
||
(name "julia-finitedifferences")
|
||
(version "0.12.6")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/FiniteDifferences.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0kg8snnspn48i2rr99mwy0an3hzlgrnic7xnh3whj2ws2znw46hr"))))
|
||
(build-system julia-build-system)
|
||
(inputs
|
||
`(("julia-benchmarktools" ,julia-benchmarktools)))
|
||
(propagated-inputs
|
||
`(("julia-chainrulescore" ,julia-chainrulescore)
|
||
("julia-richardson" ,julia-richardson)
|
||
("julia-staticarrays" ,julia-staticarrays)))
|
||
(home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
|
||
(synopsis "Estimates derivatives with finite differences")
|
||
(description "This package calculates approximate derivatives numerically
|
||
using finite difference.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-fixedpointnumbers
|
||
(package
|
||
(name "julia-fixedpointnumbers")
|
||
(version "0.8.4")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaMath/FixedPointNumbers.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'disable-failing-test
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(substitute* "test/fixed.jl"
|
||
;; A deprecation warning is not thrown
|
||
(("@test_logs.*:warn" all) (string-append "# " all)))
|
||
#t)))))
|
||
(propagated-inputs `(("julia-compat" ,julia-compat)))
|
||
(home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
|
||
(synopsis "Fixed point types for Julia")
|
||
(description "@code{FixedPointNumbers.jl} implements fixed-point number
|
||
types for Julia. A fixed-point number represents a fractional, or
|
||
non-integral, number. In contrast with the more widely known floating-point
|
||
numbers, with fixed-point numbers the decimal point doesn't \"float\":
|
||
fixed-point numbers are effectively integers that are interpreted as being
|
||
scaled by a constant factor. Consequently, they have a fixed number of
|
||
digits (bits) after the decimal (radix) point.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-forwarddiff
|
||
(package
|
||
(name "julia-forwarddiff")
|
||
(version "0.10.18")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDiff/ForwardDiff.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required for tests
|
||
`(("julia-calculus" ,julia-calculus)
|
||
("julia-difftests" ,julia-difftests)))
|
||
(propagated-inputs
|
||
`(("julia-commonsubexpressions" ,julia-commonsubexpressions)
|
||
("julia-diffresults" ,julia-diffresults)
|
||
("julia-diffrules" ,julia-diffrules)
|
||
("julia-nanmath" ,julia-nanmath)
|
||
("julia-specialfunctions" ,julia-specialfunctions)
|
||
("julia-staticarrays" ,julia-staticarrays)))
|
||
(home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
|
||
(synopsis "Methods to take multidimensional derivatives")
|
||
(description "This package implements methods to take derivatives,
|
||
gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
|
||
functions (or any callable object, really) using forward mode automatic
|
||
differentiation (AD).")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-gumbo
|
||
(package
|
||
(name "julia-gumbo")
|
||
(version "0.8.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaWeb/Gumbo.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-abstracttrees" ,julia-abstracttrees)
|
||
("julia-gumbo-jll" ,julia-gumbo-jll)))
|
||
(home-page "https://github.com/JuliaWeb/Gumbo.jl")
|
||
(synopsis "Julia wrapper around Google's gumbo C library for parsing HTML")
|
||
(description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo
|
||
library for parsing HTML.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-gumbo-jll
|
||
(package
|
||
(name "julia-gumbo-jll")
|
||
(version "0.10.1+1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/Gumbo_jll.jl")
|
||
(commit (string-append "Gumbo-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "00a182x5hfpjzyvrxdn8wh4h67q899p5dzqp19a5s22si4g41k76"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; no runtests
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(let ((gumbo (string-append (assoc-ref inputs "gumbo-parser"))))
|
||
(for-each
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("(const libgumbo = )\"(.*)\"" all const libname)
|
||
(string-append const "\"" gumbo "/lib/" libname "\"\n"))
|
||
(("(global artifact_dir =).*" all m)
|
||
(string-append m " \"" gumbo "\""))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$"))))))))
|
||
(inputs
|
||
`(("gumbo-parser" ,gumbo-parser)))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/Gumbo_jll.jl")
|
||
(synopsis "Gumbo HTML parsing library wrappers")
|
||
(description "This package provides a wrapper for Gumbo HTML parsing library.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-http
|
||
(package
|
||
(name "julia-http")
|
||
(version "0.9.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaWeb/HTTP.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0ij0yci13c46p92m4zywvcs02nn8pm0abyfffiyhxvva6hq48lyl"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'install 'disable-network-tests
|
||
(lambda _
|
||
(substitute* "test/runtests.jl"
|
||
(("\"async.jl") "# \"async.jl")
|
||
(("\"client.jl") "# \"client.jl"))
|
||
(substitute* "test/aws4.jl"
|
||
(("@testset.*HTTP.request with AWS authentication.*" all)
|
||
(string-append all "return\n")))
|
||
(substitute* "test/insert_layers.jl"
|
||
(("@testset.*Inserted final layer runs handler.*" all)
|
||
(string-append all "return\n")))
|
||
(substitute* "test/multipart.jl"
|
||
(("@testset \"Setting of Content-Type.*" all)
|
||
(string-append all "return\n"))
|
||
(("@testset \"Deprecation of .*" all)
|
||
(string-append all "return\n")))
|
||
(substitute* "test/websockets.jl"
|
||
(("@testset.*External Host.*" all)
|
||
(string-append all "return\n")))
|
||
(substitute* "test/messages.jl"
|
||
(("@testset.*Read methods.*" all)
|
||
(string-append all "return\n"))
|
||
(("@testset.*Body - .*" all)
|
||
(string-append all "return\n"))
|
||
(("@testset.*Write to file.*" all)
|
||
(string-append all "return\n")))
|
||
#t)))))
|
||
(propagated-inputs
|
||
`(("julia-inifile" ,julia-inifile)
|
||
("julia-mbedtls" ,julia-mbedtls)
|
||
("julia-uris" ,julia-uris)))
|
||
;; required for tests
|
||
(inputs
|
||
`(("julia-json" ,julia-json)
|
||
("julia-bufferedstreams" ,julia-bufferedstreams)))
|
||
(home-page "https://juliaweb.github.io/HTTP.jl/")
|
||
(synopsis "HTTP support for Julia")
|
||
(description "@code{HTTP.jl} is a Julia library for HTTP Messages,
|
||
implementing both a client and a server.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-ifelse
|
||
(package
|
||
(name "julia-ifelse")
|
||
(version "0.1.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/sciml/ifelse.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/sciml/ifelse.jl")
|
||
(synopsis "Function form of the if-else conditional statement")
|
||
(description "This package provides a convenient function form of the
|
||
conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-imagemagick-jll
|
||
(package
|
||
(name "julia-imagemagick-jll")
|
||
(version "6.9.10-12+3")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/ImageMagick_jll.jl")
|
||
(commit (string-append "ImageMagick-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"1a0vnnjl52yqi7jgpr0dmx5ah5nlpylv5hc8aw2l89b9f36ff8jg"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; no runtests
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
;; Make sure we match the current library.
|
||
(("libMagickWand-6.Q16.so.6") "libMagickWand-6.Q16.so.7")
|
||
(("artifact\"ImageMagick\"")
|
||
(string-append "\"" (assoc-ref inputs "imagemagick") "\""))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$")))))))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)
|
||
("julia-jpegturbo-jll" ,julia-jpegturbo-jll)
|
||
("julia-libpng-jll" ,julia-libpng-jll)
|
||
("julia-libtiff-jll" ,julia-libtiff-jll)
|
||
("julia-zlib-jll" ,julia-zlib-jll)))
|
||
(inputs
|
||
`(("imagemagick" ,imagemagick)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/ImageMagick_jll.jl")
|
||
(synopsis "Imagemagick library wrappers")
|
||
(description "This package provides a wrapper for Imagemagick.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-inifile
|
||
(package
|
||
(name "julia-inifile")
|
||
(version "0.5.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaIO/IniFile.jl")
|
||
(commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaIO/IniFile.jl")
|
||
(synopsis "Reading Windows-style INI files")
|
||
(description "This is a Julia package that defines an IniFile type that
|
||
interfaces with @file{.ini} files.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-iocapture
|
||
(package
|
||
(name "julia-iocapture")
|
||
(version "0.2.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaDocs/IOCapture.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0ajlfh8f1g23bx5f8h70nrgr0zfwxaqnpxlka8l4qhjmnfqxl43a"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaDocs/IOCapture.jl")
|
||
(synopsis "Capture standard output and error streams")
|
||
(description "This package provides the @code{IOCapture.capture(f)}
|
||
function, which captures the standard output and standard error, and returns it
|
||
as a string together with the return value.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-irtools
|
||
(package
|
||
(name "julia-irtools")
|
||
(version "0.4.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/FluxML/IRTools.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0wwzy77jcdnffnd5fr6xan7162g4wydz67igrq82wflwnrhlcx5y"))))
|
||
(arguments
|
||
'(#:tests? #f)) ;require Documenter, not packaged yet
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-macrotools" ,julia-macrotools)))
|
||
(home-page "https://github.com/FluxML/IRTools.jl")
|
||
(synopsis "Simple and flexible IR format")
|
||
(description "This package provides a simple and flexible IR format,
|
||
expressive enough to work with both lowered and typed Julia code, as well as
|
||
external IRs. It can be used with Julia metaprogramming tools such as
|
||
Cassette.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-jllwrappers
|
||
(package
|
||
(name "julia-jllwrappers")
|
||
(version "1.3.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaPackaging/JLLWrappers.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0v7xhsv9z16d657yp47vgc86ggc01i1wigqh3n0d7i1s84z7xa0h"))))
|
||
(arguments
|
||
;; Wants to download stuff
|
||
'(#:tests? #f
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'custom-override-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
;; Make @generate_wrapper_header take an optional argument that
|
||
;; guix packagers can pass to override the default "override"
|
||
;; binary path. This won't be needed when something like
|
||
;; https://github.com/JuliaPackaging/JLLWrappers.jl/pull/27
|
||
;; will be merged.
|
||
(substitute* "src/wrapper_generators.jl"
|
||
(("generate_wrapper_header.*")
|
||
"generate_wrapper_header(src_name, override_path = nothing)\n")
|
||
(("pkg_dir = .*" all)
|
||
(string-append
|
||
all "\n" "override = something(override_path,"
|
||
"joinpath(dirname(pkg_dir), \"override\"))\n"))
|
||
(("@static if isdir.*") "@static if isdir($override)\n")
|
||
(("return joinpath.*") "return $override\n"))
|
||
#t)))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaPackaging/JLLWrappers.jl")
|
||
(synopsis "Julia macros used by JLL packages")
|
||
(description "This package contains Julia macros that enable JLL packages
|
||
to generate themselves. It is not intended to be used by users, but rather is
|
||
used in autogenerated packages via @code{BinaryBuilder.jl}.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-jpegturbo-jll
|
||
(package
|
||
(name "julia-jpegturbo-jll")
|
||
(version "2.0.1+2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/JpegTurbo_jll.jl")
|
||
(commit (string-append "JpegTurbo-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"1xp1x0hrj337bgwwffwpyq7xg031j2a38fim29lixqa0a0y80x6y"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; no runtests
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("artifact\"JpegTurbo\"")
|
||
(string-append "\"" (assoc-ref inputs "libjpeg-turbo") "\""))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$")))))))
|
||
(inputs
|
||
`(("libjpeg-turbo" ,libjpeg-turbo)))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/JpegTurbo_jll.jl")
|
||
(synopsis "Libjpeg-turbo library wrappers")
|
||
(description "This package provides a wrapper for the libjpeg-turbo library.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-json
|
||
(package
|
||
(name "julia-json")
|
||
(version "0.21.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaIO/JSON.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-datastructures" ,julia-datastructures)
|
||
("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
|
||
("julia-parsers" ,julia-parsers)
|
||
("julia-offsetarrays" ,julia-offsetarrays)))
|
||
(home-page "https://github.com/JuliaIO/JSON.jl")
|
||
(synopsis "JSON parsing and printing library for Julia")
|
||
(description "@code{JSON.jl} is a pure Julia module which supports parsing
|
||
and printing JSON documents.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-libpng-jll
|
||
(package
|
||
(name "julia-libpng-jll")
|
||
(version "1.6.37+5")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/LibPNG_jll.jl")
|
||
(commit (string-append "libpng-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"10azxv26j8r193dg9i9x7ajm3frhwbhj8zzi40fj59fxm81xz6dx"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; no runtests
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("artifact\"libpng\"")
|
||
(string-append "\"" (assoc-ref inputs "libpng") "\""))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$")))))))
|
||
(inputs
|
||
`(("libpng" ,libpng)))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)
|
||
("julia-zlib-jll" ,julia-zlib-jll)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/LibPNG_jll.jl")
|
||
(synopsis "Libpng library wrappers")
|
||
(description "This package provides a wrapper for the libpng library.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-libtiff-jll
|
||
(package
|
||
(name "julia-libtiff-jll")
|
||
(version "4.1.0+1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/Libtiff_jll.jl")
|
||
(commit (string-append "Libtiff-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"07zzhmwmh2g4645ghv76z40hza2ghlb7sw15b1pii7f9kfcsgf45"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; no runtests
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("artifact\"Libtiff\"")
|
||
(string-append "\"" (assoc-ref inputs "libtiff") "\""))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$")))))))
|
||
(inputs
|
||
`(("libtiff" ,libtiff)))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)
|
||
("julia-jpegturbo-jll" ,julia-jpegturbo-jll)
|
||
("julia-zlib-jll" ,julia-zlib-jll)
|
||
("julia-zstd-jll" ,julia-zstd-jll)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/Libtiff_jll.jl")
|
||
(synopsis "Libtiff library wrappers")
|
||
(description "This package provides a wrapper for libtiff")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-macrotools
|
||
(package
|
||
(name "julia-macrotools")
|
||
(version "0.5.6")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/FluxML/MacroTools.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://fluxml.ai/MacroTools.jl")
|
||
(synopsis "Tools for working with Julia code and expressions")
|
||
(description "This library provides tools for working with Julia code and
|
||
expressions. This includes a template-matching system and code-walking tools
|
||
that let you do deep transformations of code.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-mbedtls
|
||
(package
|
||
(name "julia-mbedtls")
|
||
(version "1.0.3")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaLang/MbedTLS.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'install 'disable-network-tests
|
||
;; Tries to connect to httpbin.org
|
||
(lambda _
|
||
(substitute* "test/runtests.jl"
|
||
(("testhost =") "return #"))
|
||
#t)))))
|
||
(propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
|
||
(home-page "https://github.com/JuliaLang/MbedTLS.jl")
|
||
(synopsis "Apache's mbed TLS library wrapper")
|
||
(description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
|
||
TLS} and cryptography C library for Julia.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-mbedtls-jll
|
||
(package
|
||
(name "julia-mbedtls-jll")
|
||
;; version 2.25.0+0 is not compatible with current mbedtls 2.23.0,
|
||
;; upgrade this when mbedtls is updated in guix
|
||
(version "2.24.0+1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl")
|
||
(commit (string-append "MbedTLS-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0kk9dlxdh7yms21npgrdfmjbj8q8ng6kdhrzw3jr2d7rp696kp99"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; No runtests.jl
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("generate_wrapper_header.*")
|
||
(string-append
|
||
"generate_wrapper_header(\"MbedTLS\", \""
|
||
(assoc-ref inputs "mbedtls-apache") "\")\n"))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$"))
|
||
#t)))))
|
||
(inputs `(("mbedtls-apache" ,mbedtls-apache)))
|
||
(propagated-inputs `(("julia-jllwrappers" ,julia-jllwrappers)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl")
|
||
(synopsis "Apache's mbed TLS binary wrappers")
|
||
(description "This Julia module provides @code{mbed TLS} libraries and
|
||
wrappers.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-msgpack
|
||
(package
|
||
(name "julia-msgpack")
|
||
(version "1.1.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaIO/MsgPack.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaIO/MsgPack.jl")
|
||
(synopsis "Julia MsgPack implementation")
|
||
(description "@code{MsgPack.jl} is a MessagePack implementation in pure
|
||
Julia, with type-driven, overloadable packing/unpacking functionality.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-nanmath
|
||
(package
|
||
(name "julia-nanmath")
|
||
(version "0.3.5")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/mlubin/NaNMath.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/mlubin/NaNMath.jl")
|
||
(synopsis "Implementations of basic math functions")
|
||
(description "Implementations of basic math functions which return
|
||
@code{NaN} instead of throwing a @code{DomainError}.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-orderedcollections
|
||
(package
|
||
(name "julia-orderedcollections")
|
||
(version "1.4.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaCollections/OrderedCollections.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
|
||
(synopsis "Associative containers that preserve insertion order")
|
||
(description "This package implements @code{OrderedDicts} and
|
||
@code{OrderedSets}, which are similar to containers in base Julia. However,
|
||
during iteration the @code{Ordered*} containers return items in the order in
|
||
which they were added to the collection.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-offsetarrays
|
||
(package
|
||
(name "julia-offsetarrays")
|
||
(version "1.8.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaArrays/OffsetArrays.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0s02175pb2pkwg87g7vva2hsrh2ksj9ariw9ccd7axbdm2vd2zcs"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-adapt" ,julia-adapt)))
|
||
;; CatIndices depends on OffsetArrays, introducing a recursive dependency
|
||
(arguments '(#:tests? #f))
|
||
(home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
|
||
(synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
|
||
(description "@code{OffsetArrays.jl} provides Julia users with arrays that
|
||
have arbitrary indices, similar to those found in some other programming
|
||
languages like Fortran.")
|
||
(license license:expat)))
|
||
|
||
;;; TODO: Remove this autogenerated source package
|
||
;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/>
|
||
(define-public julia-openspecfun-jll
|
||
(let ((commit "6c505cce3bdcd9cd2b15b4f9362ec3a42c4da71c"))
|
||
(package
|
||
(name "julia-openspecfun-jll")
|
||
(version "0.5.3+4") ;tag not created upstream
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0bl2gcgndsbiwhwy8fl070cjm1fyf9kxj6gkikgirmzgjl29iakn"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:tests? #f ; no runtests.jl
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("generate_wrapper_header.*")
|
||
(string-append
|
||
"generate_wrapper_header(\"OpenSpecFun\", \""
|
||
(assoc-ref inputs "openspecfun") "\")\n"))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$"))
|
||
#t)))))
|
||
(inputs
|
||
`(("openspecfun" ,openspecfun)))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)
|
||
("julia-compilersupportlibraries-jll" ,julia-compilersupportlibraries-jll)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl")
|
||
(synopsis "Internal wrappers")
|
||
(description "This package provides a wrapper for OpenSpecFun. It is an
|
||
autogenerated source package constructed using @code{BinaryBuilder.jl}. The
|
||
originating @code{build_tarballs.jl} script can be found on the community
|
||
build tree Yggdrasil.")
|
||
(license license:expat))))
|
||
|
||
(define-public julia-parameters
|
||
(package
|
||
(name "julia-parameters")
|
||
(version "0.12.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/mauro3/Parameters.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-orderedcollections" ,julia-orderedcollections)
|
||
("julia-unpack" ,julia-unpack)))
|
||
(home-page "https://github.com/mauro3/Parameters.jl")
|
||
(synopsis "Numerical-model parameter helpers")
|
||
(description "This package contains types with default field values, keyword
|
||
constructors and (un-)pack macros. Keyword functions can be slow in Julia,
|
||
however, the normal positional constructor is also provided and could be used in
|
||
performance critical code.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-parsers
|
||
(package
|
||
(name "julia-parsers")
|
||
(version "1.1.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaData/Parsers.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaData/Parsers.jl")
|
||
(synopsis "Fast parsing machinery for basic types in Julia")
|
||
(description "@code{Parsers.jl} is a collection of type parsers and
|
||
utilities for Julia.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-pdmats
|
||
(package
|
||
(name "julia-pdmats")
|
||
(version "0.11.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaStats/PDMats.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1gyhfjmb0qlqgx2398b356cph25bnpjagcslckv41bzyf8pg3ybl"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaStats/PDMats.jl")
|
||
(synopsis
|
||
"Uniform Interface for positive definite matrices of various structures")
|
||
(description "PDMats.jl supports efficient computation on positive definite
|
||
matrices of various structures. In particular, it provides uniform interfaces
|
||
to use positive definite matrices of various structures for writing generic
|
||
algorithms, while ensuring that the most efficient implementation is used in
|
||
actual computation.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-recipesbase
|
||
(package
|
||
(name "julia-recipesbase")
|
||
(version "1.1.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaPlots/RecipesBase.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaPlots/RecipesBase.jl")
|
||
(synopsis "Define transformation recipes on user types")
|
||
(description "This package implements handy macros @code{@@recipe} and
|
||
@code{@@series} which will define a custom transformation and attach attributes
|
||
for user types. Its design is an attempt to simplify and generalize the summary
|
||
and display of types and data from external packages. With this package it is
|
||
possible to describe visualization routines that can be used as components in
|
||
more complex visualizations.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-reexport
|
||
(package
|
||
(name "julia-reexport")
|
||
(version "1.0.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/simonster/Reexport.jl")
|
||
(commit version)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1yhhja1zz6dy5f4fd19bdwd6jwgj7q4w3avzgyg1hjhmdl8jrh0s"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/simonster/Reexport.jl")
|
||
(synopsis "Re-export modules and symbols")
|
||
(description "This package provides tools to re-export modules and symbols.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-requires
|
||
(package
|
||
(name "julia-requires")
|
||
(version "1.1.3")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaPackaging/Requires.jl/")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
|
||
(build-system julia-build-system)
|
||
(inputs ;required for test
|
||
`(("julia-example" ,julia-example)))
|
||
(propagated-inputs
|
||
`(("julia-colors" ,julia-colors)))
|
||
(home-page "https://github.com/JuliaPackaging/Requires.jl/")
|
||
(synopsis "Faster package loader")
|
||
(description "This package make loading packages faster, maybe. It
|
||
supports specifying glue code in packages which will load automatically when
|
||
another package is loaded, so that explicit dependencies (and long load times)
|
||
can be avoided.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-richardson
|
||
(package
|
||
(name "julia-richardson")
|
||
(version "1.4.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaMath/Richardson.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://juliapackages.com/p/richardson")
|
||
(synopsis "Extrapolate function using Richardson method")
|
||
(description "This package provides a function extrapolate that
|
||
extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
|
||
only at a geometric sequence of points @code{> x0} (or optionally @code{<
|
||
x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
|
||
tableau, which adaptively increases the degree of an extrapolation polynomial
|
||
until convergence is achieved to a desired tolerance (or convergence stalls
|
||
due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
|
||
high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
|
||
other power series in @code{h}.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-safetestsets
|
||
;; The only release tag is the first commit in the repository.
|
||
(let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21")
|
||
(revision "1"))
|
||
(package
|
||
(name "julia-safetestsets")
|
||
(version (git-version "0.0.1" revision commit))
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/YingboMa/SafeTestsets.jl")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:julia-package-name "SafeTestsets"))
|
||
(native-inputs
|
||
`(("julia-staticarrays" ,julia-staticarrays)))
|
||
(home-page "https://github.com/YingboMa/SafeTestsets.jl")
|
||
(synopsis "Julia's testset in a module")
|
||
(description "This package contains the testset from Julia, packaged into
|
||
a loadable module.")
|
||
(license license:expat))))
|
||
|
||
(define-public julia-sortingalgorithms
|
||
(package
|
||
(name "julia-sortingalgorithms")
|
||
(version "1.0.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaCollections/SortingAlgorithms.jl")
|
||
;; Tagging releases is hard:
|
||
;; https://github.com/JuliaCollections/SortingAlgorithms.jl/issues/41#issuecomment-840587380
|
||
(commit "aa2b98d384ddd132aae0219e68fb63b92513cb35")))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "13zbx18psxrg4fvkqgp0m7g484vrama2xm6902bbls30801hgljg"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:tests? #f)) ; cycle with StatsBase.jl
|
||
(propagated-inputs
|
||
`(("julia-datastructures" ,julia-datastructures)))
|
||
;(native-inputs
|
||
; `(("julia-statsbase" ,julia-statsbase)))
|
||
(home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl")
|
||
(synopsis "Extra sorting algorithms extending Julia's sorting API")
|
||
(description "The SortingAlgorithms package provides three sorting
|
||
algorithms that can be used with Julia's standard sorting API: heapsort,
|
||
timsort and radixsort.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-specialfunctions
|
||
(package
|
||
(name "julia-specialfunctions")
|
||
(version "1.3.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaMath/SpecialFunctions.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1rfhrrkzi3ils7fklbn35ki1yp5x88fi71qknfwqyw4pk8cf8p80"))))
|
||
(build-system julia-build-system)
|
||
(inputs
|
||
`(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
|
||
(propagated-inputs
|
||
`(("julia-chainrulescore" ,julia-chainrulescore)
|
||
("julia-openspecfun-jll" ,julia-openspecfun-jll)))
|
||
(home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
|
||
(synopsis "Special mathematical functions")
|
||
(description "This package provides special mathematical functions,
|
||
including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
|
||
cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
|
||
polygamma functions.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-stablerngs
|
||
(package
|
||
(name "julia-stablerngs")
|
||
(version "1.0.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaRandom/StableRNGs.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaRandom/StableRNGs.jl")
|
||
(synopsis "Julia RNG with stable streams")
|
||
(description "This package intends to provide a simple RNG with stable
|
||
streams, suitable for tests in packages which need reproducible streams of
|
||
random numbers across Julia versions. Indeed, the Julia RNGs provided by
|
||
default are documented to have non-stable streams (which for example enables
|
||
some performance improvements).")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-static
|
||
(package
|
||
(name "julia-static")
|
||
(version "0.2.4")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/SciML/Static.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "01rbiysrkaca03gh55rc5zykkp63bhzaqgrxxj88lnisrbzmf0d2"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-ifelse" ,julia-ifelse)))
|
||
(native-inputs
|
||
`(("julia-aqua" ,julia-aqua)))
|
||
(home-page "https://github.com/SciML/Static.jl")
|
||
(synopsis "Static types useful for dispatch and generated functions")
|
||
(description "Static.jl defines a limited set of statically parameterized
|
||
types and a common interface that is shared between them.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-staticarrays
|
||
(package
|
||
(name "julia-staticarrays")
|
||
(version "1.2.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaArrays/StaticArrays.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0z4g1kk6gy514dyafb559gcp4264ffx6h28ffczdvkyk8gm9j0m7"))))
|
||
(build-system julia-build-system)
|
||
(inputs
|
||
`(("julia-benchmarktools" ,julia-benchmarktools)))
|
||
(home-page "https://github.com/JuliaArrays/StaticArrays.jl")
|
||
(synopsis "Statically sized arrays")
|
||
(description "This package provides a framework for implementing
|
||
statically sized arrays in Julia, using the abstract type
|
||
@code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
|
||
@code{StaticArray} will provide fast implementations of common array and
|
||
linear algebra operations.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-suppressor
|
||
(package
|
||
(name "julia-suppressor")
|
||
(version "0.2.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaIO/Suppressor.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/JuliaIO/Suppressor.jl")
|
||
(synopsis "Capture stdout and sterr")
|
||
(description "Julia macros for suppressing and/or capturing output (stdout),
|
||
warnings (stderr) or both streams at the same time.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-unpack
|
||
(package
|
||
(name "julia-unpack")
|
||
(version "1.0.2")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/mauro3/UnPack.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a"))))
|
||
(build-system julia-build-system)
|
||
(home-page "https://github.com/mauro3/UnPack.jl")
|
||
(synopsis "Pack and Unpack macros for Julia")
|
||
(description "The @code{@@unpack} and @code{@@pack!} macros work to unpack
|
||
types, modules, and dictionaries.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-uris
|
||
(package
|
||
(name "julia-uris")
|
||
(version "1.3.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaWeb/URIs.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:julia-package-name "URIs" ;required to run tests
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'check 'change-dir
|
||
;; Tests must be run from the testdir
|
||
(lambda* (#:key source outputs #:allow-other-keys)
|
||
(let ((out (assoc-ref outputs "out")))
|
||
(chdir
|
||
(string-append out "/share/julia/packages/URIs/test")))
|
||
#t)))))
|
||
;; required for tests
|
||
(inputs `(("julia-json" ,julia-json)))
|
||
(home-page "https://github.com/JuliaWeb/URIs.jl")
|
||
(synopsis "URI parsing in Julia")
|
||
(description "@code{URIs.jl} is a Julia package that allows parsing and
|
||
working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
|
||
3986.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-unitful
|
||
(package
|
||
(name "julia-unitful")
|
||
(version "1.7.0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/PainterQubits/Unitful.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "03nq2nc2mwiqg3z1gksfsnyd7dmsjsya5c2v1n5h0ab22vm59f0m"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-constructionbase" ,julia-constructionbase)))
|
||
(home-page "https://painterqubits.github.io/Unitful.jl/stable/")
|
||
(synopsis "Physical units in Julia")
|
||
(description "This package supports SI units and also many other unit
|
||
system.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-zipfile
|
||
(package
|
||
(name "julia-zipfile")
|
||
(version "0.9.3")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/fhs/ZipFile.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-zlib-jll" ,julia-zlib-jll)))
|
||
(home-page "https://github.com/fhs/ZipFile.jl")
|
||
(synopsis "Read/Write ZIP archives in Julia")
|
||
(description "This module provides support for reading and writing ZIP
|
||
archives in Julia.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-zlib-jll
|
||
(package
|
||
(name "julia-zlib-jll")
|
||
(version "1.2.12+1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/Zlib_jll.jl")
|
||
(commit (string-append "Zlib-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"05ih0haqapkzr40swvq63cafnqlc4yp6yfa1wvdyq8v3n4kxhfqa"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; no runtests
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("generate_wrapper_header.*")
|
||
(string-append
|
||
"generate_wrapper_header(\"Zlib\", \""
|
||
(assoc-ref inputs "zlib") "\")\n"))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$")))))))
|
||
(inputs
|
||
`(("zlib" ,zlib)))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/Zlib_jll.jl")
|
||
(synopsis "Zlib library wrappers")
|
||
(description "This package provides a wrapper for Zlib.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-zstd-jll
|
||
(package
|
||
(name "julia-zstd-jll")
|
||
(version "1.5.0+0")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/JuliaBinaryWrappers/Zstd_jll.jl")
|
||
(commit (string-append "Zstd-v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"15g5wsvga4p9bjmx97xqwqdnfzfbwfl6c4a9iaphcncwgcrnw6y6"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
'(#:tests? #f ; no runtests
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'override-binary-path
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(map
|
||
(lambda (wrapper)
|
||
(substitute* wrapper
|
||
(("generate_wrapper_header.*")
|
||
(string-append
|
||
"generate_wrapper_header(\"Zstd\", \""
|
||
(assoc-ref inputs "zstd:lib") "\")\n"))))
|
||
;; There's a Julia file for each platform, override them all
|
||
(find-files "src/wrappers/" "\\.jl$")))))))
|
||
(inputs
|
||
`(("zstd:lib" ,zstd "lib")))
|
||
(propagated-inputs
|
||
`(("julia-jllwrappers" ,julia-jllwrappers)))
|
||
(home-page "https://github.com/JuliaBinaryWrappers/Zstd_jll.jl")
|
||
(synopsis "Zstd library wrappers")
|
||
(description "This package provides a wrapper for the zstd library.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-zygoterules
|
||
(package
|
||
(name "julia-zygoterules")
|
||
(version "0.2.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/FluxML/ZygoteRules.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
|
||
(build-system julia-build-system)
|
||
(propagated-inputs
|
||
`(("julia-macrotools" ,julia-macrotools)))
|
||
(home-page "https://github.com/FluxML/ZygoteRules.jl")
|
||
(synopsis "Add minimal custom gradients to Zygote")
|
||
(description "Minimal package which enables to add custom gradients to
|
||
Zygote, without depending on Zygote itself.")
|
||
(license license:expat)))
|
||
|
||
(define-public julia-zygote
|
||
(package
|
||
(name "julia-zygote")
|
||
(version "0.6.10")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/FluxML/Zygote.jl")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32 "0qqjzhiqghj07mab24b0n0h4xfzq8r1s9hccrmx1lwjkkskhc5f9"))))
|
||
(build-system julia-build-system)
|
||
(arguments
|
||
`(#:tests? #f)) ;require CUDA, not packaged yet
|
||
(propagated-inputs
|
||
`(("julia-abstractffs" ,julia-abstractffts)
|
||
("julia-chainrules" ,julia-chainrules)
|
||
("julia-diffrules" ,julia-diffrules)
|
||
("julia-fillarrays" ,julia-fillarrays)
|
||
("julia-forwarddiff" ,julia-forwarddiff)
|
||
("julia-irtools" ,julia-irtools)
|
||
("julia-macrotools" ,julia-macrotools)
|
||
("julia-nanmath" ,julia-nanmath)
|
||
("julia-requires" ,julia-requires)
|
||
("julia-specialfunctions" ,julia-specialfunctions)
|
||
("julia-zygote-rules" ,julia-zygoterules)))
|
||
(home-page "https://fluxml.ai/Zygote.jl")
|
||
(synopsis "Automatic differentiation in Julia")
|
||
(description "Zygote provides source-to-source automatic
|
||
differentiation (AD) in Julia, and is the next-generation AD system for the
|
||
Flux differentiable programming framework.")
|
||
(license license:expat)))
|