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guix/gnu/packages
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Tobias Geerinckx-Rice 0971f8bd88
gnu: Remove r-biocinstaller. 
It requires R < 3.6 and is no longer supported.

* gnu/packages/bioinformatics.scm (r-biocinstaller): Define as
deprecated in favour of r-biocmanager.
2019-07-08 16:13:11 +02:00
..
aux-files
bootstrap
patches gnu: Add csvkit. 2019-07-07 15:48:20 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: di: Update to 4.47.1. 2019-06-29 06:28:50 +02:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: cmh: Fix build. 2019-07-08 15:48:07 +02:00
android.scm gnu: android-googletest: Downgrade to 1.8.0. 2019-06-25 17:20:19 +02:00
animation.scm
anthy.scm
antivirus.scm
apl.scm gnu: apl: Add pcre support. 2019-06-24 18:59:21 +03:00
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm gnu: Add celestia-gtk. 2019-06-26 15:59:58 +02:00
attr.scm
audio.scm gnu: snd: Update to 19.5. 2019-07-03 17:30:21 +02:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm
base.scm
bash.scm gnu: bash-completion: Fix cross-compilation. 2019-06-25 21:34:36 +02:00
batik.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7. 2019-07-08 15:33:35 +02:00
bioinformatics.scm gnu: Remove r-biocinstaller. 2019-07-08 16:13:11 +02:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm
bootstrap.scm
build-tools.scm
busybox.scm
c.scm
calcurse.scm gnu: calcurse: Update to 4.5.0. 2019-06-25 16:24:11 +02:00
calendar.scm
ccache.scm
cdrom.scm
certs.scm
check.scm gnu: behave: Fix build. 2019-07-01 12:08:08 +02:00
chemistry.scm
chez.scm
chromium.scm gnu: ungoogled-chromium: Build against ICU 64. 2019-06-30 14:11:00 +02:00
ci.scm gnu: Remove hydra. 2019-06-18 20:12:42 +03:00
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm
commencement.scm
compression.scm gnu: Add quazip. 2019-06-28 09:34:25 +02:00
compton.scm
conky.scm
connman.scm
cook.scm
coq.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: r-future-apply: Update to 1.3.0. 2019-06-29 01:34:44 +02:00
crates-io.scm
cross-base.scm
crypto.scm gnu: tomb: Update to 2.6. 2019-07-02 20:57:33 +02:00
cryptsetup.scm
cups.scm
curl.scm
cyrus-sasl.scm
databases.scm gnu: Add python-crate. 2019-07-07 15:48:20 +02:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm
dejagnu.scm
dico.scm
dictionaries.scm gnu: grammalecte: Update to 1.2. 2019-07-06 00:10:44 +02:00
digest.scm
direct-connect.scm
disk.scm gnu: dosfstools: Enable compat symlinks. 2019-07-08 13:05:56 +02:00
display-managers.scm
django.scm
djvu.scm
dlang.scm
dns.scm gnu: bind: Update to 9.14.3 [fixes CVE-2019-6471]. 2019-06-20 00:28:14 +02:00
docbook.scm
docker.scm
documentation.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm gnu: snap: Update to 5. 2019-06-28 10:11:12 +02:00
efi.scm
electronics.scm
elf.scm
elixir.scm
emacs-xyz.scm gnu: Add emacs-polymode-org. 2019-07-08 13:05:56 +02:00
emacs.scm
embedded.scm
emulators.scm gnu: mame: Update to 0.211. 2019-06-27 13:28:33 +02:00
enchant.scm gnu: enchant: Update to 2.2.4. 2019-06-23 15:05:00 +02:00
engineering.scm
enlightenment.scm
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm
file.scm
finance.scm gnu: monero-gui: Update to 0.14.1.0. 2019-07-03 12:03:07 +02:00
firmware.scm
flashing-tools.scm gnu: flashrom: Update to 1.1. 2019-06-29 06:28:50 +02:00
flex.scm
fltk.scm
fonts.scm
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm gnu: weston: Update to 6.0.1. 2019-06-24 22:10:49 +02:00
freeipmi.scm
fribidi.scm
ftp.scm gnu: filezilla: Update to 3.42.1. 2019-06-19 15:42:50 +02:00
fvwm.scm
game-development.scm gnu: deutex: Don't use NAME in source URI. 2019-06-25 16:24:11 +02:00
games.scm gnu: supertux: Fix homepage. 2019-06-26 19:45:34 +02:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genealogy.scm gnu: Add gramps 2019-06-26 15:59:58 +02:00
genimage.scm
geo.scm gnu: Add osm-gps-map 2019-06-26 15:59:58 +02:00
gettext.scm
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm gnu: Add mesa-opencl-icd. 2019-06-26 16:24:58 +02:00
glib.scm gnu: dbus: Fix CVE-2019-12749. 2019-06-20 22:49:31 +02:00
gnome.scm gnu: Update lollypop to 1.1.3.1. 2019-07-07 12:24:19 +01:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm gnu: signing-party: Update to 2.10. 2019-06-25 11:08:37 +03:00
gnustep.scm
gnuzilla.scm gnu: icecat: Update to 60.7.2-guix1 [security fixes]. 2019-06-21 05:20:36 -04:00
gobby.scm
golang.scm
gperf.scm
gpodder.scm
gprolog.scm
gps.scm gnu: gama: Update to 2.06. 2019-07-08 10:38:23 +03:00
graph.scm
graphics.scm
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm gnu: gstreamer: Fix buffer offset problem. 2019-06-29 23:17:13 +02:00
gtk.scm gnu: gtksourceviewmm: Build against gtksourceview@3. 2019-06-30 20:14:58 +02:00
guile-wm.scm
guile-xyz.scm gnu: emacsy: Remove big 'texlive' dependency. 2019-07-05 18:10:29 +02:00
guile.scm gnu: guile: Add 2.2.6. 2019-07-01 12:29:34 +02:00
gv.scm
gxmessage.scm
ham-radio.scm
hardware.scm
haskell-apps.scm
haskell-check.scm gnu: Add ghc-hedgehog. 2019-07-02 18:33:52 +02:00
haskell-crypto.scm
haskell-web.scm
haskell.scm gnu: Add ghc-validation. 2019-07-02 18:33:52 +02:00
hexedit.scm
hugs.scm
hurd.scm
hyperledger.scm
ibus.scm
icu4c.scm gnu: ungoogled-chromium: Build against ICU 64. 2019-06-30 14:11:00 +02:00
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm gnu: geeqie: Update to commit c220dde. 2019-07-03 12:03:07 +02:00
image.scm gnu: hugin: Build against Exiv2 0.26. 2019-07-05 18:10:29 +02:00
imagemagick.scm gnu: GraphicsMagick: Update to 1.3.32. 2019-07-03 16:24:47 -04:00
inklingreader.scm
inkscape.scm
ipfs.scm
irc.scm gnu: irssi: Update to 1.1.3. [fixes CVE-2019-13045]. 2019-07-03 14:37:33 -04:00
iso-codes.scm
java-compression.scm
java-maths.scm
java.scm gnu: Add openjdk12. 2019-06-21 22:50:25 +02:00
javascript.scm
jemalloc.scm
jose.scm
jrnl.scm
julia.scm
kawa.scm
kde-frameworks.scm
kde-plasma.scm
kde.scm gnu: krita: Update to 4.2.2. 2019-06-28 09:34:25 +02:00
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linux.scm gnu: linux-libre: Update to 5.1.16. 2019-07-04 00:05:05 -04:00
lirc.scm
lisp.scm Revert "gnu: Add sbcl-cl-xmlspam." 2019-07-05 22:30:27 +02:00
llvm.scm gnu: libomp: Download over HTTPS. 2019-07-08 15:33:35 +02:00
logging.scm gnu: spdlog: Clarify license. 2019-06-20 05:38:58 +02:00
logo.scm gnu: Add qlogo. 2019-07-05 12:49:25 +05:30
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: Add python-keras. 2019-06-19 15:05:45 +02:00
magic-wormhole.scm
mail.scm gnu: alpine: Build reproducibly. 2019-07-02 23:59:41 +02:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mastodon.scm gnu: toot: Don't install the Makefile. 2019-06-25 19:09:51 +03:00
mate.scm gnu: mate-themes: Update to 3.22.20. 2019-06-23 00:22:29 +02:00
maths.scm gnu: octave-cli: Sort inputs alphabetically. 2019-07-02 15:04:56 +03:00
maven.scm
mc.scm gnu: mc: Update to 4.8.23. 2019-06-25 17:22:11 +02:00
mcrypt.scm
medical.scm
mes.scm
messaging.scm gnu: znc: Enable internationalisation. 2019-06-25 16:24:11 +02:00
microcom.scm
mingw.scm
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: MPD: Update to 0.21.11. 2019-07-03 16:24:50 -04:00
mpi.scm gnu: python-mpi4py: Update to 3.0.2. 2019-06-21 09:04:37 +02:00
mtools.scm
multiprecision.scm
music.scm gnu: lpd8editor: Update to 0.0.13. 2019-07-03 22:06:29 -04:00
musl.scm
nano.scm gnu: nano: Update to 4.3. 2019-06-19 17:50:44 +02:00
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: aircrack-ng: Update to 1.5.2. 2019-06-18 17:01:30 +02:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm
noweb.scm
nss.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
openldap.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: diffoscope: Update to 116. 2019-07-07 18:57:28 -07:00
parallel.scm gnu: Add python-slurm-magic. 2019-06-18 16:51:22 +02:00
password-utils.scm gnu: Add qtpass. 2019-07-04 12:31:44 +02:00
patchutils.scm gnu: patchwork: Update to 2.1.4. 2019-07-05 07:52:44 +01:00
pciutils.scm
pcre.scm
pdf.scm gnu: pdfpc: Update to 4.3.4. 2019-06-22 01:37:35 +02:00
pem.scm
perl-check.scm
perl-compression.scm
perl-web.scm
perl.scm gnu: Add Perl Clone::Choose. 2019-06-28 22:44:59 -05:00
perl6.scm
phabricator.scm
photo.scm gnu: libraw: Update to 0.19.3. 2019-07-06 18:44:15 +02:00
php.scm
pkg-config.scm
plotutils.scm
poedit.scm
polkit.scm
popt.scm
pretty-print.scm
printers.scm
profiling.scm
protobuf.scm
pth.scm
pulseaudio.scm gnu: Add pulseaudio-dlna. 2019-07-04 18:05:03 +02:00
pumpio.scm
pure.scm
pv.scm
python-check.scm gnu: Add python-pytest-virtualenv. 2019-06-26 16:24:58 +02:00
python-compression.scm gnu: Add python-zipp. 2019-06-26 16:24:58 +02:00
python-crypto.scm gnu: python-bcrypt: Update to 3.1.7. 2019-06-22 01:37:35 +02:00
python-web.scm gnu: Add python-slugify. 2019-07-07 15:48:19 +02:00
python-xyz.scm gnu: Add python-dbfread. 2019-07-07 15:48:20 +02:00
python.scm gnu: python2: Add 'cpe-name' property. 2019-06-18 21:02:42 +03:00
qt.scm
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
regex.scm gnu: re2: Update to 2019-07-01. 2019-07-02 17:18:54 +02:00
robotics.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: Remove duplicate 'ruby-crass' package. 2019-07-04 12:31:44 +02:00
rush.scm
rust.scm gnu: rust: use llvm@8 2019-06-28 18:31:51 -07:00
sagemath.scm gnu: Move ratpoints into "sagemath.scm" 2019-06-21 22:57:19 +02:00
samba.scm gnu: samba: Update to 4.10.5 [fixes CVE-2019-12435, CVE-2019-12436]. 2019-06-20 22:49:32 +02:00
sawfish.scm gnu: rep-gtk: Update to 0.90.8.3. 2019-06-27 12:22:04 +05:30
scanner.scm
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdcc.scm
sdl.scm
search.scm
security-token.scm
selinux.scm
serialization.scm gnu: jsoncpp: Update to 1.9.0. 2019-07-06 18:49:52 +02:00
serveez.scm
shells.scm
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
sphinx.scm gnu: Use HTTPS for sphinx-doc.org. 2019-06-20 22:49:31 +02:00
spice.scm
sqlite.scm
squirrel.scm
ssh.scm Revert "gnu: openssh: Don't create the PRIVSEP_PATH directory." 2019-06-27 00:21:16 +02:00
sssd.scm
stalonetray.scm
statistics.scm gnu: r-quantreg: Update to 5.41. 2019-06-29 01:34:45 +02:00
stb.scm
storage.scm
suckless.scm
swig.scm
sync.scm gnu: rclone: Update to 1.48.0. 2019-06-21 23:20:36 +02:00
syncthing.scm
syndication.scm
synergy.scm
task-management.scm
tbb.scm
tcl.scm gnu: Add go-github.com-nsf-gothic. 2019-06-22 17:11:27 +02:00
telephony.scm
terminals.scm
terraform.scm
tex.scm
texinfo.scm
text-editors.scm gnu: Add texmacs. 2019-06-26 18:23:02 +02:00
textutils.scm gnu: Add python-pandocfilters. 2019-06-19 22:01:53 +02:00
time.scm gnu: Add python-pytimeparse. 2019-07-07 15:48:19 +02:00
tls.scm gnu: mbedtls-apache: Update to 2.16.2. 2019-06-30 14:11:01 +02:00
tmux.scm
tor.scm
toys.scm
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm gnu: miniupnpc: Update to 2.1.20190625. 2019-06-30 14:11:02 +02:00
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm
video.scm gnu: youtube-dl-gui: Add .desktop file. 2019-07-02 23:13:21 +02:00
vim.scm
virtualization.scm gnu: libvirt: Update to 5.5.0 [security fixes]. 2019-07-02 23:59:41 +02:00
vpn.scm gnu: wireguard: Update to 0.0.20190702. 2019-07-03 13:38:29 +02:00
vulkan.scm
w3m.scm
wdiff.scm
web-browsers.scm
web.scm gnu: nginx: Update to 1.17.1. 2019-06-29 23:17:13 +02:00
webkit.scm gnu: WebKitGTK: Update to 2.24.3. 2019-07-02 17:27:13 +02:00
wget.scm
wicd.scm
wine.scm gnu: wine-staging: Update to 4.12.1. 2019-07-07 13:51:06 +02:00
wireservice.scm gnu: wireservice: New wireservice-package macro. 2019-07-08 13:05:55 +02:00
wm.scm gnu: i3blocks: Update to ec050e7. 2019-07-08 13:05:56 +02:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: xlockmore: Update to 5.57. 2019-07-02 23:59:41 +02:00
xfce.scm gnu: thunar-volman: Update to 0.9.3. 2019-07-03 00:26:08 +02:00
xfig.scm
xiph.scm
xml.scm gnu: perl-xml-sax: Update to 1.02. 2019-06-19 17:50:43 +02:00
xnee.scm
xorg.scm gnu: xcalc: Update to 1.1.0. 2019-06-25 23:52:05 +02:00
zile.scm
zwave.scm