guix/gnu/packages
Ricardo Wurmus 4a01e00a13
gnu: pigx-rnaseq: Update to 0.0.17.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.17.
[arguments]: Remove "use-latest-salmon" phase; add "set-timezone" phase.
[inputs]: Replace r-gprofiler with r-gprofiler2; add r-ggpubr and
python-deeptools.
[native-inputs]: Add tzdata.
2021-06-08 00:53:06 +02:00
..
aux-files
patches gnu: xpra: Update to 4.2. 2021-06-07 09:33:57 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: nnn: Remove marketing hyperbole. 2021-06-05 18:29:55 +02:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: giac: Update to 1.7.0-11. 2021-06-05 17:24:13 +02:00
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apr.scm
arcan.scm
aspell.scm gnu: ispell: Update to 3.4.04. 2021-06-05 18:29:55 +02:00
assembly.scm
astronomy.scm
attr.scm
audio.scm gnu: faudio: Update to 21.06. 2021-06-05 18:29:56 +02:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm
base.scm
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: r-sushi: Update to 1.30.0. 2021-06-05 09:12:58 +02:00
bioinformatics.scm gnu: pigx-rnaseq: Update to 0.0.17. 2021-06-08 00:53:06 +02:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm
bootstrap.scm
browser-extensions.scm
build-tools.scm
busybox.scm
c.scm
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm
cedille.scm
certs.scm
check.scm
chemistry.scm
chez.scm
chicken.scm
chromium.scm
ci.scm
cinnamon.scm
clojure.scm
cluster.scm gnu: Add libdqlite. 2021-06-05 23:39:29 +02:00
cmake.scm
cobol.scm
code.scm
commencement.scm
compression.scm
compton.scm
configuration-management.scm
conky.scm
connman.scm
convmv.scm
cook.scm
coq.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm
crates-graphics.scm gnu: Remove rust-rav1e. 2021-06-06 02:38:28 -04:00
crates-gtk.scm
crates-io.scm gnu: Add rust-bitreader-0.3. 2021-06-06 02:38:27 -04:00
cross-base.scm
crypto.scm
cryptsetup.scm
cups.scm
curl.scm
cvassistant.scm
cybersecurity.scm gnu: Add pwntools. 2021-06-06 23:12:17 +02:00
cyrus-sasl.scm
databases.scm
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm
dejagnu.scm
dhall.scm
dico.scm
dictionaries.scm
diffoscope.scm gnu: diffoscope: Update to 177. 2021-06-06 02:38:28 -04:00
digest.scm
direct-connect.scm
disk.scm gnu: gparted: Update to 1.3.0. 2021-06-05 23:39:29 +02:00
display-managers.scm
distributed.scm
django.scm
djvu.scm
dlang.scm
dns.scm
docbook.scm gnu: dblatex: Use patched texlive-amsfonts. 2021-06-05 09:26:14 +02:00
docker.scm
documentation.scm
drones.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm gnu: cozy: Update to 1.0.3. 2021-06-06 23:12:18 +02:00
ed.scm
education.scm
efi.scm
electronics.scm
elf.scm
elixir.scm
elm.scm
emacs-xyz.scm gnu: emacs-company-irony: Update to 1.1.1. 2021-06-06 09:06:40 +02:00
emacs.scm
embedded.scm
emulators.scm gnu: ppsspp: Update to 1.11.3-1.69fa207. 2021-06-06 02:38:29 -04:00
enchant.scm
engineering.scm gnu: poke: Update to 1.3. 2021-06-06 10:53:55 +03:00
enlightenment.scm
entr.scm
erlang.scm
esolangs.scm
fabric-management.scm
fcitx.scm
fcitx5.scm
figlet.scm
file-systems.scm
file.scm
finance.scm gnu: homebank: Update to 5.5.2. 2021-06-06 23:12:18 +02:00
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm
freeipmi.scm
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm
games.scm
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genealogy.scm
genimage.scm
geo.scm
gettext.scm
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm
glib.scm
gnome-xyz.scm
gnome.scm gnu: gtg: Update to 0.5. 2021-06-07 10:38:54 +03:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm
gnustep.scm
gnuzilla.scm gnu: icedove-wayland: Refactor as a wrapper around icedove. 2021-06-06 11:26:20 +02:00
gobby.scm
golang.scm
gperf.scm
gpodder.scm
gps.scm
graph.scm
graphics.scm
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm
guile-wm.scm
guile-xyz.scm
guile.scm
gv.scm
gxmessage.scm
hardware.scm
haskell-apps.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm
haskell.scm
heads.scm
hexedit.scm
hugs.scm
hunspell.scm
hurd.scm
hyperledger.scm
i2p.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm
image.scm gnu: libheif: Update to 1.12.0. 2021-06-06 23:12:18 +02:00
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibility 2021-06-05 11:21:11 -04:00
ipfs.scm
irc.scm gnu: srain: Update to 1.2.2. 2021-06-07 10:38:54 +03:00
iso-codes.scm
jami.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java.scm
javascript.scm
jemalloc.scm
jose.scm
jrnl.scm
julia-jll.scm
julia-xyz.scm
julia.scm
jupyter.scm
kawa.scm
kde-frameworks.scm
kde-internet.scm
kde-multimedia.scm
kde-pim.scm
kde-plasma.scm
kde-systemtools.scm
kde-utils.scm
kde.scm gnu: qca: Update to 2.3.3. 2021-06-05 18:29:55 +02:00
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm
linux.scm
lirc.scm
lisp-xyz.scm gnu: sbcl-fof: Update to 0.2.0. 2021-06-07 14:00:18 +02:00
lisp.scm
llvm.scm
logging.scm
logo.scm
loko.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm
magic-wormhole.scm
mail.scm gnu: isync: Update to 1.4.2. 2021-06-07 21:52:31 +02:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mastodon.scm
mate.scm
maths.scm
matrix.scm
maven-parent-pom.scm
maven.scm
mc.scm
mcrypt.scm
medical.scm
mercury.scm
mes.scm
messaging.scm gnu: dino: Update to 0.2.1 [fixes CVE-2021-33896]. 2021-06-07 16:51:38 -04:00
microcom.scm
mingw.scm
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: rosegarden: Update to 21.06. 2021-06-05 16:08:34 +02:00
musl.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: strongswan: Configure more sensible defaults. 2021-06-06 15:35:47 +02:00
nfs.scm
nickle.scm
nicotine.scm
nim.scm
ninja.scm
node-xyz.scm
node.scm
noweb.scm
nss.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: Add ocaml-ppx-cold. 2021-06-06 17:17:22 +02:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openpgp.scm
openstack.scm
orange.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix-build-coordinator: Update to 0-31.4a47417. 2021-06-07 10:35:42 +01:00
pantheon.scm
parallel.scm
pascal.scm
password-utils.scm
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm
pem.scm
pep.scm
perl-check.scm
perl-compression.scm
perl-maths.scm
perl-web.scm
perl.scm
perl6.scm
phabricator.scm
photo.scm
php.scm
piet.scm
pkg-config.scm
plotutils.scm gnu: asymptote: Use patched texlive-amsfonts. 2021-06-05 09:26:14 +02:00
poedit.scm
polkit.scm
popt.scm
presentation.scm
pretty-print.scm
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
python-build.scm
python-check.scm gnu: Add python-pytest-mp. 2021-06-06 17:50:33 +02:00
python-compression.scm
python-crypto.scm
python-science.scm
python-web.scm
python-xyz.scm gnu: python-pikepdf: Update to 2.12.2. 2021-06-07 23:29:52 +02:00
python.scm
qt.scm gnu: qtwebengine: Enable H.264 WebRTC encoding. 2021-06-07 16:51:35 -04:00
racket.scm
radio.scm gnu: sdrangel: Add SoapySDR support. 2021-06-06 09:46:04 +02:00
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
rednotebook.scm
regex.scm
robotics.scm
rpc.scm
rrdtool.scm
rsync.scm
ruby.scm
rush.scm
rust-apps.scm gnu: rust-cargo-c: Update to 0.8.1+cargo-0.53. 2021-06-06 02:38:27 -04:00
rust.scm
sagemath.scm
samba.scm
sawfish.scm
scanner.scm
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdl.scm
search.scm
security-token.scm gnu: Add nitrocli. 2021-06-05 22:17:50 +02:00
selinux.scm
sequoia.scm
serialization.scm gnu: cereal: Update to 1.3.0. 2021-06-07 16:50:33 +02:00
serveez.scm
shells.scm gnu: dash: Update to 0.5.11.4. 2021-06-06 20:51:21 +02:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
sphinx.scm
spice.scm
sqlite.scm
squirrel.scm
ssh.scm
sssd.scm
stalonetray.scm
statistics.scm
stb.scm
stenography.scm
storage.scm
suckless.scm
swig.scm
sync.scm
syncthing.scm
syndication.scm
synergy.scm
task-management.scm
task-runners.scm
tbb.scm
tcl.scm
telegram.scm
telephony.scm
terminals.scm
terraform.scm
tex.scm
texinfo.scm
text-editors.scm gnu: ghostwriter: Update to 2.0.1. 2021-06-07 18:20:07 -04:00
textutils.scm
time.scm
tls.scm gnu: gnutls@3.6.16: Fix cross-compilation. 2021-06-06 23:12:18 +02:00
tmux.scm
tor.scm
toys.scm
tryton.scm
tv.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: git: Update to 2.32.0. 2021-06-06 18:34:12 +02:00
video.scm gnu: youtube-dl: Update to 2021.06.06. 2021-06-07 21:52:37 +02:00
vim.scm
virtualization.scm gnu: Add lxcfs. 2021-06-05 23:39:29 +02:00
visidata.scm
vlang.scm
vnc.scm
vpn.scm
vulkan.scm
w3m.scm
wdiff.scm
web-browsers.scm
web.scm
webkit.scm
wget.scm gnu: wgetpaste: Update to 2.32. 2021-06-05 19:14:15 +02:00
wicd.scm
wine.scm
wireservice.scm
wm.scm
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm
xfce.scm
xfig.scm
xiph.scm
xml.scm
xnee.scm
xorg.scm gnu: xf86-video-vesa: Update to 2.5.0. 2021-06-07 10:38:54 +03:00
zile.scm
zwave.scm