guix/gnu/packages
Ricardo Wurmus 649e9b3b47 gnu: python-pysam: Move cython and setuptools to native inputs.
* gnu/packages/bioinformatics.scm (python-pysam)[inputs]: Move
"python-cython" and "python-setuptools" from here...
[native-inputs]: ... to here.
2016-03-03 13:47:19 +01:00
..
bootstrap
patches gnu: Add procmail. 2016-03-02 20:44:18 -05:00
abduco.scm gnu: abduco: Update to 0.5. 2016-02-21 02:04:10 -05:00
abiword.scm
acct.scm
acl.scm
admin.scm gnu: dmd: Update URI of dmd-user-group.patch. 2016-02-20 18:41:34 -05:00
adns.scm gnu: c-ares: Update to 1.11.0. 2016-02-22 10:43:17 +02:00
aidc.scm gnu: qrencode: Update to 3.4.4. 2016-02-16 19:28:00 +02:00
algebra.scm gnu: pari-gp: Build documentation. 2016-02-16 17:11:28 +01:00
animation.scm
apl.scm
apr.scm
asciidoc.scm
aspell.scm
attr.scm
audacity.scm
audio.scm gnu: Add pyliblo. 2016-02-27 12:27:21 +01:00
augeas.scm gnu: Add Augeas. 2016-02-16 14:41:25 +01:00
autogen.scm
autotools.scm
avahi.scm
avr.scm
backup.scm
base.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
bash.scm
bdw-gc.scm
bioinformatics.scm gnu: python-pysam: Move cython and setuptools to native inputs. 2016-03-03 13:47:19 +01:00
bison.scm
bittorrent.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
boost.scm
bootstrap.scm
busybox.scm
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm
certs.scm
check.scm gnu: Add cppcheck. 2016-03-02 15:17:56 +01:00
ci.scm
cmake.scm
code.scm
commencement.scm
compression.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
conkeror.scm
conky.scm
cook.scm
cpio.scm gnu: cpio: Add fix for CVE-2016-2037. 2016-02-19 18:04:15 -05:00
cppi.scm
cross-base.scm
crypto.scm
cryptsetup.scm
cups.scm
curl.scm gnu: curl: Use updated libssh2 [fixes CVE-2016-7087]. 2016-02-29 20:09:29 -05:00
cyrus-sasl.scm
databases.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
datamash.scm
datastructures.scm gnu: Add gdsl. 2016-03-01 10:30:04 +01:00
dav.scm gnu: vdirsyncer: Update to 0.9.0. 2016-02-15 18:48:36 -05:00
dc.scm
debug.scm
dejagnu.scm
dico.scm
dictionaries.scm
disk.scm
djvu.scm
dns.scm
docbook.scm
docker.scm gnu: Don't use python-enum34 when building with python-3.4. 2016-02-21 02:46:23 -05:00
doxygen.scm
dunst.scm
dvtm.scm gnu: dvtm: Update to 0.15. 2016-02-21 02:04:59 -05:00
ebook.scm
ed.scm
elf.scm
emacs.scm gnu: Add emacs-god-mode. 2016-02-27 13:50:18 +01:00
enchant.scm
engineering.scm download: Add 'url-fetch/tarbomb'. 2016-02-22 00:36:24 +01:00
enlightenment.scm
fcitx.scm
feh.scm
figlet.scm
file.scm
finance.scm
firmware.scm
fish.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
fontutils.scm gnu: graphite2: Replace with 1.3.6 [unspecified security fixes]. 2016-03-02 15:12:18 -05:00
freedesktop.scm gnu: libqmi: Update to 1.12.8. 2016-02-28 13:42:34 +02:00
freeipmi.scm
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm gnu: tiled: Use 'modify-phases'. 2016-03-01 14:55:55 +02:00
games.scm gnu: Add desmume. 2016-02-29 22:04:53 -05:00
gawk.scm
gcal.scm
gcc.scm gnu: gccgo: Update to 4.9. 2016-02-18 20:52:02 +02:00
gd.scm
gdb.scm gnu: gdb: Update to 7.11. 2016-02-24 20:52:12 +02:00
geeqie.scm
gettext.scm
ghostscript.scm Update all sources from freedesktop.org to use https 2016-02-21 21:11:49 +01:00
gimp.scm
gkrellm.scm
gl.scm gnu: mesa: Update to 11.0.9. 2016-02-24 11:49:57 -05:00
glib.scm Update all sources from freedesktop.org to use https 2016-02-21 21:11:49 +01:00
gnome.scm gnu: libwnck: Rename variable for GTK+ 2 variant. 2016-02-28 15:59:56 +01:00
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
gnupg.scm
gnustep.scm
gnuzilla.scm gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes]. 2016-03-02 15:13:15 -05:00
gperf.scm
gprolog.scm
gps.scm gnu: gpsbabel: Use 'modify-phases'. 2016-02-16 12:13:01 +02:00
graphics.scm gnu: ilmbase: Add patch to fix build on i686. 2016-03-01 19:08:31 -05:00
graphviz.scm
groff.scm
grub.scm
grue-hunter.scm
gsasl.scm
gstreamer.scm gnu: gst-plugins-base: Use 'modify-phases'. 2016-02-24 11:49:57 -05:00
gtk.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
guile-wm.scm
guile.scm gnu: guile-for-guile-emacs: Use guile-2.0 search paths. 2016-02-29 07:10:40 +01:00
gv.scm
gxmessage.scm
haskell.scm
hugs.scm
hurd.scm
ibus.scm
icu4c.scm gnu: icu4c: Fetch from sourceforge. 2016-02-21 21:21:09 +01:00
idutils.scm
image.scm
imagemagick.scm
indent.scm
inklingreader.scm
inkscape.scm
irc.scm gnu: weechat: Move to irc.scm. 2016-03-01 11:09:32 +02:00
iso-codes.scm
java.scm
jemalloc.scm
jrnl.scm
julia.scm
kde-frameworks.scm gnu: Add oxygen-icons. 2016-03-01 11:09:32 +02:00
kde.scm gnu: Add snorenotify. 2016-03-01 11:09:32 +02:00
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
ldc.scm gnu: Add rdmd. 2016-02-23 01:27:19 -05:00
lego.scm
less.scm
lesstif.scm
libcanberra.scm Update all sources from freedesktop.org to use https 2016-02-21 21:11:49 +01:00
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libupnp.scm
libusb.scm
lightning.scm
links.scm
linux-libre-4.1-i686.conf
linux-libre-4.1-x86_64.conf
linux-libre-i686.conf
linux-libre-x86_64.conf
linux.scm gnu: btrfs-progs: Update to 4.4.1. 2016-02-27 22:39:51 +02:00
lirc.scm
lisp.scm
llvm.scm
lout.scm
lsh.scm gnu: lsh: lshd now supports X11 forwarding. 2016-02-24 13:11:50 +01:00
lsof.scm
lua.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
lxde.scm
lxqt.scm
lynx.scm
m4.scm
machine-learning.scm
mail.scm gnu: Add procmail. 2016-03-02 20:44:18 -05:00
make-bootstrap.scm
man.scm
markdown.scm
mate.scm gnu: Add mate-menus. 2016-02-17 13:39:41 +02:00
maths.scm gnu: glpk: Update to 4.58. 2016-02-18 15:35:28 +02:00
mc.scm
mcrypt.scm
messaging.scm gnu: bitlbee: Update to 3.4.1. 2016-02-27 21:10:56 -05:00
mg.scm
miscfiles.scm
mit-krb5.scm
moe.scm gnu: moe: Update to 1.8. 2016-02-17 16:25:46 +02:00
moreutils.scm
mp3.scm
mpd.scm gnu: mpd: Update to 0.19.12. 2016-02-22 20:16:25 -05:00
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: Add gtklick. 2016-02-27 12:27:21 +01:00
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm
ninja.scm
node.scm
noweb.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm
ocr.scm
onc-rpc.scm
openbox.scm
openldap.scm
openstack.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
orpheus.scm
ots.scm
owncloud.scm
package-management.scm gnu: diffoscope: Update to 49. 2016-02-25 17:06:25 -05:00
parallel.scm gnu: parallel: Update to 20160222. 2016-03-01 15:15:38 -05:00
password-utils.scm gnu: Add password-store. 2016-03-02 14:18:51 -05:00
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm Update all sources from freedesktop.org to use https 2016-02-21 21:11:49 +01:00
pem.scm
perl.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
photo.scm
pkg-config.scm gnu: pkg-config: Add non-HTTPS alternate URL. 2016-02-22 22:11:37 +01:00
plotutils.scm
polkit.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
popt.scm
pretty-print.scm
protobuf.scm
pth.scm
pulseaudio.scm gnu: pulseaudio: Update to 8.0. 2016-02-24 11:49:57 -05:00
pumpio.scm gnu: Remove KDE 4. 2016-02-22 21:30:56 +01:00
pv.scm
python.scm gnu: python-pysam, python2-pysam: Move to bioinformatics.scm. 2016-03-03 13:46:26 +01:00
qemu.scm gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197. 2016-02-22 10:26:22 -05:00
qt.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
ragel.scm
ratpoison.scm
rc.scm
rdesktop.scm
rdf.scm gnu: Remove KDE 4. 2016-02-22 21:30:56 +01:00
readline.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
rush.scm
samba.scm
sawfish.scm
scanner.scm
scheme.scm download: Add 'url-fetch/tarbomb'. 2016-02-22 00:36:24 +01:00
screen.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
scribus.scm gnu: scribus: Update to 1.5.1. 2016-02-27 16:34:20 +01:00
sdl.scm
search.scm
serialization.scm
serveez.scm
shishi.scm
skarnet.scm
skribilo.scm
slang.scm
slim.scm
smalltalk.scm
ssh.scm gnu: openssh: Update to 7.2p1. 2016-03-01 16:32:41 -05:00
stalonetray.scm
statistics.scm gnu: r-ggplot2: Update to 2.0.0. 2016-03-01 19:47:24 +02:00
suckless.scm
swig.scm
sxiv.scm
synergy.scm
task-management.scm
tbb.scm
tcl.scm
tcsh.scm
telephony.scm
terminals.scm
texinfo.scm
texlive.scm gnu: Add texlive-minimal. 2016-02-16 16:44:36 +01:00
textutils.scm
time.scm
tls.scm gnu: openssl: Enable ssl2 at build time to ensure ABI compatible graft. 2016-03-02 01:58:42 -05:00
tmux.scm
tor.scm
tre.scm
tv.scm
unrtf.scm
upnp.scm
uucp.scm
valgrind.scm
version-control.scm gnu: git: Install symlinks instead of hard links. 2016-02-28 16:41:53 +01:00
video.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
vim.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
vpn.scm
vtk.scm
w3m.scm
wdiff.scm
web.scm
webkit.scm
wget.scm
wicd.scm
wine.scm gnu: wine: Update to 1.9.4. 2016-02-20 22:38:33 +01:00
wm.scm
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: arandr: Add "xrandr" to inputs. 2016-02-27 16:25:26 +01:00
xfce.scm gnu: xfce: Don't wrap 'startxfce4'. 2016-03-02 08:32:47 +08:00
xfig.scm
xiph.scm
xml.scm
xnee.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00
xorg.scm gnu: xrandr: Update to 1.5.0. 2016-02-28 14:13:30 +02:00
yasm.scm gnu: yasm: Update to 1.3.0. 2016-02-18 11:47:19 +02:00
yubico.scm gnu: ykclient: Update to 2.15. 2016-02-18 11:47:19 +02:00
zile.scm
zip.scm
zsh.scm gnu: Fix misplaced commas (unquote). 2016-02-27 08:49:26 -05:00