guix/gnu/packages
Ricardo Wurmus 07c8b558e3
gnu: Add bwa-meth.
* gnu/packages/bioinformatics.scm (bwa-meth): New variable.
2019-03-15 11:36:56 +01:00
..
aux-files gnu: linux-libre: Update to 5.0. 2019-03-06 17:51:55 -05:00
bootstrap
patches gnu: pugixml: Build as shared library. 2019-03-10 21:44:25 +01:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: inxi-minimal: Update to 3.0.32-1. 2019-03-14 21:15:18 +01:00
adns.scm
agda.scm
aidc.scm
algebra.scm
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apr.scm
arcan.scm gnu: Add arcan-sdl. 2019-03-04 15:22:59 +01:00
aspell.scm gnu: aspell-dict-it: Update to 2.4-20070901-0. 2019-03-12 15:26:20 +01:00
assembly.scm
astronomy.scm
attr.scm
audio.scm gnu: aubio: Update to 0.4.9. 2019-03-14 19:47:29 +01:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm
base.scm
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm gnu: Add multitime. 2019-03-06 21:55:14 +01:00
bioconductor.scm gnu: Add r-ioniser. 2019-03-15 10:58:05 +01:00
bioinformatics.scm gnu: Add bwa-meth. 2019-03-15 11:36:56 +01:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm gnu: Update dtc to 1.5.0. 2019-03-14 11:02:40 +01:00
bootstrap.scm
build-tools.scm
busybox.scm
c.scm
calcurse.scm gnu: calcurse: Update to 4.4.0. 2019-03-04 19:07:10 +01:00
calendar.scm
ccache.scm
cdrom.scm
certs.scm
check.scm gnu: go-gopkg.in-check.v1: Update to 0.0.0-1.788fd78. 2019-03-14 15:34:29 -04:00
chemistry.scm
chez.scm
chromium.scm gnu: ungoogled-chromium: Update to 72.0.3626.121-0.a80839c [fixes CVE-2019-5786]. 2019-03-02 22:21:16 +01:00
ci.scm
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm gnu: lcov: Update to 1.14. 2019-03-06 16:48:39 +01:00
commencement.scm
compression.scm gnu: libzip: Update to 1.5.2. 2019-03-14 14:44:00 +01:00
compton.scm
conky.scm
connman.scm
cook.scm
coq.scm gnu: coq-coquelicot: Update to 3.0.2. 2019-03-04 20:58:57 +01:00
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: Add r-rematch2. 2019-03-14 10:54:49 +01:00
cross-base.scm
crypto.scm
cryptsetup.scm
cups.scm
curl.scm Remove traces of "GuixSD". 2019-03-13 23:12:43 +01:00
cyrus-sasl.scm
databases.scm build-system/go: Build with a filesystem union of Go dependencies. 2019-03-14 15:34:26 -04:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm
dejagnu.scm
dico.scm
dictionaries.scm
digest.scm
direct-connect.scm
disk.scm
display-managers.scm
django.scm gnu: python-django-appconf: Update to 1.0.3. 2019-03-14 21:15:17 +01:00
djvu.scm
dlang.scm
dns.scm gnu: unbound: Update to 1.9.1. 2019-03-14 21:15:19 +01:00
docbook.scm
docker.scm gnu: containerd: Update to 1.2.5. 2019-03-14 23:18:49 +01:00
documentation.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm gnu: gcompris-qt: Update to 0.96. 2019-03-12 02:22:35 +01:00
efi.scm
electronics.scm gnu: sigrok-firmware-fx2lafw: Update to 0.1.6. 2019-03-14 22:09:37 +01:00
elf.scm
elixir.scm
emacs-xyz.scm gnu: emacs-helm-slime: Update to 0.3.0. 2019-03-15 10:14:25 +01:00
emacs.scm Remove traces of "GuixSD". 2019-03-13 23:12:43 +01:00
embedded.scm gnu: fc-host-tools: Update to 10. 2019-03-08 19:33:04 +01:00
emulators.scm gnu: pugixml is a regular input. 2019-03-10 21:44:25 +01:00
enchant.scm
engineering.scm gnu: meep: Update to 1.8.0. 2019-03-14 20:49:02 -04:00
enlightenment.scm
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm
file.scm
finance.scm gnu: electron-cash: Update to 3.3.6. 2019-03-06 16:06:26 -05:00
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: font-terminus: Install X11 8-bit code pages. 2019-03-14 22:09:19 +01:00
fontutils.scm
forth.scm
fpga.scm gnu: gtkwave: Update to 3.3.99. 2019-03-12 02:22:35 +01:00
freedesktop.scm gnu: Add waylandpp. 2019-03-14 14:43:59 +01:00
freeipmi.scm
fribidi.scm
ftp.scm gnu: FileZilla: Update to 3.41.1. 2019-03-10 21:44:25 +01:00
fvwm.scm
game-development.scm
games.scm gnu: freedink-engine: Update to 109.6. 2019-03-12 02:22:37 +01:00
gawk.scm
gcal.scm
gcc.scm
gd.scm gnu: perl-gd-securityimage: Update to 1.75. 2019-03-14 23:51:49 +01:00
gdb.scm
genimage.scm gnu: Move libconfuse to (gnu packages textutils). 2019-03-14 19:47:28 +01:00
geo.scm gnu: protozero: Update to 1.6.7. 2019-03-15 00:41:02 +01:00
gettext.scm
ghostscript.scm
gimp.scm gnu: gegl: Update to 0.4.14. 2019-03-05 00:05:13 +01:00
gkrellm.scm
gl.scm gnu: virtualgl: Update to 2.6.1. 2019-03-05 00:05:13 +01:00
glib.scm gnu: perl-glib: Update to 1.329. 2019-03-14 23:51:49 +01:00
gnome.scm gnu: gjs: Use the test-only Xorg variant for tests. 2019-03-15 01:11:21 +01:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm gnu: libmicrohttpd: Enable parallel tests. 2019-03-07 22:00:53 +02:00
gnupg.scm
gnustep.scm
gnuzilla.scm
gobby.scm
golang.scm gnu: Remove duplicate go-github-com-kr-text. 2019-03-14 19:10:17 -04:00
gperf.scm
gprolog.scm
gps.scm
graph.scm gnu: r-igraph: Update to 1.2.4. 2019-03-07 23:52:39 +01:00
graphics.scm
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm
guile-wm.scm
guile-xyz.scm gnu: Add python-on-guile. 2019-03-13 20:43:35 +01:00
guile.scm Revert "packages: 'package-input-rewriting' can take a promise." 2019-03-12 23:51:32 +01:00
gv.scm
gxmessage.scm
ham-radio.scm
hardware.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell.scm
hexedit.scm
hugs.scm
hurd.scm
hyperledger.scm gnu: hyperledger-fabric: Fix description, set supported system and parallel build. 2019-03-09 12:30:24 +01:00
ibus.scm gnu: ibus: Update Unicode data to 12.0.0. 2019-03-10 13:37:18 +01:00
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm
image.scm gnu: jasper: Update to 2.0.16. 2019-03-14 14:44:01 +01:00
imagemagick.scm
inklingreader.scm
inkscape.scm
ipfs.scm gnu: Remove the various Go union meta-packages. 2019-03-14 15:34:26 -04:00
irc.scm
iso-codes.scm
java-compression.scm
java-maths.scm gnu: Add java-jblas. 2019-03-04 17:14:15 +01:00
java.scm gnu: Add java-eclipse-jdt-compiler-apt. 2019-03-08 23:18:56 +01:00
javascript.scm
jemalloc.scm
jose.scm
jrnl.scm
julia.scm Remove traces of "GuixSD". 2019-03-13 23:12:43 +01:00
kde-frameworks.scm Remove traces of "GuixSD". 2019-03-13 23:12:43 +01:00
kde-plasma.scm
kde.scm
kerberos.scm
key-mon.scm
kodi.scm gnu: Kodi: Add Wayland variant. 2019-03-14 14:44:00 +01:00
language.scm
ld-wrapper.in
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm gnu: perl-anyevent: Update to 7.15. 2019-03-12 15:26:21 +01:00
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linux.scm gnu: libseccomp: Update to 2.4.0. 2019-03-15 01:11:21 +01:00
lirc.scm
lisp.scm
llvm.scm gnu: python-llvmlite: Update to 0.27.1. 2019-03-13 20:43:55 +01:00
logging.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm gnu: libfm: Update to 1.3.1. 2019-03-14 16:47:17 +01:00
lxqt.scm gnu: lxqt-about: Make it more reproducible. 2019-03-14 16:47:19 +01:00
m4.scm
machine-learning.scm gnu: Add gst-kaldi-nnet2-online. 2019-03-14 23:32:51 +01:00
magic-wormhole.scm
mail.scm gnu: notmuch: Update to 0.28.3. 2019-03-10 18:30:51 +01:00
make-bootstrap.scm
man.scm gnu: man-pages: Update to 5.00. 2019-03-08 01:35:42 +01:00
markup.scm
marst.scm
mastodon.scm
mate.scm
maths.scm gnu: c-graph: Update to 2.0.1. 2019-03-07 22:00:52 +02:00
maven.scm
mc.scm
mcrypt.scm
medical.scm
mes.scm
messaging.scm
microcom.scm
mingw.scm
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: MPD: Update to 0.21.5. 2019-03-05 21:10:54 -05:00
mpi.scm
mtools.scm
multiprecision.scm
music.scm build-system/go: Build with a filesystem union of Go dependencies. 2019-03-14 15:34:26 -04:00
musl.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: Move libconfuse to (gnu packages textutils). 2019-03-14 19:47:28 +01:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm
noweb.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
openldap.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm Remove traces of "GuixSD". 2019-03-13 23:12:43 +01:00
parallel.scm
password-utils.scm
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm
pem.scm
perl-check.scm
perl-compression.scm
perl-web.scm
perl.scm gnu: Add perl-conf-libconfig. 2019-03-14 19:47:27 +01:00
phabricator.scm
photo.scm gnu: perl-image-exiftool: Update to 11.31. 2019-03-11 13:25:12 +01:00
php.scm gnu: php: Update to 7.3.3. 2019-03-07 21:18:30 +01:00
pkg-config.scm
plotutils.scm
polkit.scm Remove traces of "GuixSD". 2019-03-13 23:12:43 +01:00
popt.scm
pretty-print.scm
printers.scm
profiling.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
pv.scm
python-check.scm
python-compression.scm
python-crypto.scm gnu: python-cryptography: Update to 2.6.1. 2019-03-01 17:31:19 +01:00
python-web.scm gnu: python2-openid: Fix package. 2019-03-04 21:52:41 +01:00
python-xyz.scm gnu: Add python-toolshed. 2019-03-15 11:36:38 +01:00
python.scm
qt.scm
ragel.scm
rails.scm gnu: Add ruby-with-advisory-lock. 2019-03-04 20:33:20 +00:00
ratpoison.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
regex.scm gnu: re2: Update to 2019-03-01. 2019-03-01 17:31:19 +01:00
robotics.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: Add mruby. 2019-03-08 00:07:45 +01:00
rush.scm
rust.scm gnu: rust: Update to 1.31.1. 2019-03-05 13:43:09 +01:00
sagemath.scm
samba.scm gnu: samba: Update to 4.9.5. 2019-03-14 14:44:01 +01:00
sawfish.scm
scanner.scm gnu: Import (gnu packages image) in (gnu packages scanner). 2019-03-10 17:12:16 +01:00
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdcc.scm
sdl.scm gnu: sdl2: Add KMSDRM video backend. 2019-03-01 20:08:38 +01:00
search.scm gnu: xapian: Update to 1.4.11. 2019-03-10 18:30:51 +01:00
security-token.scm
selinux.scm
serialization.scm
serveez.scm
shells.scm gnu: fish: Update to 3.0.2. 2019-03-14 11:01:11 +01:00
shellutils.scm build-system/go: Build with a filesystem union of Go dependencies. 2019-03-14 15:34:26 -04:00
simh.scm
simulation.scm
skarnet.scm gnu: s6-linux-utils: Update to 2.5.0.1. 2019-03-11 13:25:15 +01:00
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
spice.scm
sqlite.scm
ssh.scm gnu: libssh: Update to 0.8.7. 2019-03-01 17:31:20 +01:00
sssd.scm
stalonetray.scm
statistics.scm gnu: r-with-tests: Update to 3.5.3. 2019-03-11 15:25:27 +01:00
stb.scm
storage.scm
suckless.scm
swig.scm
sync.scm
syncthing.scm gnu: Syncthing: Stop using bundled dependencies. 2019-03-14 15:34:31 -04:00
syndication.scm
synergy.scm
task-management.scm
tbb.scm
tcl.scm
telephony.scm
terminals.scm gnu: Move libconfuse to (gnu packages textutils). 2019-03-14 19:47:28 +01:00
terraform.scm
tex.scm Remove traces of "GuixSD". 2019-03-13 23:12:43 +01:00
texinfo.scm
text-editors.scm
textutils.scm gnu: Move libconfuse to (gnu packages textutils). 2019-03-14 19:47:28 +01:00
time.scm
tls.scm gnu: python-acme, certbot: Update to 0.32.0. 2019-03-11 02:08:04 +01:00
tmux.scm gnu: Add tmux-xpanes. 2019-03-12 22:41:31 +03:00
tor.scm
toys.scm
tryton.scm
tv.scm
uml.scm gnu: plantuml: Update to 1.2019.2. 2019-03-06 00:15:27 +01:00
unrtf.scm
upnp.scm
uucp.scm
valgrind.scm gnu: valgrind: Add download mirror. 2019-03-06 16:30:48 +01:00
version-control.scm
video.scm gnu: mkvtoolnix: Install GUI to separate output. 2019-03-15 09:19:00 +01:00
vim.scm gnu: neovim: Let build phase return #T. 2019-03-07 13:39:45 +01:00
virtualization.scm gnu: lxc: Fix documentation directory. 2019-03-06 00:15:26 +01:00
vpn.scm gnu: wireguard: Update to 0.0.20190227. 2019-03-07 12:23:43 +01:00
vulkan.scm gnu: shaderc: Update to 2018.0. 2019-03-06 09:26:50 +01:00
w3m.scm gnu: w3m: Update to 0.5.3+git20190105. 2019-03-13 20:06:15 -04:00
wdiff.scm
web-browsers.scm gnu: WebKitGTK: Update to 2.24.0. 2019-03-14 14:44:00 +01:00
web.scm gnu: rapidjson: Update home page. 2019-03-14 14:44:01 +01:00
webkit.scm gnu: WebKitGTK: Update to 2.24.0. 2019-03-14 14:44:00 +01:00
wget.scm gnu: wget2: Update to 1.99.1. 2019-03-05 17:46:46 +02:00
wicd.scm
wine.scm gnu: wine-staging: Add faudio support. 2019-03-03 11:01:51 +01:00
wm.scm gnu: Move libconfuse to (gnu packages textutils). 2019-03-14 19:47:28 +01:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: Add autorandr. 2019-03-07 22:23:38 +01:00
xfce.scm
xfig.scm
xiph.scm
xml.scm gnu: pugixml: Build as shared library. 2019-03-10 21:44:25 +01:00
xnee.scm
xorg.scm gnu: xf86-video-ati: Update to 19.0.0. 2019-03-11 02:08:01 +01:00
zile.scm