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100539 commits

Author SHA1 Message Date
Maxime Devos de29a26008
guile-fibers: Backport the ‘epoll instance is dead’ bugfix.
This fixes some indeterministic test failures for gnunet-scheme observed while
developing gnunet-scheme.  The following checks were made:

All dependents compile for x86_64:

$ ./pre-inst-env guix build shepherd gnunet-scheme guix-build-coordinator nar-herder guix-data-service guile-fibers --system=x86_64-linux

Everything except guix-build-coordinator (which depends on the
non-cross-compilable sqitch) cross-compile from x86_64 to aarch64-linux-gnu:

$ ./pre-inst-env guix build shepherd gnunet-scheme nar-herder  guile-fibers --system=x86_64-linux --target=aarch64-linux-gnu

I tried testing for reproducibility but the check phase took to long.
However, you can compare the hash you get against the hash I got:

$ ./pre-inst-env guix hash --serializer=nar $(./pre-inst-env guix build guile-fibers --no-grafts --system=x86_64-linux) 0qsaqx27b6q2s22h7y93417ijpkwl6gc1fhhck8aha6bvmawk5h0

I tried an emulated build for another architecture, but there the tests took
overly long.

There were no lint warnings for guile-fibers.

* gnu/packages/patches/guile-fibers-epoll-instance-is-dead.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register the patch.
* gnu/packages/guile-xyz.scm (guile-fibers)[source]{patches}: Use the patch.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 15:51:27 +02:00
Mathieu Othacehe 3084fc28fd
Revert "gnu: python-lxml: Update to 4.6.5."
This reverts commit 2365e8435a as it triggers
>15k rebuilds: https://ci.guix.gnu.org/eval/543158.
2022-08-15 15:45:46 +02:00
Maximilian Heisinger 9ddd37d6ab
gnu: Add kissat.
* gnu/packages/maths.scm (kissat): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-08-15 15:15:11 +02:00
Danny Milosavljevic 2365e8435a
gnu: python-lxml: Update to 4.6.5.
* gnu/packages/xml.scm (python-lxml): Update to 4.6.5.
2022-08-15 14:48:41 +02:00
Maxim Cournoyer d8537c68d0
gnu: Add python-robotframework-sshtunnellibrary.
* gnu/packages/python-xyz.scm (python-robotframework-sshtunnellibrary): New variable.
2022-08-15 08:30:14 -04:00
Maxim Cournoyer 21f1a47097
gnu: Add python-sshtunnel.
* gnu/packages/python-xyz.scm (python-sshtunnel): New variable.
2022-08-15 08:30:14 -04:00
Mathieu Othacehe 0e53328a8a
gnu: torsocks: Wrap lines.
* gnu/packages/tor.scm (torsocks)[source, arguments]: Wrap long lines
and remove a trailing #t.
2022-08-15 11:21:22 +02:00
Jim Newsome ae549cf48f
gnu: torsocks: Update to 2.4.0.
* gnu/packages/tor.scm (torsocks): Update to 2.4.0.
[native-inputs]: Add autoconf, automake, libtool because torsocks releases
no longer pre-run autogen.sh.
[synopsis, description]: Clarify that applications do not need to be
socks-aware to be used with torsocks.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 11:20:28 +02:00
Mathieu Othacehe 6b2d29a6f5
Revert "gnu: python-lsp-server: Update to 1.5.0."
This reverts commit 07f807f12c because it
requires a python-pluggy update which seems to cause some issues.
2022-08-15 11:08:05 +02:00
Ricardo Wurmus 2e88164023
gnu: r-tweenr: Build reproducibly.
* gnu/packages/cran.scm (r-tweenr)[arguments]: Add phase 'build-reproducibly
to avoid embedding random time difference.
2022-08-15 11:01:35 +02:00
Nicolas Goaziou f6709ee234
gnu: emacs-org-re-reveal: Update to 3.15.0.
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.15.0.
2022-08-15 10:32:18 +02:00
Nicolas Goaziou 82fbb54207
gnu: asymptote: Update to 2.82.
* gnu/packages/plotutils.scm (asymptote): Update to 2.82.
2022-08-15 10:29:16 +02:00
Michael Rohleder a751d90c88
gnu: tumbler: Update to 4.16.1.
* gnu/packages/xfce.scm (tumbler): Update to 4.16.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 10:22:38 +02:00
Michael Rohleder 81d3bc3c8b
gnu: xfce4-screenshooter: Update to 1.9.11.
* gnu/packages/xfce.scm (xfce4-screenshooter): Update to 1.9.11.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 10:22:38 +02:00
Ekaitz Zarraga eb38d49b04
gnu: rgbds: Update to 0.5.2.
* gnu/packages/assembly.scm (rgbds): Update to 0.5.2.
[arguments]: Remove a trailing #t.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 10:22:38 +02:00
Olivier Dion c53a5e7dc3
gnu: lttng-tools: Update to 2.13.7.
* gnu/packages/instrumentation.scm (lttng-tools): Update to 2.13.7.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 10:22:38 +02:00
Olivier Dion eca0227239
gnu: lttng-ust: Update to 2.13.3.
* gnu/packages/instrumentation.scm (lttng-ust): Update to 2.13.3.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 10:22:38 +02:00
Olivier Dion 9641e64b43
gnu: Add lttng-modules.
* gnu/packages/instrumentation.scm (lttng-modules): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 10:22:38 +02:00
Nicolas Graves via Guix-patches via 07f807f12c
gnu: python-lsp-server: Update to 1.5.0.
* gnu/packages/python-xyz.scm (python-lsp-server): Update to 1.5.0.
   [arguments]{set-HOME}: Remove this phase because tests do not require it
   anymore.
   {check}: Do not replace it as test_pyqt_completion is not longer failing.
   [propagated-inputs]: Remove python-future.
   [native-inputs]: Remove python-mock, python-versioneer and add
   python-whatthepatch.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 10:22:38 +02:00
Nicolas Graves via Guix-patches via 18ae404690
gnu: Add python-whatthepatch.
* gnu/packages/python-web.scm (python-whatthepatch): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-15 09:45:31 +02:00
Zhu Zihao 8fce5f0f0f
gnu: guile-machine-code: Update to 2.2.0.
* gnu/packages/guile-xyz.scm (guile-machine-code): Update to 2.2.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-15 13:54:15 +08:00
Zhu Zihao ae5ea1ec1c
gnu: guile-laesare: Use source from Gitlab.
* gnu/packages/guile-xyz.scm (guile-laesare)
[source]: Use source from Gitlab.
[home-page]: Use source from Gitlab.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-15 13:54:15 +08:00
Zhu Zihao 6a06ddd247
gnu: guile-machine-code: Use source from Gitlab.
* gnu/packages/guile-xyz.scm (guile-machine-code)
[source]: Use source from Gitlab.
[home-page]: Use source from Gitlab.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-15 13:54:15 +08:00
Zhu Zihao 89cf75b8c6
gnu: guile-struct-pack: Use source from Gitlab.
* gnu/packages/guile-xyz.scm (guile-struct-pack)
[source]: Use source from Gitlab. Replace missing git tag with commit.
[home-page]: Use source from Gitlab.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-15 13:54:15 +08:00
Zhu Zihao 5c6b020c73
gnu: guile-packrat: Use source from Gitlab.
* gnu/packages/guile-xyz.scm (guile-packrat)[home-page]: Use source from
Gitlab.
[source]: Replace missing git tag with commit.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-15 13:54:11 +08:00
Zhu Zihao f0694d4e01
gnu: guile-hashing: Use source from Gitlab.
* gnu/packages/guile-xyz.scm (guile-hashing)[home-page]: Use source from
Gitlab.
[source]: Replace missing git tag with commit.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-15 13:53:11 +08:00
jgart 94dc157ae4
gnu: Add python-nanoid.
* gnu/packages/python-xyz.scm (python-nanoid): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-15 13:42:21 +08:00
jgart bd8fdbe010
gnu: emacs-org-auto-tangle: Update to 0.6.0.
* gnu/packages/emacs-xyz.scm (emacs-org-auto-tangle): Update to 0.6.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-15 10:52:55 +08:00
gyara 76ef73f81f
gnu: dunst: Update to 1.9.0.
* gnu/packages/dunst.scm (dunst): Update to 1.9.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-15 09:45:59 +08:00
Nicolas Goaziou 20d8081eda
gnu: emacs-reverse-im: Update to 0.0.8.
* gnu/packages/emacs-xyz.scm (emacs-reverse-im): Update to 0.0.8.
2022-08-15 00:23:17 +02:00
Nicolas Goaziou ab338804ba
gnu: emacs-gruvbox-theme: Update to 1.30.0.
* gnu/packages/emacs-xyz.scm (emacs-gruvbox-theme): Update to 1.30.0.
2022-08-15 00:23:16 +02:00
Nicolas Goaziou 06d8d629c7
gnu: emacs-autothemer: Update to 0.2.5.
* gnu/packages/emacs-xyz.scm (emacs-autothemer): Update to 0.2.5.
2022-08-15 00:23:16 +02:00
Nicolas Goaziou fa30df8a65
gnu: emacs-citar: Update to 1.0.
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 1.0.
2022-08-15 00:23:16 +02:00
Nicolas Goaziou 40105da3f8
gnu: emacs-citeproc-el: Update to 0.9.1.
* gnu/packages/emacs-xyz.scm (emacs-citeproc-el): Update to 0.9.1.
2022-08-15 00:23:16 +02:00
Nicolas Goaziou bf0b51260e
gnu: emacs-buttercup: Improve package style.
* gnu/packages/emacs-xyz.scm (emacs-buttercup)[arguments]: Use
G-expressions. Remove trailing #T from phases.
2022-08-15 00:23:15 +02:00
Nicolas Goaziou f5b51a6212
gnu: emacs-buttercup: Update to 1.26.
* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.26.
2022-08-15 00:23:15 +02:00
Nicolas Goaziou 6097e97b2d
gnu: emacs-debbugs: Update to 0.33.
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.33.
2022-08-15 00:23:15 +02:00
Vagrant Cascadian b30614b28c
gnu: itpp: Remove non-deterministic log file.
* gnu/packages/maths.scm (itpp)[arguments]: Add 'delete-formulas-log phase.
2022-08-14 15:14:28 -07:00
Ricardo Wurmus 51f978f4ad
gnu: r-rcppparallel: Do not use bundled tbb.
* gnu/packages/cran.scm (r-rcppparallel)[inputs]: Add tbb-2020.
[arguments]: Add build phase 'use-system-tbb to set TBB_ROOT.
[source]: Add snippet to remove bundled tbb.
2022-08-14 21:07:10 +02:00
Ricardo Wurmus a5f199732b
gnu: r-reticulate: Build reproducibly.
* gnu/packages/cran.scm (r-reticulate)[arguments]: Add build phase
'build-reproducibly to ensure that pyc files are built reproducibly.
2022-08-14 20:57:55 +02:00
Ricardo Wurmus 593327ef5b
gnu: r-bgx: Build without CPU tuning.
Fixes <https://issues.guix.gnu.org/57210>.

* gnu/packages/bioconductor.scm (r-bgx)[arguments]: Add phase
'do-not-tune-cflags-for-reproducibility to patch configure.ac.
[inputs]: Add boost.
[native-inputs]: Add autoconf and automake.
2022-08-14 20:43:01 +02:00
Ricardo Wurmus 8e87bbde13
gnu: r-lpsymphony: Build reproducibly.
* gnu/packages/bioconductor.scm (r-lpsymphony)[arguments]: Add build phase
'make-build-order-reproducible.
2022-08-14 20:43:00 +02:00
Christine Lemmer-Webber 8337787720
Update copyright/name notices for Christine Lemmer-Webber.
* gnu/packages/games.scm: Update copyright/name notices for Christine
Lemmer-Webber.
2022-08-14 13:43:07 -04:00
Tobias Geerinckx-Rice 2a24c4a138
gnu: moe: Update to 1.12.
* gnu/packages/moe.scm (moe): Update to 1.12.
2022-08-07 02:00:10 +02:00
kiasoc5 via Guix-patches via ca4ab89ddd
gnu: usbguard: Update to 1.1.1 [fixes CVE-2019-25058].
* gnu/packages/hardware.scm (usbguard): Update to 1.1.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-08-07 02:00:01 +02:00
kiasoc5 via Guix-patches via 9b176a05f9
gnu: usbguard: Use new package style.
Use G-exps and #$output while we're at it.

* gnu/packages/hardware.scm (usbguard)[arguments]: Use G-expressions.
<#:phases>: Use '#$output' instead of 'assoc-ref'

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-08-07 02:00:01 +02:00
Tobias Geerinckx-Rice 53b2fda6fe
gnu: mcelog: Update to 187.
* gnu/packages/linux.scm (mcelog): Update to 187.
2022-08-07 02:00:00 +02:00
Efraim Flashner 360bf760bd
gnu: pies: Remove pre-generated files.
* gnu/packages/admin.scm (pies)[source]: Add snippet to remove
pre-generated files.
[native-inputs]: Add bison, flex.
2022-08-14 17:58:00 +03:00
Efraim Flashner f9666e40d3
gnu: pies: Update to 1.8.
* gnu/packages/admin.scm (pies): Update to 1.8.
2022-08-14 17:50:54 +03:00
Efraim Flashner d521ad06e0
gnu: yt-dlp: Only build with pandoc on supported systems.
* gnu/packages/video.scm (yt-dlp)[arguments]: Adjust custom
'build-generated-files phase to adjust to the presence of pandoc.
[native-inputs]: Make explicit list. Only include pandoc on supported
systems.
2022-08-14 17:07:20 +03:00