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46891 commits

Author SHA1 Message Date
Ludovic Courtès
75a6f66815
tests: Move 'guix environment -C --no-cwd' test where it belongs.
This ensures that this test is skipped in contexts where user namespaces
are not supported, instead of failing.

This is a followup to commit b6dc08393e.

* tests/guix-environment.sh: Move '--container --no-cwd' test to...
* tests/guix-environment-container.sh: ... here.
2019-08-17 16:23:05 +02:00
Ludovic Courtès
37592014e1
tests: Relax expectations for the 'home-page' checker.
Fixes a regression introduced in
50fc2384fe.

* tests/lint.scm (warning-contains?): New procedure.
("home-page: host not found"): Use 'warning-contains?' instead of
testing for equality, as was the case before commit 50fc2384fe.
This handles the case where the 'getaddrinfo' error is not "Name or
service not known" but instead something like "System error" or
"Servname not supported for ai_socktype", as is the case in the build
environment.
2019-08-17 16:23:05 +02:00
宋文武
02460db047
machine: ssh: Fix sanity checks.
* gnu/machine/ssh.scm
(machine-check-file-system-availability)[check-labeled-file-system]: Use
'source-module-closure' for '(gnu build file-systems)'.
(machine-check-initrd-modules): Unquote 'file-system-label->string' instead of
'device'.
2019-08-17 20:45:13 +08:00
Rutger Helling
2a63974df9
gnu: wine-staging: Update to 4.14.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.14.
* gnu/packages/wine.scm (wine-staging): Update to 4.14.
* gnu/packages/wine.scm (wine64-staging): Remove obsolete comment.
2019-08-17 10:03:11 +02:00
Giacomo Leidi
a830d14d4b
gnu: Add libgit2-glib.
* gnu/packages/gnome.scm (libgit2-glib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-08-16 23:00:27 +02:00
Guillaume Le Vaillant
7d30b58808
gnu: gramps: Update to 5.0.2.
* gnu/packages/genealogy.scm (gramps): Update to 5.0.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-08-16 23:00:27 +02:00
Guillaume Le Vaillant
66d146639d
gnu: txr: Update to 223.
* gnu/packages/lisp.scm (txr): Update to 223.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-08-16 23:00:27 +02:00
Timotej Lazar
3b165f2a40
gnu: wpa-supplicant: install documentation.
* gnu/packages/admin.scm (wpa-supplicant)[arguments]: Rename
'install-man-pages' phase to 'install-documentation'; install READMEs
and the example config file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-08-16 23:00:27 +02:00
Ludovic Courtès
c85ccf60bf
linux-modules: Define and use a module name database.
Fixes <https://bugs.gnu.org/34902>.
Reported by Julien Lepiller <julien@lepiller.eu>.

* gnu/build/linux-modules.scm (module-formal-name): New procedure.
(load-linux-modules-from-directory)[lookup-module]: Remove.
[module-name->file-name]: New variable.  Use it.
(module-name->file-name/guess, module-name-lookup)
(write-module-name-database): New procedures.
* gnu/system/linux-initrd.scm (flat-linux-module-directory): Call
'write-module-name-database'.
2019-08-16 23:00:27 +02:00
Ludovic Courtès
e1a9a7f275
linux-modules: Add 'load-linux-modules-from-directory'.
* gnu/build/linux-modules.scm (load-linux-modules-from-directory): New
procedure.
* gnu/build/linux-boot.scm (boot-system)[lookup-module]: Remove.
Use 'load-linux-modules-from-directory' instead.
2019-08-16 23:00:27 +02:00
Ludovic Courtès
2a693b69ca
linux-modules: Add "modules.devname" writer.
* gnu/build/linux-modules.scm (aliases->device-tuple)
(write-module-device-database): New procedures.
(%not-dash): New variable.

Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>.
2019-08-16 23:00:27 +02:00
Danny Milosavljevic
4f8b9d1a6f
linux-modules: Add "modules.alias" writer.
* gnu/build/linux-modules.scm (write-module-alias-database): New
procedure.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-08-16 23:00:27 +02:00
Ludovic Courtès
268896444b
derivations: Delete duplicate inputs when computing derivation hash.
Fixes <https://bugs.gnu.org/36777>.
Reported by Carl Dong <contact@carldong.me>.

* guix/derivations.scm (derivation/masked-inputs): Call
'delete-duplicates' on INPUTS.
* tests/derivations.scm ("derivation with duplicate fixed-output inputs"):
New test.
2019-08-16 23:00:26 +02:00
Ludovic Courtès
a7c714d398
channels: Add 'profile-channels'.
* guix/channels.scm (profile-channels): New procedure.
* guix/scripts/describe.scm (display-profile-info)[channels]: Define in
terms of 'profile-channels'.
2019-08-16 23:00:26 +02:00
Ricardo Wurmus
b65bd33c36
gnu: r-edger: Update to 3.26.7.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.7.
2019-08-16 22:41:27 +02:00
Alva
93b3ef1966
gnu: font-ibm-plex: Update to 2.0.0.
* gnu/packages/fonts.scm (font-ibm-plex): Update to 2.0.0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-08-16 21:40:00 +02:00
Tobias Geerinckx-Rice
f781251bf2
gnu: wcslib: Update to 6.4.
* gnu/packages/astronomy.scm (wcslib): Update to 6.4.
2019-08-16 21:14:44 +02:00
Ricardo Wurmus
5063deab08
import: cran: Support experiment and annotation packages.
* guix/import/cran.scm (%bioconductor-packages-list-url): Replace variable...
(bioconductor-packages-list-url): ...with this procedure.
(bioconductor-packages-list): Accept optional TYPE argument.
(latest-bioconductor-package-version): Same.
(fetch-description): Determine package type and use it in calls to
LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(description->package): Pass package type to URI helper procedure; include
package type in annotation or experiment packages from Bioconducter.
2019-08-16 15:07:22 +02:00
Ricardo Wurmus
c586f427b4
build-system/r: bioconductor-uri: Take optional package type.
* guix/build-system/r.scm (bioconductor-uri): Take optional TYPE argument to
return annotation or experiment URLs.
2019-08-16 15:07:22 +02:00
Jakob L. Kreuze
4cc5e5204b
machine: Use 'become-command'.
* gnu/machine/ssh.scm (managed-host-remote-eval): Pass an appropriate
'become-command' to 'remote-eval'.
* guix/ssh.scm (remote-authorize-signing-key): Add optional
'become-command' argument.
All callers changed.
2019-08-16 08:47:28 -04:00
Jakob L. Kreuze
ddef146b89
remote: Resolve missing 'G_'.
* guix/remote.scm: Require (guix i18n).
2019-08-16 08:45:44 -04:00
Mark H Weaver
ccff55a25e
gnu: linux-libre: Update to 5.2.9.
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.9.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
2019-08-16 05:33:54 -04:00
Mark H Weaver
97f40332d4
gnu: linux-libre@4.19: Update to 4.19.67.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.67.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
2019-08-16 05:33:09 -04:00
Mark H Weaver
f1d2e4bac0
gnu: linux-libre@4.14: Update to 4.14.139.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.139.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
2019-08-16 05:32:01 -04:00
Jelle Licht
44881cad93
gnu: Add swagger-diff.
* gnu/packages/ruby.scm (swagger-diff): New variable.
2019-08-15 22:00:02 +02:00
Jelle Licht
369faa5995
gnu: Add ruby-json-schema.
* gnu/packages/ruby.scm (ruby-json-schema): New variable.
2019-08-15 20:42:10 +02:00
Efraim Flashner
d4cf5b018a
gnu: einstein: Use mirror for source download.
* gnu/packages/games.scm (einstein)[source]: Use 'mirror' syntax.
2019-08-15 21:03:19 +03:00
Marius Bakke
e3a39ade71
gnu: Remove python2-internetarchive.
This trivial package fails to build and has no reverse dependencies.

* gnu/packages/web.scm (python2-internetarchive): Remove variable.
(python-internetarchive)[properties]: Remove.
2019-08-15 19:40:28 +02:00
Marius Bakke
ef8c83bdb9
gnu: python-responses: Update to 0.10.6.
* gnu/packages/python-web.scm (python-responses): Update to 0.10.6.
2019-08-15 19:18:11 +02:00
Ricardo Wurmus
a9815a6cf2
gnu: Add r-cistopic.
* gnu/packages/bioconductor.scm (r-cistopic): New variable.
2019-08-15 17:44:25 +02:00
Ricardo Wurmus
bb88417fb7
gnu: Add r-rcistarget.
* gnu/packages/bioconductor.scm (r-rcistarget): New variable.
2019-08-15 17:44:25 +02:00
Ricardo Wurmus
19f1aac0e7
gnu: Add r-lda.
* gnu/packages/cran.scm (r-lda): New variable.
2019-08-15 17:44:25 +02:00
Ricardo Wurmus
86d3822862
gnu: Add r-liger.
* gnu/packages/cran.scm (r-liger): New variable.
2019-08-15 17:03:23 +02:00
Ricardo Wurmus
9c3bfea673
gnu: Add r-patchwork.
* gnu/packages/cran.scm (r-patchwork): New variable.
2019-08-15 17:03:23 +02:00
Ricardo Wurmus
6e7553ffe0
gnu: Add r-rann-l1.
* gnu/packages/cran.scm (r-rann-l1): New variable.
2019-08-15 17:03:23 +02:00
Rutger Helling
2cbe7044ea
Revert "gnu: libinput: Update to 1.14.0."
This reverts commit dfdd7380a1.
libinput-minimal causes too many rebuilds.
2019-08-15 16:28:21 +02:00
Rutger Helling
dfdd7380a1
gnu: libinput: Update to 1.14.0.
* gnu/packages/freedesktop.scm (libinput): Update to 1.14.0.
2019-08-15 16:21:53 +02:00
Ricardo Wurmus
1c4e6aa938
gnu: Add itk-snap.
* gnu/packages/image-processing.scm (itk-snap): New variable.
2019-08-15 14:09:14 +02:00
Ricardo Wurmus
07f36b0c53
gnu: Add insight-toolkit-4.12.
* gnu/packages/image-processing.scm (insight-toolkit-4.12): New variable.
2019-08-15 14:09:14 +02:00
Ricardo Wurmus
8f4d457d93
gnu: Add insight-toolkit-4.
* gnu/packages/image-processing.scm (insight-toolkit-4): New variable.
2019-08-15 14:09:13 +02:00
Ricardo Wurmus
d7701e1b94
gnu: Add insight-toolkit.
* gnu/packages/image-processing.scm (insight-toolkit): New variable.
2019-08-15 14:09:13 +02:00
Ricardo Wurmus
4243af4e57
gnu: Add vxl-1.
* gnu/packages/image-processing.scm (vxl-1): New variable.
2019-08-15 14:09:13 +02:00
Ricardo Wurmus
02e1acfb2a
gnu: Add vxl.
* gnu/packages/image-processing.scm (vxl): New variable.
2019-08-15 14:09:13 +02:00
Ricardo Wurmus
18696f7acf
gnu: Add vtk-6.
* gnu/packages/image-processing.scm (vtk-6): New variable.
2019-08-15 14:08:59 +02:00
Jakob L. Kreuze
5f32531770
remote: Use (%daemon-socket-uri) rather than hard-coded path.
* guix/remote.scm (remote-eval): Use (%daemon-socket-uri) as the default
value of 'socket-name' rather than hard-coded path.
2019-08-15 07:43:21 -04:00
Jakob L. Kreuze
3967a946c6
doc: Add description of 'build-locally?'.
* doc/guix.texi (Invoking guix deploy): Add section describing the
'build-locally?' field of 'managed-host-environment-type'.
2019-08-15 07:43:17 -04:00
Jakob L. Kreuze
3033d59ac9
machine: Automatically authorize the coordinator's signing key.
* guix/ssh.scm (remote-authorize-signing-key): New variable.
* gnu/machine/ssh.scm (deploy-managed-host): Authorize coordinator's
signing key before any invocations of 'remote-eval'.
(deploy-managed-host): Display an error if a signing key does not exist.
* doc/guix.texi (Invoking guix deploy): Remove section describing manual
signing key authorization.
(Invoking guix deploy): Add section describing the 'authorize?' field.
2019-08-15 07:43:13 -04:00
Jakob L. Kreuze
9c70c460a0
machine: Implement 'roll-back-machine'.
* gnu/machine.scm (roll-back-machine, &deploy-error, deploy-error?)
(deploy-error-should-roll-back)
(deploy-error-captured-args): New variable.
* gnu/machine/ssh.scm (roll-back-managed-host): New variable.
* guix/scripts/deploy.scm (guix-deploy): Roll-back systems when a
deployment fails.
2019-08-15 07:43:09 -04:00
Jakob L. Kreuze
5ea7537b9a
machine: Allow non-root users to deploy.
* doc/guix.texi (Invoking guix deploy): Add section describing
prerequisites for deploying as a non-root user.
* guix/remote.scm (remote-pipe-for-gexp): New optional 'become-command'
argument.
(%remote-eval): New optional 'become-command' argument.
(remote-eval): New 'become-command' keyword argument.
* guix/ssh.scm (remote-inferior): New optional 'become-command'
argument.
(inferior-remote-eval): New optional 'become-command' argument.
(remote-authorize-signing-key): New optional 'become-command' argument.
* gnu/machine/ssh.scm (machine-become-command): New variable.
(managed-host-remote-eval): Invoke 'remote-eval' with the
'#:become-command' keyword.
(deploy-managed-host): Invoke 'remote-authorize-signing-key' with the
'#:become-command' keyword.
2019-08-15 07:43:03 -04:00
Jakob L. Kreuze
03cbd94d48
remote: Remove '--system' argument.
* gnu/services.scm (activation-script): Return a <program-file> rather
than a <scheme-file>.
* gnu/deploy.scm (guix-deploy): Remove handling for '--system'.
(show-help): Remove documentation for '--system'.
(%default-options): Remove default setting for 'system'.
2019-08-14 15:38:13 -04:00