Commit graph

116720 commits

Author SHA1 Message Date
Ricardo Wurmus c66e5ef5f9
gnu: cutadapt: Update to 4.0.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 4.0.
[build-system]: Use pyproject-build-system.
[arguments]: Disable a single test; remove 'always-cythonize build phase; add
phase 'fix-test.
[native-inputs]: Add python-pytest-mock and python-pytest-timeout.
2023-07-03 16:37:45 +02:00
Ricardo Wurmus cb15c60d35
gnu: python-dnaio: Update to 0.10.0.
* gnu/packages/bioinformatics.scm (python-dnaio): Update to 0.10.0.
[arguments]: Disable tests, because they don't exist.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools-scm; move python-xopen from here...
[propagated-inputs]: ...to here.
2023-07-03 16:36:53 +02:00
Ricardo Wurmus 1b956b17b2
gnu: python-xopen: Update to 1.7.0.
* gnu/packages/python-xyz.scm (python-xopen): Update to 1.7.0.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add pigz, python-isal, and python-typing-extensions; move
python-setuptools-scm from here...
[native-inputs]: ...to here; add python-pytest and python-pytest-timeout.
[description]: Reflow.
2023-07-03 16:35:48 +02:00
Ricardo Wurmus d56a6fa9b2
gnu: python-isal: Update to 1.1.0.
* gnu/packages/python-compression.scm (python-isal): Update to 1.1.0.
[build-system]: Use pyproject-build-system.
2023-07-03 16:07:54 +02:00
Navid Afkhami 669f0eaed6
gnu: Add r-dtmm.
* gnu/packages/bioinformatics.scm (r-dtmm): New variable.
2023-07-03 13:42:47 +02:00
Navid Afkhami 29ccd7cac9
gnu: Add r-fsa.
* gnu/packages/cran.scm (r-fsa): New variable.
2023-07-03 10:00:16 +02:00
Navid Afkhami 9dda8cdde5
gnu: Add r-dicekriging.
* gnu/packages/cran.scm (r-dicekriging): New variable.
2023-07-03 09:59:55 +02:00
Navid Afkhami 11651fbf7f
gnu: Add r-cellid.
* gnu/packages/bioconductor.scm (r-cellid): New variable.
2023-07-03 09:58:57 +02:00
Navid Afkhami 6398fa7860
gnu: Add r-dunn-test.
* gnu/packages/cran.scm (r-dunn-test): New variable.
2023-07-03 09:57:56 +02:00
Navid Afkhami 896c872306
gnu: Add r-ggfittext.
* gnu/packages/cran.scm (r-ggfittext): New variable.
2023-07-03 09:57:15 +02:00
Navid Afkhami 4ef4de633c
gnu: Add r-tidyft.
* gnu/packages/cran.scm (r-tidyft): New variable.
2023-07-03 09:57:15 +02:00
Navid Afkhami cd7900c71f
gnu: Add r-emoa.
* gnu/packages/cran.scm (r-emoa): New variable.
2023-07-03 09:56:41 +02:00
Navid Afkhami aae5f41b36
gnu: Add r-mlrmbo.
* gnu/packages/cran.scm (r-mlrmbo): New variable.
2023-07-03 09:56:14 +02:00
Navid Afkhami 3f055028ac
gnu: Add r-mlr.
* gnu/packages/cran.scm (r-mlr): New variable.
2023-07-03 09:47:15 +02:00
Navid Afkhami 155e3f2e87
gnu: Add r-parallelmap.
* gnu/packages/cran.scm (r-parallelmap): New variable.
2023-07-03 09:45:16 +02:00
Navid Afkhami 143ecd555a
gnu: Add r-smoof.
* gnu/packages/cran.scm (r-smoof): New variable.
2023-07-03 09:44:15 +02:00
Navid Afkhami 828f75ce75
gnu: Add r-paramhelpers.
* gnu/packages/cran.scm (r-paramhelpers): New variable.
2023-07-03 09:43:43 +02:00
Ricardo Wurmus eb55223e28
gnu: r-v8: Update to 4.3.1.
* gnu/packages/cran.scm (r-v8): Update to 4.3.1.
[properties]: Let updater ignore libnode.
2023-07-03 09:36:31 +02:00
Danny Milosavljevic 08649cfcd4
gnu: jbr: Make big cursors work.
* gnu/packages/patches/jbr-17-xcursor-no-dynamic.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (jbr17)[source]<#:patches>: Add it.
2023-07-03 03:09:30 +02:00
Danny Milosavljevic 6cdab8fd09
gnu: Add jbr.
* gnu/packages/java.scm (jbr17): New variable.
2023-07-03 00:01:29 +02:00
Hartmut Goebel 246445b20d
gnu: nextcloud-client: Update to 3.8.2.
* gnu/packages/sync.scm (nextcloud-client): Update to 3.8.2.
[snippets]: Keep 3rd-party files from kirigami. Remove more references of
deleted 3rd parties.  Adjust substitute for new code.
[configure-flags]: Disable building the updater.
[phases]<patch-cmake>: Adjust substitute for new code.
<check>: Use custom phase to disable a failing test.
[inputs]: Add dbus and karchive.
[native-inputs]: Add librsvg-for-system.
2023-07-02 20:40:59 +02:00
Hartmut Goebel 1d471bbe44
gnu: podman: Fix path to helper binaries.
'quadlet' and 'rootlessport' coming with podman reside in
"#$output/libexex/podman", not in "#$output/bin".  Thus search this
first.

* gnu/packages/containers.scm (podman)[phases]<fix-hardcoded-paths>:
  Change subsitution for "/usr/local/libexec/podman", add substitution
  for "/usr/local/lib/podman".
2023-07-02 20:27:22 +02:00
Cory Fields 39a3251feb
gnu: llvm: make clang-make-toolchain public
Matches gcc-make-toolchain. Allow for llvm build to be patched.

* gnu/packages/llvm.scm: make clang-make-toolchain public

Signed-off-by: Carl Dong <contact@carldong.me>
2023-07-02 13:12:02 -04:00
Vagrant Cascadian a919a16898
gnu: python-pyelftools: Update to 0.29.
* gnu/packages/python-xyz.scm (python-pyelftools): Update to 0.29.
2023-07-01 18:57:33 -07:00
Nicolas Graves c4a836f65d
gnu: Add python-tree-sitter.
* gnu/packages/tree-sitter.scm (python-tree-sitter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Reviewed-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
2023-07-01 23:38:27 +02:00
Hilton Chain 5da45e54c5
gnu: Add miniflux.
* gnu/packages/web.scm (miniflux): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:27 +02:00
Hilton Chain 74adc15787
gnu: Add go-github-com-rylans-getlang.
* gnu/packages/golang.scm (go-github-com-rylans-getlang): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:27 +02:00
Hilton Chain 8e755ae077
gnu: Add go-github-com-matrix-org-gomatrix.
* gnu/packages/golang.scm (go-github-com-matrix-org-gomatrix): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:27 +02:00
Hilton Chain 7c9265c46f
gnu: Add go-github-com-go-telegram-bot-api-telegram-bot-api.
* gnu/packages/golang.scm (go-github-com-go-telegram-bot-api-telegram-bot-api): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:27 +02:00
Hilton Chain ae93b542b2
gnu: Add go-github-com-technoweenie-multipartstreamer.
* gnu/packages/golang.scm (go-github-com-technoweenie-multipartstreamer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:27 +02:00
Hilton Chain 71a2821105
gnu: Add go-github-com-tdewolff-minify-v2.
* gnu/packages/golang.scm (go-github-com-tdewolff-minify-v2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:27 +02:00
Hilton Chain ac481a0050
gnu: Add go-github-com-tdewolff-parse-v2.
* gnu/packages/golang.scm (go-github-com-tdewolff-parse-v2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:27 +02:00
Hilton Chain b7708699d9
gnu: Add go-github-com-tdewolff-test.
* gnu/packages/golang.scm (go-github-com-tdewolff-test): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:26 +02:00
Hilton Chain f52a41ab97
gnu: Add go-github-com-coreos-go-oidc.
* gnu/packages/golang.scm (go-github-com-coreos-go-oidc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:26 +02:00
Hilton Chain 9e9d73333d
gnu: Add go-gopkg-in-square-go-jose-v2.
* gnu/packages/golang.scm (go-gopkg-in-square-go-jose-v2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:26 +02:00
Hilton Chain f69e7eaf73
gnu: Add go-github-com-pquerna-cachecontrol.
* gnu/packages/golang.scm (go-github-com-pquerna-cachecontrol): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:26 +02:00
Bruno Victal a3363e50cf
gnu: mympd: Update to 10.3.3.
* gnu/packages/mpd.scm (mympd): Update to 10.3.3.
<arguments>: Honor 'strip phase.
<native-inputs>: Add missing pkg-config.
<description>: Reword it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:26 +02:00
Greg Hogan 740b423e9e
gnu: cabextract: Update to 1.11.
* gnu/packages/compression.scm (cabextract): Update to 1.11.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:26 +02:00
Greg Hogan f8c442e1ae
gnu: libmspack: Update to 0.11.
* gnu/packages/compression.scm (libmspack): Update to 0.11.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:26 +02:00
Feng Shu 2fd7edf41f
gnu: Remove duplicate import.
* gnu/packages/wm.scm: Remove duplicate (gnu packages gettext) import.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:26 +02:00
Antero Mejr 0dc8d4f8f0
gnu: Add plan9port.
* gnu/packages/plan9.scm (plan9port): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:25 +02:00
Andy Tai 2a723922ac
gnu: Add neon2sse
* gnu/packages/assembly.scm (neon2sse): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:25 +02:00
Vessel Vave f9bb27b9b0
gnu: Add swayfx.
* gnu/packages/wm.scm (swayfx): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:25 +02:00
Timo Wilken d6ca51d82a
gnu: php: Enable sysvsem module.
Nextcloud 26 strongly recommends installing this module.

* gnu/packages/php.scm: (php)[arguments]: Add "--enable-sysvsem" configure
  flag.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:25 +02:00
Z572 209c892ebe
gnu: zita-alsa-pcmi: Use new style for arguments.
* gnu/packages/audio.scm(zita-alsa-pcmi)[arguments]: Use
G-Expressions.  Delete trailing #ts.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:25 +02:00
Z572 42951e7c86
gnu: zita-alsa-pcmi: fix cross-build.
* gnu/packages/audio.scm (zita-alsa-pcmi): fix cross-build.
[arguments]: use CXX-FOR-TARGET.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:25 +02:00
Z572 3570d092ac
gnu: zita-alsa-pcmi: Do not build with "-march=native".
* gnu/packages/audio.scm (zita-alsa-pcmi): Do not build with "-march=native".
[arguments]<#:phases>: remove '-march=native' form source/Makefile.
[properties]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01 23:38:25 +02:00
Nicolas Goaziou 76e39909e8
Revert "gnu: nix: Use HTTPS for package source."
This reverts commit cdb3cd4afa.

Wrong patch revision.
2023-07-01 16:04:51 +02:00
Nicolas Goaziou f3e9dfc547
Revert "gnu: nix: Update to 2.16.0."
This reverts commit 554d46882b.

Wrong patch revision.
2023-07-01 16:04:29 +02:00
Nicolas Goaziou 196977fb64
Revert "gnu: Add rapidcheck."
This reverts commit 4236e24cb9.

Wrong patch revision.
2023-07-01 16:03:58 +02:00