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Author SHA1 Message Date
Ricardo Wurmus 83d3d1fd5c
gnu: r-strucchange: Update to 1.5-3. 
* gnu/packages/cran.scm (r-strucchange): Update to 1.5-3.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus 87f7a1a287
gnu: r-waveslim: Update to 1.8.3. 
* gnu/packages/cran.scm (r-waveslim): Update to 1.8.3.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus b91165737d
gnu: r-admisc: Update to 0.29. 
* gnu/packages/cran.scm (r-admisc): Update to 0.29.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus e1235cebb1
gnu: r-performance: Update to 0.9.1. 
* gnu/packages/cran.scm (r-performance): Update to 0.9.1.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus dbdb2c549d
gnu: r-emmeans: Update to 1.7.5. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.7.5.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus f235789e4d
gnu: r-sandwich: Update to 3.0-2. 
* gnu/packages/cran.scm (r-sandwich): Update to 3.0-2.
[source]: Add snippet to remove generated files.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus e813a7e9fb
gnu: r-raster: Update to 3.5-21. 
* gnu/packages/cran.scm (r-raster): Update to 3.5-21.
 2022-07-02 23:56:06 +02:00
Ricardo Wurmus d0e6af6159
gnu: r-itsadug: Update to 2.4.1. 
* gnu/packages/cran.scm (r-itsadug): Update to 2.4.1.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus 1a43188826
gnu: r-tinytex: Update to 0.40. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.40.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus 3a80c31e98
gnu: r-qap: Update to 0.1-2. 
* gnu/packages/cran.scm (r-qap): Update to 0.1-2.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus 572a9f0947
gnu: r-processx: Update to 3.6.1. 
* gnu/packages/cran.scm (r-processx): Update to 3.6.1.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus c182db1f59
gnu: r-broom: Update to 1.0.0. 
* gnu/packages/cran.scm (r-broom): Update to 1.0.0.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus 5136d669a4
gnu: r-idr: Update to 1.3. 
* gnu/packages/cran.scm (r-idr): Update to 1.3.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus 139d7f6239
gnu: r-pkgload: Update to 1.3.0. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.0.
[propagated-inputs]: Remove r-rstudioapi; add r-fs and r-glue.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus 54abf9ba3a
gnu: r-ps: Update to 1.7.1. 
* gnu/packages/cran.scm (r-ps): Update to 1.7.1.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus e1a2ff1793
gnu: r-partykit: Update to 1.2-16. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-16.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus f7434908a6
gnu: r-reordercluster: Update to 2.0. 
* gnu/packages/cran.scm (r-reordercluster): Update to 2.0.
[propagated-inputs]: Add r-gtools.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus 961851c5d6
gnu: r-ggpmisc: Update to 0.4.7. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.7.
 2022-07-02 23:56:05 +02:00
Ricardo Wurmus 01790a6cd6
gnu: r-restfulr: Update to 0.0.15. 
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15.
 2022-07-02 23:56:04 +02:00
Julien Lepiller c573c79ef3
gnu: ocaml-migrate-parsetree: Update to 2.4.0. 
* gnu/package/ocaml.scm (ocaml-migrate-parsetree): Update to 2.4.0.
 2022-07-02 22:25:46 +02:00
Julien Lepiller b811245168
gnu: ocaml-lwt-react: Update to 1.2.0. 
* gnu/packages/ocaml.scm (ocaml-lwt-react): Update to 1.2.0.
 2022-07-02 22:25:39 +02:00
Julien Lepiller f66ff1d267
gnu: ocaml-lwt: Update to 5.6.1. 
* gnu/packages/ocaml.scm (ocaml-lwt): Update to 5.6.1.
 2022-07-02 22:25:36 +02:00
Julien Lepiller e0ecf85969
gnu: dune: Update to 3.3.1. 
* gnu/packages/ocaml.scm (dune): Update to 3.3.1.
 2022-07-02 22:25:33 +02:00
Julien Lepiller ac0415fdd9
gnu: ocaml-camlp-streams: Update to 5.0.1. 
* gnu/packages/ocaml.scm (ocaml-camlp-streams): Update to 5.0.1.
 2022-07-02 22:25:18 +02:00
Stephen Paul Weber b01043a8ce
gnu: Add ruby-blather. 
* gnu/packages/ruby.scm (ruby-blather): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-07-02 12:01:41 -04:00
Stephen Paul Weber d633207a70
gnu: Add ruby-niceogiri. 
* gnu/packages/ruby.scm (ruby-niceogiri): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-07-02 12:01:40 -04:00
Liliana Marie Prikler 48ff4bfcd7
gnu: gdk-pixbuf: Add removal hint for libx11. 
* gnu/packages/gtk.scm (gdk-pixbuf)[propagated-inputs]: Add hint to remove
libx11 on core-updates.
 2022-07-02 13:49:42 +02:00
Tomasz Jeneralczyk b02225b614
gnu: Add gdk-pixbuf-xlib. 
This was part of gtk-pixbuf before but was split into its own library
in version 2.42.0: https://gitlab.gnome.org/GNOME/gdk-pixbuf/-/tags/2.42.0

* gnu/packages/gtk.scm (gtk-pixbuf-xlib): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 13:49:35 +02:00
Liliana Marie Prikler aaf4694b9f
gnu: dino: Run tests. 
* gnu/packages/messaging.scm (dino)[arguments]<#:tests?>: Drop.
<#:configure-flags>: Add “-DBUILD_TESTS=true”.
<#:phases>: Replace ‘check’ with manual invocations of the test binaries.
 2022-07-02 13:37:20 +02:00
Liliana Marie Prikler fe111f404d
gnu: dino: Use new package style. 
* gnu/packages/messaging.scm (dino)[arguments]: Convert to list of
G-Expressions.
[native-inputs, inputs]: Drop labels.
 2022-07-02 13:37:20 +02:00
Raghav Gururajan 9b73b76cad
gnu: Add kaidan. 
* gnu/packages/messaging.scm (kaidan): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 13:37:19 +02:00
Raghav Gururajan 3b32297e2d
gnu: bitmask: Update to 0.21.11. 
* gnu/packages/vpn.scm (bitmask)[version]: Update to 0.21.11.
[inputs]: Add qtsvg.
 2022-07-02 06:47:48 -04:00
Pierre Neidhardt e00431806f
gnu: sbcl-nhooks: Update to 1.1.1. 
* gnu/packages/lisp-xyz.scm (sbcl-nhooks): Update to 1.1.1.
 2022-07-02 12:38:26 +02:00
Thiago Jung Bauermann 0fb144549d
gnu: gdm: Use regular check. 
* gnu/packages/gnome.scm (gdm)[native-inputs]: Replace check-0.14 with check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 11:28:28 +02:00
Thiago Jung Bauermann fe16fe59ee
gnu: iodine: Use regular check. 
* gnu/packages/networking.scm (iodine)[native-inputs]: Replace check-0.14 with
check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 11:28:28 +02:00
Thiago Jung Bauermann 4d77072c56
gnu: libsbml: Use regular check. 
* gnu/packages/bioinformatics.scm (libsbml)[native-inputs]: Replace check-0.14
with check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 11:28:28 +02:00
Thiago Jung Bauermann 71ccba00e7
gnu: edi: Use regular check. 
* gnu/packages/enlightenment.scm (edi)[native-inputs]: Replace check-0.14 with
check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 11:28:27 +02:00
Thiago Jung Bauermann b6b47a4423
gnu: burp: Use regular check. 
* gnu/packages/backup.scm (burp)[native-inputs]: Replace check-0.14 with
check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 11:28:27 +02:00
Thiago Jung Bauermann b35fd27831
gnu: libsigrokdecode: Use regular check. 
* gnu/packages/electronics.scm (libsigrokdecode)[native-inputs]: Replace
check-0.14 with check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 11:28:27 +02:00
Thiago Jung Bauermann e116e43d0c
gnu: recutils: Use regular check. 
* gnu/packages/databases.scm (recutils)[native-inputs]: Replace check-0.14
with check.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-07-02 11:28:27 +02:00
Liliana Marie Prikler aeb8c4fbea
gnu: curl: Skip failing test on x86-32. 
* gnu/packages/curl.scm (curl-7.84.0)[arguments]<#:phases>: When running on
x86-32, add a phase to skip test 3026 “curl_global_init thread-safety”.
 2022-07-02 11:13:41 +02:00
Liliana Marie Prikler 2533e7f8d1
gnu: ibus-anthy: Modernize arguments. 
* gnu/packages/ibus.scm (ibus-anthy)[arguments]: Convert to list of
G-Expressions.
 2022-07-02 01:09:19 +02:00
Liliana Marie Prikler 421b47624c
gnu: ibus-anthy: Archaize wrapper. 
This is a follow-up to 39b118776b, which
applied the wrong modernization metaphors.  For more information, see
<https://issues.guix.gnu.org/52576#16>.

* gnu/packages/ibus.scm (ibus-anthy)[#:phases]<wrap-programs>: Refer to
outputs by assoc-ref.
 2022-07-02 01:05:16 +02:00
Ludovic Courtès bee2c369fa
tests: Adjust 'guix graph' test to latest OCaml changes. 
* tests/graph.scm ("reverse bag DAG"): Adjust to latest OCaml changes by
looking at dune/ocaml-camomile/ocaml-utop.
 2022-07-01 23:29:16 +02:00
Ludovic Courtès 4ff12d1de7
profiles: Do not repeat entries in 'manifest' file. 
Fixes <https://issues.guix.gnu.org/55499>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

With this change, the manifest file created for:

  guix install r r-seurat r-cistopic r-monocle3 r-cicero-monocle3 r-assertthat

goes from 5.7M to 176K.  Likewise, on this profile, wall-clock time of:

  GUIX_PROFILING=gc guix package -I

goes from 0.7s to 0.1s, with heap usage going from 55M to 9M.

* guix/profiles.scm (manifest->gexp)[optional]: New procedure.
[entry->gexp]: Turn into a monadic procedure.  Return a 'repeated' sexp
if ENTRY was already visited before.
Adjust caller accordingly.  Bump manifest version.
(sexp->manifest)[sexp->manifest-entry]: Turn into a monadic procedure.
Add case for 'repeated' nodes.  Add each entry to the current state
vhash.
Add clause for version 4 manifests.
[sexp->manifest-entry/v3]: New procedure, with former
'sexp->manifest-entry' code.
* tests/profiles.scm ("deduplication of repeated entries"): New test.
* guix/build/profiles.scm (manifest-sexp->inputs+search-paths)[let-fields]:
New macro.
Use it.  Expect version 4.  Add clause for 'repeated' nodes.
 2022-07-01 23:29:16 +02:00
Ludovic Courtès 9b8c442b25
tests: Augment profile collision test. 
* tests/profiles.scm ("collision of propagated inputs"): Check the
parents of ENTRY1 and ENTRY2.
 2022-07-01 23:29:16 +02:00
Ludovic Courtès bf7e07d299
services: openssh: Listen on IPv6 only when IPv6 is supported. 
Fixes <https://issues.guix.gnu.org/56327>.
Reported by André Batista <nandre@riseup.net>.

* gnu/services/ssh.scm (openssh-shepherd-service)[ipv6-support?]: New
variable.
Use it in 'start' method.
 2022-07-01 23:29:16 +02:00
Ludovic Courtès b512dadfd6
upstream: 'guix refresh -u' no longer stops when upstream info is lacking. 
Fixes <https://issues.guix.gnu.org/56338>.

Starting from 53b9c27aa5, 'guix refresh -u'
would stop upon the first failure to determine upstream releases.  This
fixes that.

* guix/upstream.scm (package-update): Warn rather than update.
 2022-07-01 23:29:15 +02:00
Sughosha aba1ee5553
gnu: Add luppp. 
* gnu/packages/music.scm (luppp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 19:12:01 +02:00
Sughosha 697e75fca5
gnu: Add fabla. 
* gnu/packages/music.scm (fabla): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 19:08:46 +02:00