Commit graph

16863 commits

Author SHA1 Message Date
Ricardo Wurmus
84590149e6
gnu: hisat: Fix typo.
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Fix directory
name in install phase.
2016-11-15 20:21:08 +01:00
Ricardo Wurmus
49c2665f7b
gnu: Add pcb-rnd.
* gnu/packages/engineering.scm (pcb-rnd): New variable.
2016-11-15 20:21:03 +01:00
Hartmut Goebel
e442246a2f
lint: more packages to probably be a native input.
* guix/scripts/lint.scm (check-inputs-should-be-native package): Add python
  packages which are typically used for testing or for building the
  documentation.
2016-11-15 17:37:50 +01:00
Hartmut Goebel
891a843d51
guix: Add lint-checker for packages which should be no inputs at all.
Also refactor some common code into a new function.

Examples for these pacakges are python(2)-setuptools and python(2)-pip, which
are installed together with python itself.

* guix/scripts/lint.scm (warn-if-package-has-input): New procedure.
  (check-inputs-should-be-native package): Use it; rename and clean-up
  variables. (check-inputs-should-not-be-an-input-at-all): New procedure.
  (%checkers) Add it.
* doc/guix.texi (Python Modules): Document it.
* tests/lint.scm: ("inputs: python-setuptools should not be an input at all
  (input)", "inputs: python-setuptools should not be an input at all
  (native-input)" "inputs: python-setuptools should not be an input at all
  (propagated-input)"): Add tests.
2016-11-15 17:37:49 +01:00
Hartmut Goebel
15e57f5762
gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes.
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
2016-11-15 17:37:48 +01:00
Hartmut Goebel
c1019287a4
guix: python-build-system: Add background about Python installation methods. 2016-11-15 17:37:47 +01:00
Hartmut Goebel
b002f964bb
guix: python-build-system: Delete .egg-info file created in phase check.
* guix/build/python-build-system.scm (check): Delete .egg-info dirs
  which did not exist prior to calling setup.py but afterwards.
2016-11-15 17:37:46 +01:00
Hartmut Goebel
a2ff4f0240
guix: python-build-system: Add helpers for getting and setting PYTHONPATH.
* guix/build/python-build-system.scm (add-installed-pythonpath,
  site-packages): New exported procedures.
2016-11-15 17:37:45 +01:00
Hartmut Goebel
5f7565d190
guix: python-build-system: Add option "#:use-setuptools?" (default true).
* guix/build-system/python.scm (python-build): New keyword argument
  "#:use-setuptools?", defaulting to #t.
* guix/build/python-build-system.scm (call-setup-py): New positional
  parameter "use-setuptools?". If false, do not use the shim-wrapper
  for addin setuptools. (build, check): accept keyword-
  parameter, and pass to call-setuppy. (install): same; if
  "use-setuptools?" is false, do not use options "--root" and
  "--single-version-externally-managed" for setup.py.
* doc/guix.texi (Build Systems): Document it.
2016-11-15 17:37:44 +01:00
Marius Bakke
46bcdcc287
guix: python-build-system: Import setuptools before calling `setup.py'.
This is needed for packages using "distutils" instead of "setuptools" since
the former does not understand the "--single-version-externally-managed"
flag. Also export __file__ since it will be unset when setup.py is called from
python "exec".

* guix/build/python-build-system.scm (call-setuppy): extend "python setup.py"
  call to import setuptools, export __file__, and call setup.py from
  setuptools python environment.

Co-Authored-By: Hartmut Goebel <h.goebel@crazy-compilers.com>
2016-11-15 17:37:43 +01:00
Hartmut Goebel
7db40bce58
guix: build all Python packages with --single-version-externally-managed.
This requires setuptools to be installed together with python, which is
the case for Python 3 anyway and which we do for our build of Python 2
(see last commit).

* guix/build/python-build-system.scm (install): Add
  "--single-version-externally-managed" and "--root=/" to params to be
  passed to call-setuppy. Remove thus needless manipulation of
  PYTHONPATH. Remove now unused argument "inputs".
2016-11-15 17:37:41 +01:00
Hartmut Goebel
aaf75c890b
gnu: ensure pip and setuptools are installed even for Python 2.
* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
  configure-flags.
* doc/guix.texi (Python Modules): Document it.
2016-11-15 17:37:40 +01:00
Hartmut Goebel
043a51c0c2
guix: python-build-system: Fix an outdated comment. 2016-11-15 17:37:39 +01:00
Efraim Flashner
b02b9a520e
gnu: libmicrohttpd: Update to 0.9.52.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
2016-11-15 15:25:15 +02:00
Efraim Flashner
f5a077b10f
gnu: octave: Update to 4.2.0.
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
2016-11-15 15:21:15 +02:00
Efraim Flashner
fccab9931c
gnu: parallel: Update to 20161022.
* gnu/packages/parallel.scm (parallel): Update to 20161022.
[home-page]: Use https.
2016-11-15 11:45:53 +02:00
Efraim Flashner
6312043ca5
gnu: libcdio: Update to 0.94.
* gnu/packages/cdrom.scm (libcdio): Update to 0.94.
[home-page]: Use https.
2016-11-15 11:13:24 +02:00
Efraim Flashner
3ded2761ab
gnu: gvpe: Update to 3.0.
* gnu/packages/vpn.scm (gvpe): Update to 3.0.
2016-11-15 11:06:15 +02:00
Efraim Flashner
336f830961
gnu: cryptsetup: Update to 1.7.3.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.3.
2016-11-15 09:45:37 +02:00
Efraim Flashner
538fe01934
gnu: python-vcversioner: Update to 2.16.0.0.
* gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0.
[inputs]: Remove python-setuptools.
[properties]: New field.
(python2-vcversioner): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
2016-11-15 09:45:28 +02:00
Tobias Geerinckx-Rice
1f781865fb
gnu: fish: Update to 2.4.0.
* gnu/packages/shells.scm (fish): Update to 2.4.0.
2016-11-15 01:17:01 +01:00
Tomáš Čech
e25c904f2c
services: Require wpa-supplicant-service for connman-service.
* gnu/services/networking.scm (connman-shepherd-service): Add
  wpa-supplicant among list of requirements.
2016-11-15 00:19:23 +01:00
Tomáš Čech
2cccbc2af2
services: Add wpa-supplicant-service.
* gnu/services/networking.scm (wpa-supplicant-service): New procedure.
(wpa-supplicant-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
2016-11-15 00:19:17 +01:00
Tomáš Čech
028bf3c0b2
gnu: connman: Use localstatedir outside of store.
* gnu/packages/connman.scm (connman): Use localstatedir outside of store.
2016-11-15 00:13:29 +01:00
Efraim Flashner
8bcd6b91ff
gnu: python-jsonschema: Use 'nosetests'.
* gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check
phase with python nosetests.
[native-inputs]: Add python-nose.
[home-page]: Use https.
(python2-jsonschema)[native-inputs]: Add python2-mock.
2016-11-14 22:49:50 +02:00
Efraim Flashner
571ffdebc3
gnu: accountsservice: Update to 0.6.43.
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.
2016-11-14 21:02:10 +02:00
Ludovic Courtès
a4cb821791
gnu: guix-devel: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to commit
7ca37da855.
2016-11-14 15:39:32 +01:00
Ludovic Courtès
198eac2bca
gnu: guix: Really skip all the container tests.
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update
pattern in 'disable-container-tests' to match 'test-equal'.
2016-11-14 15:39:32 +01:00
Tobias Geerinckx-Rice
88eaed6174
gnu: libpsl: Update to 0.15.0.
* gnu/packages/web.scm (libpsl): Update to 0.15.0.
2016-11-14 14:12:50 +01:00
Efraim Flashner
7ca37da855
gnu: libinput: Enable GUI event tool.
* gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib.
[native-inputs]: Add cairo, gtk+-3.
(libinput-minimal)[native-inputs]: Only pkg-config.
2016-11-14 13:06:02 +02:00
Efraim Flashner
73bb984ec4
gnu: freedesktop.scm: Reorder modules alphabetically.
* gnu/packages/freedesktop.scm: Reorder modules alphabetically.
2016-11-14 12:15:40 +02:00
Efraim Flashner
8c5cdf5f20
gnu: libinput: Update to 1.5.1.
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.
2016-11-14 12:12:26 +02:00
Efraim Flashner
b231b057cd
gnu: wayland-protocols: Update to 1.7.
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.
2016-11-14 11:55:01 +02:00
Andy Patterson
e66f0dd232
gnu: mpv: Use lua@5.2.
* gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.
2016-11-14 09:03:55 +00:00
Alex Sassmannshausen
c91b368e96
import/cpan: Maybe coerce version to string.
* guix/import/cpan.scm (cpan-module->sexp) <version>: Test if version in
  meta is string or number.  If it is number, coerce to string.
2016-11-14 00:06:09 +01:00
Leo Famulari
d9721bcf27
gnu: readline-6.2: Fix CVE-2014-2524.
* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
2016-11-13 17:01:01 -05:00
Leo Famulari
27d7c4e93a
gnu: signify: Update to 20.
* gnu/packages/crypto.scm (signify): Update to 20.
2016-11-13 17:01:01 -05:00
Ludovic Courtès
142530178d
gnu: mailutils: Update to 3.0.
* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-11-13 21:12:32 +01:00
Efraim Flashner
d81850d438
gnu: guile-ncurses: Update to 2.1.
* gnu/packages/guile.scm (guile-ncurses): Update to 2.1.
[home-page]: Use https.
2016-11-13 22:02:05 +02:00
Tobias Geerinckx-Rice
927d850512
gnu: btrfs-progs: Update to 4.8.3.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.
2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice
917239ff99
gnu: tidy: Use ‘modify-phases’.
* gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.
2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice
3b0ac79500
gnu: protobuf: Replace dead Google Code home-page.
* gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.
2016-11-13 13:33:59 +01:00
Tobias Geerinckx-Rice
3b0f2ba46b
gnu: exfat-utils: Update to 1.2.4.
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4.
[source, home-page]: Move away from dead Google Code project.
[arguments, native-inputs]: Remove.
2016-11-13 13:33:59 +01:00
Andy Patterson
a24b56fa8d
tests: Don't check file-systems in container tests.
Hello,

The containers test was hanging for me, and this patch fixed the
problem.

--
Andy

From 945ad44acf489b7f3a398d4ab739ec2b48477502 Mon Sep 17 00:00:00 2001
From: Andy Patterson <ajpatter@uwaterloo.ca>
Date: Sat, 12 Nov 2016 22:10:01 -0500
Subject: [PATCH] tests: Don't check file-systems in container tests.

* tests/containers.scm ("call-with-container, mnt namespace"): Don't
check file-system in 'call-with-container' call.
* tests/containers.scm
("call-with-container, mnt namespace, wrong bindmount"): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-13 13:04:00 +01:00
Andy Patterson
c25a51d5c6
gnu: clisp: Use readline@6.2.
* gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-13 13:00:44 +01:00
Ludovic Courtès
2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Efraim Flashner
15abcabe4e
gnu: Add newsbeuter.
* gnu/packages/syndication.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-12 20:50:48 +02:00
Efraim Flashner
c76dab7b36
gnu: Add stfl.
* gnu/packages/ncurses.scm (stfl): New variable.
2016-11-12 20:50:47 +02:00
Alex Sassmannshausen
8883b30165
gnu: Add perl-modern-perl.
* gnu/packages/perl.scm (perl-modern-perl): New variable.
2016-11-12 18:26:28 +01:00
Leo Famulari
5c66314bd9
gnu: libtiff: Fix CVE-2016-9273.
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
2016-11-12 11:05:19 -05:00