Ricardo Wurmus
f729a4d8b2
gnu: niftilib: Simplify build phases.
...
* gnu/packages/image.scm (niftilib)[arguments]: Use make-flags instead of
replacing "configure" phase; simplify "install" phase.
2017-03-19 14:26:33 +01:00
Efraim Flashner
eba72e1716
gnu: apl: Update to 1.7.
...
* gnu/packages/apl.scm (apl): Update to 1.7.
[home-page]: Use https.
2017-03-18 21:28:20 +02:00
Christopher Allan Webber
525acb6e82
gnu: guile-8sync: Update to 0.4.2.
...
* gnu/packages/guile.scm (guile-8sync): Update to 0.4.2.
2017-03-18 12:22:13 -05:00
Taylan Ulrich Bayırlı/Kammer
57d0bdf8c6
gnu: guix: Don't ignore user's GUILE_LOAD_COMPILED_PATH.
...
* gnu/packages/package-management.scm (guix-0.12.0): Guile skips invalid .go
files since 2.0.12 so we don't need to override GUILE_LOAD_COMPILED_PATH to
prevent problems anymore.
2017-03-18 18:26:11 +01:00
Danny Milosavljevic
7601b9f7ce
gnu: wine: Update to 2.4.
...
* gnu/packages/wine.scm (wine): Update to 2.4.
2017-03-18 17:26:02 +01:00
John Darrington
21122bd79e
gnu: Add niftilib.
...
* gnu/packages/image.scm (niftilib): New variable.
2017-03-18 15:25:59 +01:00
ng0
d54db52e7f
bug#26152: [PATCH] gnu: limnoria: Update to 20170110.
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* gnu/packages/irc.scm (limnoria): Update to 20170110.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-18 11:51:21 +01:00
Danny Milosavljevic
84aac61c81
gnu: rustc: Fix process test.
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* gnu/packages/rust.scm (rustc)[arguments]: Rename 'patch-lockfile-test
to 'patch-tests. Add another substitution.
2017-03-18 10:37:02 +01:00
John Darrington
6d5f63b690
gnu: Add maxflow.
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* gnu/packages/maths.scm (maxflow): New variable.
2017-03-18 10:31:54 +01:00
John Darrington
a53d6719bc
gnu: Add itpp.
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* gnu/packages/maths.scm (itpp): New variable.
2017-03-18 10:31:50 +01:00
Tobias Geerinckx-Rice
b6bd9a79d4
gnu: emacs-slime: Update to 2.19.
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* gnu/packages/emacs.scm (emacs-slime): Update to 2.19.
2017-03-18 01:49:38 +01:00
Ben Woodcroft
55f7a27cee
gnu: ocaml-qtest: Update to 2.5.
...
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.5.
2017-03-18 09:52:29 +10:00
Marius Bakke
7c78beb33c
gnu: libbluray: Update to 1.0.0.
...
* gnu/packages/video.scm (libbluray): Update to 1.0.0.
2017-03-17 20:41:16 +01:00
Marius Bakke
715dd13d8e
gnu: libx264: Update to 20170316-2245.
...
* gnu/packages/video.scm (libx264): Update to 20170316-2245.
2017-03-17 20:41:15 +01:00
Marius Bakke
2a047d59e0
gnu: libwebp: Update to 0.6.0.
...
* gnu/packages/image.scm (libwebp): Update to 0.6.0.
[source]: Remove patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
Marius Bakke
cbef2796ed
gnu: ninja: Update to 1.7.2.
...
* gnu/packages/ninja.scm (ninja): Update to 1.7.2.
[source]: Remove patch.
* gnu/packages/patches/ninja-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
Tobias Geerinckx-Rice
039601e097
gnu: btrfs-progs: Use @dfn in description.
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* gnu/packages/linux.scm (btrfs-progs)[description]: Use @dfn.
2017-03-17 20:39:58 +01:00
Tobias Geerinckx-Rice
0d3ddd490b
gnu: btrfs-progs: Update to 4.10.1.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.1.
2017-03-17 20:39:58 +01:00
Danny Milosavljevic
893bc3f402
gnu: cargo: Use upstream cargo.
...
* gnu/packages/rust.scm (cargo): Use upstream cargo.
2017-03-17 16:48:08 +01:00
Danny Milosavljevic
b0dcb529af
gnu: rust: Update to 1.15.0.
...
* gnu/packages/rust.scm (%rust-bootstrap-binaries-version): Update to 1.14.0.
(%rust-bootstrap-binaries): Update to 1.14.0.
(rustc): Update to 1.15.0.
[arguments]: Pass "--disable-rustbuild" to configure.
2017-03-17 16:48:06 +01:00
Kei Kebreau
8f98581613
gnu: libpng-apng: Remove unnecessary call to libtool.
...
* gnu/packages/image.scm (libpng-apng)[phases]: Remove it.
2017-03-17 11:36:27 -04:00
ng0
114a325e8f
gnu: Add libpng-apng.
...
* gnu/packages/image.scm (libpng-apng): New variable.
Co-authored-by: Kei Kebreau <kei@openmailbox.org>
2017-03-17 11:25:15 -04:00
Ben Woodcroft
0a3063d640
gnu: Add ocaml-mcl.
...
* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
2017-03-17 21:43:27 +10:00
Ben Woodcroft
ba1be533ad
gnu: Add ocaml-gsl.
...
* gnu/packages/maths.scm (ocaml-gsl): New variable.
2017-03-17 21:43:25 +10:00
Ben Woodcroft
91df9eaefa
gnu: Add ocaml-csv.
...
* gnu/packages/ocaml.scm (ocaml-csv): New variable.
2017-03-17 21:43:13 +10:00
Ben Woodcroft
0c4dbdc23e
gnu: Add ocaml-sqlite3.
...
* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
2017-03-17 21:19:23 +10:00
Ricardo Wurmus
ef71ed8ffa
gnu: snakemake: Update to 3.11.2.
...
* gnu/packages/python.scm (snakemake): Update to 3.11.2.
2017-03-17 10:14:03 +01:00
Ricardo Wurmus
60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
...
Fixes <https://bugs.gnu.org/25598 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
Ricardo Wurmus
2d7c4ae3ee
gnu: r: Rename to r-minimal.
...
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
Ricardo Wurmus
f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
Ricardo Wurmus
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
Ricardo Wurmus
6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
Ricardo Wurmus
4b005c7a75
gnu: Add r-spatial.
...
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus
567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
...
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus
ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus
248f65269a
gnu: Add r-nlme.
...
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus
69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus
060c12868b
gnu: r-lattice: Move to other recommended R packages.
...
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus
e88bad6ddb
gnu: Add r-kernsmooth.
...
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus
69fddd2d6e
gnu: Add r-foreign.
...
* gnu/packages/statistics.scm (r-foreign): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus
c1999c5910
gnu: Add r-codetools.
...
* gnu/packages/statistics.scm (r-codetools): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus
a27bfb8484
gnu: Add r-cluster.
...
* gnu/packages/statistics.scm (r-cluster): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus
7489258751
gnu: Add r-class.
...
* gnu/packages/statistics.scm (r-class): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus
c7e80a7e0d
gnu: Add r-mass.
...
* gnu/packages/statistics.scm (r-mass): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus
8f0069170c
gnu: Add r-boot.
...
* gnu/packages/statistics.scm (r-boot): New variable.
2017-03-17 10:14:00 +01:00
Tobias Geerinckx-Rice
54d556bdd7
gnu: youtube-dl: Update to 2017.03.16.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.16.
2017-03-17 03:11:35 +01:00
Kei Kebreau
3078821d13
gnu: asciidoc: Use local docbook-xml package.
...
* gnu/packages/documentation.scm (asciidoc)[inputs]: Add docbook-xml.
[arguments]: Add 'make-local-docbook-xml' phase.
2017-03-16 21:35:50 -04:00
Tobias Geerinckx-Rice
f9cdf1c15b
gnu: Add knot.
...
* gnu/packages/dns.scm (knot): New variable.
2017-03-17 02:32:01 +01:00
Tobias Geerinckx-Rice
754667f0eb
gnu: Add liburcu.
...
* gnu/packages/datastructures.scm (liburcu): New variable.
2017-03-17 02:32:00 +01:00