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Author SHA1 Message Date
Ricardo Wurmus 4e0acfe5e7
gnu: r-complexheatmap: Update to 2.4.3. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.3.
 2020-08-20 21:25:34 +02:00
Ricardo Wurmus e9d2cab0bf
gnu: r-gage: Update to 2.38.3. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.38.3.
[propagated-inputs]: Add r-go-db.
 2020-08-20 21:25:34 +02:00
Ricardo Wurmus 9da4a25b33
gnu: r-annotationhub: Update to 2.20.2. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.2.
 2020-08-20 21:25:34 +02:00
Ricardo Wurmus 67f8477fb5
gnu: r-delayedarray: Update to 0.14.1. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus b414add3d1
gnu: r-annotationdbi: Update to 1.50.3. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.50.3.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus e9128480d4
gnu: r-biocviews: Update to 1.56.2. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.2.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus b828c3ea90
gnu: r-biocset: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.2.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus a27a402eba
gnu: r-experimenthub: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.2.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 1bdc770dc6
gnu: r-variancepartition: Update to 1.18.3. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.3.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 1bf630660b
gnu: r-rsubread: Update to 2.2.6. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.6.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus a20538ab7e
gnu: r-rbowtie: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 4a504b80c2
gnu: r-biocfilecache: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 82cb9a99f8
gnu: r-rbowtie2: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus a8840a04d7
gnu: r-motifstack: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 69f3b27822
gnu: r-clusterprofiler: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1.
[propagated-inputs]: Add r-rlang.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus fc1c3c6f9f
gnu: r-gosemsim: Update to 2.14.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 0827e0be36
gnu: r-oligo: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus 1c43c6fa6b
gnu: r-oligoclasses: Update to 1.50.4. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4.
 2020-08-20 21:25:29 +02:00
Tobias Geerinckx-Rice 15593de33c
gnu: bind: Update to 9.16.6 [multiple CVE fixes]. 
Fixes CVE-2020-8620, CVE-2020-8621, CVE-2020-8622, CVE-2020-8623, and
CVE-2020-8624.

* gnu/packages/dns.scm (isc-bind): Update to 9.16.6.
 2020-08-20 21:17:06 +02:00
Tobias Geerinckx-Rice 3f28ebd0ff
gnu: perl-catalyst-plugin-configloader: Update to 0.35. 
* gnu/packages/web.scm (perl-catalyst-plugin-configloader): Update to 0.35.
 2020-08-20 21:17:05 +02:00
Tobias Geerinckx-Rice a7841fc486
gnu: perl-catalyst-devel: Update to 1.41. 
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.41.
 2020-08-20 21:17:04 +02:00
Tobias Geerinckx-Rice a5526c75b8
gnu: ne: Update to 3.3.0. 
* gnu/packages/text-editors.scm (ne): Update to 3.3.0.
 2020-08-20 21:17:04 +02:00
Tobias Geerinckx-Rice 149d91814c
gnu: p11-kit: Update to 0.23.21. 
* gnu/packages/tls.scm (p11-kit): Update to 0.23.21.
 2020-08-20 21:17:03 +02:00
Ricardo Wurmus d7f578f8c2
gnu: r-pbapply: Update to 1.4-3. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-3.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 800d95fe73
gnu: r-chron: Update to 2.3-56. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-56.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 5e1c17a750
gnu: r-dplyr: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.2.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus bc438f5a8f
gnu: r-mgcv: Update to 1.8-32. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-32.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 5eb753a276
gnu: r-mass: Update to 7.3-52. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-52.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 4be3979e99
gnu: r-stanheaders: Update to 2.21.0-6. 
* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-6.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 69939ce955
gnu: r-showtext: Update to 0.9. 
* gnu/packages/cran.scm (r-showtext): Update to 0.9.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 4dcbea180d
gnu: r-haplo-stats: Update to 1.8.2. 
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.2.
[propagated-inputs]: Add r-arsenal.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus c4a48418f7
gnu: r-emmeans: Update to 1.5.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.5.0.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 88bf81c61b
gnu: r-abjutils: Update to 0.3.1. 
* gnu/packages/cran.scm (r-abjutils): Update to 0.3.1.
[propagated-inputs]: Remove r-devtools, r-furrr, r-future, r-glue, r-httr, r-progress, r-readr, r-scales, and r-tibble.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 432c62787c
gnu: r-hdf5r: Update to 1.3.3. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.3.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 74b438e563
gnu: r-hardyweinberg: Update to 1.6.6. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.6.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus c764026c26
gnu: r-jomo: Update to 2.7-2. 
* gnu/packages/cran.scm (r-jomo): Update to 2.7-2.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 4e6aa9aa6f
gnu: r-ape: Update to 5.4-1. 
* gnu/packages/cran.scm (r-ape): Update to 5.4-1.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus 677e83a927
gnu: Add r-arsenal. 
* gnu/packages/cran.scm (r-arsenal): New variable.
 2020-08-20 19:32:23 +02:00
Andreas Enge 280455809d
gnu: python-fpylll: Update to 0.5.2. 
* gnu/packages/algebra.scm (python-fpylll): Update to 0.5.2.
 2020-08-20 19:27:10 +02:00
Andreas Enge b9ef00258c
gnu: fplll: Update to 5.3.2. 
* gnu/packages/algebra.scm (fplll): Update to 5.3.2.
 2020-08-20 19:23:03 +02:00
Tobias Geerinckx-Rice d9461f688c
gnu: python-libtmux: Update to 0.8.3. 
* gnu/packages/tmux.scm (python-libtmux): Update to 0.8.3.
 2020-08-20 18:40:45 +02:00
Tobias Geerinckx-Rice 37e64053b3
gnu: vis: Run most tests. 
* gnu/packages/text-editors.scm (vis)[arguments]: Add ‘unpack-test-suite’
and ‘set-up-tests’ phase.  Run the tests after wrapping vis.
[native-inputs]: Add vis-test origin.
 2020-08-20 18:40:44 +02:00
Tobias Geerinckx-Rice d198eca0b3
gnu: vis: Fetch sources from git. 
* gnu/packages/text-editors.scm (vis)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2020-08-20 18:40:43 +02:00
Tobias Geerinckx-Rice c82cf31def
gnu: vis: Update to 0.6. 
* gnu/packages/text-editors.scm (vis): Update to 0.6.
 2020-08-20 18:40:43 +02:00
Michael Rohleder 25a6846462
gnu: emacs-browse-at-remote: Update to 0.14.0. 
* gnu/packages/emacs-xyz.scm (emacs-browse-at-remote): Update to 0.14.0.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-20 19:27:32 +03:00
Michael Rohleder dfe4d0134b
gnu: emacs-perspective: Update to 2.10. 
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.10.
(arguments): Run tests suite.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-20 19:27:32 +03:00
Michael Rohleder c00ebfd6d7
gnu: emacs-ob-restclient: Update to 0.02-2.f7449b2. 
* gnu/packages/emacs-xyz.scm (emacs-ob-restclient): Update to 0.02-2.f7449b2.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-20 19:26:08 +03:00
Michael Rohleder fba499cb07
gnu: emacs-visual-regexp: Update to 1.1.2. 
* gnu/packages/emacs-xyz.scm (emacs-visual-regexp): Update to 1.1.2.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-20 19:09:54 +03:00
Nicolas Goaziou e6e5b797f3
gnu: keepassxc: Update to 2.6.1. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.6.1.
 2020-08-20 16:07:51 +02:00
Nicolas Goaziou 19da905921
gnu: emacs-org-superstar: Update to 1.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.4.0.
 2020-08-20 14:08:32 +02:00