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Author SHA1 Message Date
Lars-Dominik Braun
9f882daf11
gnu: Add python-pylems. 
* gnu/packages/python-science.scm (python-pylems): New variable.
 2023-03-21 13:56:47 +01:00
Lars-Dominik Braun
4e5001f915
gnu: Add python-markdown-strings. 
* gnu/packages/python-xyz.scm (python-markdown-strings): New variable.
 2023-03-21 13:56:44 +01:00
Ricardo Wurmus
31cdb03704
gnu: r-tibble: Update to 3.2.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.2.1.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
38fc19c4f5
gnu: r-keras: Update to 2.11.1. 
* gnu/packages/cran.scm (r-keras): Update to 2.11.1.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
2200572e25
gnu: r-intervals: Update to 0.15.3. 
* gnu/packages/cran.scm (r-intervals): Update to 0.15.3.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
ab179ed1d8
gnu: r-maldiquant: Update to 1.22.1. 
* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.1.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
2fbc674039
gnu: r-metafor: Update to 4.0-0. 
* gnu/packages/cran.scm (r-metafor): Update to 4.0-0.
[propagated-inputs]: Add r-numderiv.
[native-inputs]: Add r-r-rsp.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
328cadff99
gnu: r-qgraph: Update to 1.9.4. 
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.4.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
4127151a5c
gnu: r-ggfortify: Update to 0.4.16. 
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.16.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
1cea095e55
gnu: r-sf: Update to 1.0-12. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-12.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
395ef48520
gnu: r-glmmtmb: Update to 1.1.6. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.6.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
b98cd00976
gnu: r-fnn: Update to 1.1.3.2. 
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.2.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
f91a6fb4da
gnu: r-truncnorm: Update to 1.0-9. 
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-9.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
c23cc82f50
gnu: r-partykit: Update to 1.2-19. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-19.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus
766479ca25
gnu: r-nmf: Update to 0.26. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.26.
 2023-03-21 12:31:30 +01:00
Pierre Neidhardt
088a3d4c34
gnu: sbcl-history-tree: Update to 0.1.1. 
* gnu/packages/lisp-xyz.scm (sbcl-history-tree): Update to 0.1.1.
 2023-03-21 10:04:55 +01:00
Ricardo Wurmus
326be9abff
gnu: r-singlecellexperiment: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.20.1.
 2023-03-21 09:36:15 +01:00
Ricardo Wurmus
fa048ce50e
gnu: r-variancepartition: Update to 1.28.9. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.9.
 2023-03-21 09:36:15 +01:00
Ricardo Wurmus
481abed581
gnu: r-biocparallel: Update to 1.32.6. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.6.
 2023-03-21 09:36:15 +01:00
Petr Hodina
ac6e5d5b80
gnu: Add mygnuhealth. 
* gnu/packages/medical.scm (mygnuhealth): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Co-authored-by: Morgan Smith <Morgan.J.Smith@outlook.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-20 23:46:16 -04:00
Kaelyn Takata
b4fb941957
gnu: zabbix-agentd: Update to 6.0.14. 
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 6.0.14.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-20 23:10:15 -04:00
Simon South
e19d215ec9
gnu: tesseract-ocr: Use standard TESSDATA_PREFIX. 
* gnu/packages/ocr.scm (tesseract-ocr-tessdata-fast): Install data to
'share/tessdata' prefix rather than 'share/tesseract-ocr/tessdata'.
(tesseract-ocr) [arguments]: Delete adjust-TESSDATA_PREFIX-macro.
Adjust installation prefix in install-minimal-tessdata phase.
[native-search-paths]: Search for files under share/tessdata directly.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-20 22:19:35 -04:00
Maxim Cournoyer
34e4761a0f
gnu: emacs-magit-gerrit: Update to 0.4-1.a975215. 
* gnu/packages/emacs-xyz.scm (emacs-magit-gerrit): Update to 0.4-1.a975215.
 2023-03-20 21:07:10 -04:00
Maxim Cournoyer
b019c16b03
gnu: emacs-magit: Update to 3.3.0-4.a760dd1. 
This update resolves a problem where configuring a remote would result in the
error "Symbol’s function definition is void:
transient--with-suspended-override".

* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.3.0-4.a760dd1.
 2023-03-20 21:07:10 -04:00
Maxim Cournoyer
35dcd38fc3
gnu: emacs-transient: Update to 0.3.7-1.0ae0de4. 
* gnu/packages/emacs-xyz.scm (emacs-transient): Update to 0.3.7-1.0ae0de4.
[propagated-inputs]: Remove emacs-dash; add emacs-compat.
 2023-03-20 21:07:09 -04:00
Ricardo Wurmus
d2ae00530b
gnu: lepton-eda: Update to 1.9.18-20220529. 
* gnu/packages/engineering.scm (lepton-eda): Update to 1.9.18-20220529.
[inputs]: Add guile-readline.
[arguments]: Adjust build phase 'fix-dynamic-link; add build phase 'fix-tests.
 2023-03-21 00:02:59 +01:00
Ricardo Wurmus
fa0c6defeb
gnu: Add ctrlr. 
* gnu/packages/music.scm (ctrlr): New variable.
 2023-03-21 00:02:59 +01:00
Andreas Enge
30f4b3a7e8
gnu: openjdk10: Apply patch again. 
This partially reverts commit 7636c49b45
where the patch was dropped.

* gnu/packages/java.scm (openjdk10)[source]: Apply patch.
 2023-03-20 19:00:02 +01:00
Mădălin Ionel Patrașcu
2336d5f57a
gnu: Add r-annotationhubdata. 
* gnu/packages/bioconductor.scm (r-annotationhubdata): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
40b79eafee
gnu: Add r-affylmgui. 
* gnu/packages/bioconductor.scm (r-affylmgui): New variable.
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
628c22ec9e
gnu: Add r-tkrplot. 
* gnu/packages/cran.scm (r-tkrplot): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
9f09ac6b21
gnu: Add r-affyplm. 
* gnu/packages/bioconductor.scm (r-affyplm): New variable.
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
284b5eca60
gnu: Add r-affyilm. 
* gnu/packages/bioconductor.scm (r-affyilm): New variable.
 2023-03-20 18:25:10 +01:00
Efraim Flashner
f80215c7c4
gnu: python-google-api-client: Update to 1.12.8. 
* gnu/packages/python-web.scm (python-google-api-client): Update to
1.12.8.
[arguments]: Remove custom phase to adjust setup.py.
[native-inputs]: Remove python-oauth2client, python-uritemplate. Move
python-httplib2, python-six ...
[propagated-inputs]: ... here. Add python-google-api-core-1,
python-google-auth-1, python-google-auth-httplib2, python-uritemplate-3.
 2023-03-20 18:27:45 +02:00
Efraim Flashner
f541989f95
gnu: python-googleapis-common-protos: Update to 1.56.4. 
* gnu/packages/python-web.scm (python-googleapis-common-protos): Update
to 1.56.4.
[arguments]: Enable test suite.
 2023-03-20 18:27:44 +02:00
Efraim Flashner
86f1a3643e
gnu: Add python-google-api-core-1. 
* gnu/packages/python-web.scm (python-google-api-core-1): New variable.
 2023-03-20 18:27:44 +02:00
Efraim Flashner
e0deaf0a85
gnu: Add python-google-auth-1. 
* gnu/packages/python-web.scm (python-google-auth-1): New variable.
 2023-03-20 18:27:44 +02:00
Efraim Flashner
a39aac3352
gnu: Add python-google-auth-httplib2. 
* gnu/packages/python-web.scm (python-google-auth-httplib2): New
variable.
 2023-03-20 18:27:44 +02:00
Efraim Flashner
6ec585fb3e
gnu: Add python-uritemplate-3. 
* gnu/packages/python-web.scm (python-uritemplate-3): New variable.
 2023-03-20 18:27:43 +02:00
Efraim Flashner
0f4800e93a
gnu: python-httplib2: Update to 0.15.0. 
* gnu/packages/python-web.scm (python-httplib2): Update to 0.15.0.
[source]: Download using git.
[arguments]: Add a phase to adjust the test package version
requirements.
[native-inputs]: Add python-flake8, python-future, python-mock,
python-pytest, python-pytest-cov, python-pytest-forked,
python-pytest-randomly, python-pytest-timeout, python-pytest-xdist,
python-six.
[home-page]: Switch to new upstream homepage.
 2023-03-20 18:27:43 +02:00
Efraim Flashner
9d93c0c789
gnu: zig: Increase max-silent-time. 
* gnu/packages/zig.scm (zig-0.10)[properties]: Set max-silent-time to 3
hours.
 2023-03-20 18:27:40 +02:00
Ricardo Wurmus
5dcbe80da8
gnu: Add transanno. 
* gnu/packages/bioinformatics.scm (transanno): New variable.
 2023-03-20 17:22:33 +01:00
Ricardo Wurmus
6a1638fe97
gnu: Add rust-autocompress-0.2. 
* gnu/packages/crates-io.scm (rust-autocompress-0.2): New variable.
 2023-03-20 17:22:33 +01:00
Ricardo Wurmus
cc2f5cd998
gnu: Add rust-temp-testdir-0.2. 
* gnu/packages/crates-io.scm (rust-temp-testdir-0.2): New variable.
 2023-03-20 17:22:33 +01:00
Ricardo Wurmus
50e63a675b
gnu: Add rust-bio-0.41. 
* gnu/packages/crates-io.scm (rust-bio-0.41): New variable.
 2023-03-20 17:22:33 +01:00
Maxim Cournoyer
45fd01ac5d
gnu: ruby-rugged: Update to 1.6.2-0.6379f23 and enable tests. 
* gnu/packages/ruby.scm (ruby-rugged): Update to 1.6.2-0.6379f23.
[source]: Fetch via git.
[arguments]: Enable tests.  Add #:phases.
[native-inputs]: Add git-minimal/pinned.  Remove ruby-minitest and ruby-pry.
 2023-03-20 11:12:18 -04:00
Maxim Cournoyer
008a2f1803
gnu: python-django-rq: Update to 2.7.0. 
* gnu/packages/django.scm (python-django-rq): Update to 2.7.0.
[arguments]: Replace django-admin.py with django-admin in check phase.
 2023-03-20 08:38:20 -04:00
Maxim Cournoyer
10d5535c78
gnu: python-aioredis: Deprecate by python-redis. 
* gnu/packages/databases.scm (python-aioredis): Mark as deprecated by
python-redis.
 2023-03-20 08:38:19 -04:00
Maxim Cournoyer
c3b110b27a
gnu: python-fakeredis: Update to 2.10.1 and enable tests. 
* gnu/packages/databases.scm (python-fakeredis): Update to 2.10.1.
[source]: Fetch via git.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests.  Add #:phases.
[native-inputs]: New field.
[propagated-inputs]: Remove python-aioredis and python-packaging.
[home-page]: Update URL.
 2023-03-20 08:38:19 -04:00
Maxim Cournoyer
1a902eb21a
gnu: python-redis: Update to 4.5.2 and enable tests. 
* gnu/packages/databases.scm (python-redis): Update to 4.5.2.
[source]: Fetch from git.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests.  Add #:test-flags and #:phases.
[native-inputs]: Add field.
[propagated-inputs]: Add field.
[home-page]: Update URL.
 2023-03-20 08:38:07 -04:00