Commit graph

2757 commits

Author SHA1 Message Date
Marius Bakke
00a85828b0
gnu: python-aiohttp: Update to 3.7.3.
* gnu/packages/patches/python-aiohttp-3.6.2-no-warning-fail.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-web.scm (python-aiohttp)[source](patches): Remove.
[arguments]: Use UTIME instead of calling out to 'touch'.  Don't delete
now-working tests; but disable some new ones.  Replace the 'check' phase.
[propagated-inputs]: Add PYTHON-TYPING-EXTENSIONS.
[native-inputs]: Remove PYTHON-PYTEST-RUNNER, PYTHON-PYTEST-XDIST,
PYTHON-PYTEST-TIMEOUT, and PYTHON-PYTEST-FORKED.  Add PYTHON-PYTEST and
PYTHON-RE-ASSERT.
2020-11-26 21:00:32 +01:00
Jesse Gibbons
81fbe03b50
gnu: openssh: Fix ssh-copy-id.
* gnu/packages/patches/openssh-fix-ssh-copy-id.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-11-25 22:09:28 -05:00
Tobias Geerinckx-Rice
8b6ce47ccc
gnu: mupdf: Use only dynamic linking.
* gnu/packages/pdf.scm (mupdf)[source]: Add patch.
[arguments]: Build and find the shared library.
(zathura-pdf-mupdf)[arguments]: Add a 'remove-libmupdfthird.a-requirement
phase to deal with the now-missing static one.
* gnu/packages/patches/mupdf-fix-linkage.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-11-24 15:58:49 +01:00
Tobias Geerinckx-Rice
ba902a1598
gnu: eigen: Add upstream bugfix patch.
This fixes the build of nanopolish, imp, and others.

Reported by apteryx in #guix.

* gnu/packages/algebra.scm (eigen)[source]: Add patch.
* gnu/packages/patches/eigen-remove-openmp-error-counting.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23 19:22:31 +01:00
Efraim Flashner
b1aac582ca
gnu: python-pydot: Run tests.
* gnu/packges/graphviz.scm (python-pydot)[source]: Add patch.
[arguments]: Override check phase.
[native-inputs]: Add graphviz.
* gnu/packages/patches/python-pydot-regression-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2020-11-23 15:43:36 +02:00
Tobias Geerinckx-Rice
2bf502138c
gnu: lsof: Make test failures fatal.
* gnu/packages/lsof.scm (lsof)[source]: Add patch to make test suite
failures stop the build.
* gnu/packages/patches/lsof-fatal-test-failures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23 05:44:10 +01:00
Brett Gilio
0ada181aa1
gnu: ocaml-cairo2: Patch test phase.
* gnu/local.mk (ocaml-cairo2-caml_ba_array_fix.patch): Add ref.
* gnu/packages/ocaml.scm (ocaml-cairo2): Utilize patch.
* gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Add file.
2020-11-22 21:02:59 -06:00
Tobias Geerinckx-Rice
155e3c775a
gnu: xpra: Update to 4.0.5.
* gnu/packages/xorg.scm (xpra): Update to 4.0.5.
[source]: Remove xpra-4.0.4-norequests.patch.
* gnu/packages/patches/xpra-4.0.4-norequests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-21 00:29:38 +01:00
Mathieu Othacehe
17d9a91e6b
image: Add pinebook-pro support.
* gnu/system/images/pinebook-pro.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/ci.scm (%guix-system-images): Add pinebook-pro-barebones-raw-image.
2020-11-20 17:00:27 +01:00
Tobias Geerinckx-Rice
c18803f28d
gnu: gajim: Honour $GAJIM_PLUGIN_PATH.
This allows Gajim to find plug-ins installed with Guix.
Reported at <http://issues.guix.gnu.org/44730>.

However, at the time of pushing both packaged plug-ins (gajim-omemo and
gajim-openpgp) require an unstable version of Gajim and will not load.

* gnu/packages/messaging.scm (gajim)[arguments]: Replace the
‘add-plugin-dirs’ substitution phase with a...
[source]: ...patch that won't silently break in the future.
* gnu/packages/patches/gajim-honour-GAJIM_PLUGIN_PATH.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-11-19 22:16:18 +01:00
Simon South
fa268b28e1
gnu: bitcoin-core: Update to 0.20.1.
* gnu/packages/finance.scm (bitcoin-core): Update to 0.20.1.
[source]: Remove obsolete patch.
[native-inputs]: Add autoconf, automake and libtool.
[inputs]: Remove protobuf.
[arguments]: Add "set-no-git-flag" phase to indicate the build is not taking
place within a git repository.
* gnu/packages/patches/bitcoin-core-python-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-11-18 08:44:43 +00:00
Maxim Cournoyer
129b9b16d9
Merge remote-tracking branch 'origin/version-1.2.0' into master
Conflicts:
	gnu/packages/bioinformatics.scm

The python-pysam package fixed in master was kept instead of the update done
in the version-1.2.0 branch.
2020-11-17 18:00:28 -05:00
Eric Bavier
3aec121e95
gnu: tomb: Update to 2.8.
Fixes CVE-2020-28638.

* gnu/packages/crypto.scm (tomb): Update to 2.8
[source]: Remove obsolete patch.
* gnu/packages/patches/tomb-fix-errors-on-open.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-17 09:52:04 -06:00
Danny Milosavljevic
f2c6375449
gnu: gcc-vc4: Update to commit 0fe4b83897341742f9df65797474cb0feab4b377.
* gnu/packages/patches/gcc-6-fix-buffer-size.patch: New file.
* gnu/packages/patches/gcc-6-fix-isl-includes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/embedded.scm (gcc-vc4): Update to commit
0fe4b83897341742f9df65797474cb0feab4b377.
[source]: Add the patches from above.
2020-11-16 15:02:48 +01:00
Tobias Geerinckx-Rice
b91e0a5a14
gnu: scribus: Update to 1.5.6.
* gnu/packages/scribus.scm (scribus): Update to 1.5.6.
[source]: Remove patch.
[inputs]: Substitute python for python-2.
* gnu/packages/patches/scribus-1.5.5-poppler-0.86-build-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-16 04:11:46 +01:00
Tobias Geerinckx-Rice
80817b5098
gnu: multipath-tools: Update to 0.8.5.
* gnu/packages/linux.scm (multipath-tools): Update to 0.8.5.
[source]: Remove patch.
[arguments]: Add a ‘skip-failing-tests’ phase.
* gnu/packages/patches/multipath-tools-sans-systemd.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-11-15 00:12:12 +01:00
Tobias Geerinckx-Rice
2c560aa217
gnu: perl-www-curl: Fix build with curl@7.69.1.
* gnu/packages/web.scm (perl-www-curl)[source]:
Add perl-www-curl-fix-struct-void.patch.
* gnu/packages/patches/perl-www-curl-remove-symbol.patch: Update.
* gnu/packages/patches/perl-www-curl-fix-struct-void.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-11-15 00:12:11 +01:00
Ludovic Courtès
ae10ec441a
gnu: glib: Graft patch to detect changes to the installed applications.
Fixes <https://bugs.gnu.org/35594>.
Reported by sirgazil <sirgazil@zoho.com> and others.

* gnu/packages/patches/glib-appinfo-watch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/glib.scm (glib)[replacement]: New field.
(glib-with-gio-patch): New variable.
(glib-with-documentation): Use 'package/inherit'.
2020-11-13 09:13:56 +01:00
Ludovic Courtès
07914def98
Merge branch 'version-1.2.0' 2020-11-12 10:47:25 +01:00
Simon Josefsson
29cf85b857
gnu: oath-toolkit: Update to 2.6.3.
* gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.3.
[source]: Remove obsolete patches.
* gnu/packages/patches/oath-toolkit-glibc-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-11-10 21:19:03 -05:00
Simon South
6f4c9ff6ec
gnu: sdcc: Remove non-free code.
* gnu/packages/sdcc.scm (sdcc)[source]: Add snippet to remove bundled non-free
source code.
Add patch to disable use of non-free code in build scripts and compiler and
update documentation to match.
* gnu/packages/patches/sdcc-disable-non-free-code.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-11-10 22:32:13 +01:00
Ludovic Courtès
8515ea12d2
gnu: audiofile: Shorten patch file names.
At least 'audiofile-division-by-zero-BlockCodec-runPull.patch' could end
up not being included in a tarball.

* gnu/packages/patches/audiofile-Check-the-number-of-coefficients.patch:
Rename to...
* gnu/packages/patches/audiofile-check-number-of-coefficients.patch:
... this.
* gnu/packages/patches/audiofile-division-by-zero-BlockCodec-runPull.patch:
Rename to...
* gnu/packages/patches/audiofile-division-by-zero.patch: ....this.
* gnu/packages/patches/audiofile-signature-of-multiplyCheckOverflow.patch:
Rename to...
* gnu/packages/patches/audiofile-function-signature.patch: ... this.
* gnu/packages/patches/audiofile-Fix-multiply-overflow-sfconvert.patch:
Rename to....
* gnu/packages/patches/audiofile-multiply-overflow.patch: ... this.
* gnu/packages/patches/audiofile-Fix-overflow-in-MSADPCM-decodeSam.patch:
Rename to...
* gnu/packages/patches/audiofile-overflow-in-MSADPCM.patch: ... this.
* gnu/packages/audio.scm (audiofile)[source]: Adjust accordingly.
* gnu/local.mk (dist_patch_DATA): Likewise.
2020-11-10 17:49:14 +01:00
Ludovic Courtès
74361d3ee8
gnu: python2-pygobject@2: Shorten patch file name.
The file would not be included in the tarball produced by "make dist"
because its name was too long.

* gnu/packages/patches/python2-pygobject-2-gi-info-type-error-domain.patch:
Rename to...
* gnu/packages/patches/python2-pygobject-2-deprecation.patch: ... this.
* gnu/packages/glib.scm (python2-pygobject-2)[source]: Adjust accordingly.
* gnu/local.mk (dist_patch_DATA): Likewise.
2020-11-10 16:43:59 +01:00
Marius Bakke
cb9a58aead
gnu: Add ublock-origin-chromium.
* gnu/packages/browser-extensions.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2020-11-08 18:21:16 +01:00
Marius Bakke
d7a295b24b
Add (gnu build chromium-extension).
* gnu/build/chromium-extension.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2020-11-08 18:21:15 +01:00
Efraim Flashner
02f5ee01c9
gnu: libffi: Fix building on powerpc.
* gnu/packages/libffi.scm (libffi)[inputs]: New field.
[arguments]: Add 'apply-patch' phase when targeting PowerPC.
* gnu/packages/patches/libffi-3.3-powerpc-fixes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-11-07 11:31:39 +01:00
raingloom
d814246e2e
gnu: Add yggdrasil.
* gnu/packages/networking.scm (yggdrasil): New variable.
* gnu/packages/patches/yggdrasil-extra-config.patch: New file.
* gnu/local.mk (dist_PATCH_DATA): Add it.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-11-05 18:44:20 +01:00
Marius Bakke
867e3830e6
gnu: ungoogled-chromium: Add search path for installed extensions.
* gnu/packages/patches/ungoogled-chromium-extension-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%guix-patches): New variable.
(ungoogled-chromium-snippet): Apply %GUIX-PATCHES.
(ungoogled-chromium)[arguments]: Don't hard-code extensions directory.
[native-search-paths]: New field.
2020-11-05 02:20:24 +01:00
Vitaliy Shatrov
95024494f3
gnu: Add bsd-games.
* gnu/packages/games.scm (bsd-games): New variable.

New patches, taken from Arch and Debian:
* gnu/packages/patches/bsd-games-2.17-64bit.patch
* gnu/packages/patches/bsd-games-bad-ntohl-cast.patch
* gnu/packages/patches/bsd-games-gamescreen.h.patch
* gnu/packages/patches/bsd-games-getline.patch
* gnu/packages/patches/bsd-games-null-check.patch
* gnu/packages/patches/bsd-games-number.c-and-test.patch
* gnu/packages/patches/bsd-games-prevent-name-collisions.patch
* gnu/packages/patches/bsd-games-stdio.h.patch

New patches with our customizations (configure-config built after Arch's):
* gnu/packages/patches/bsd-games-add-configure-config.patch
* gnu/packages/patches/bsd-games-add-wrapper.patch
* gnu/packages/patches/bsd-games-dont-install-empty-files.patch

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-11-04 15:15:47 +01:00
Guillaume Le Vaillant
c94367eaaf
gnu: sbcl-geco: Fix build.
* gnu/packages/patches/sbcl-geco-fix-organism-class.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lisp-xyz.scm (sbcl-geco)[source]: Use it.
2020-10-31 18:01:00 +01:00
Danny Milosavljevic
c298c8896c
gnu: Add bcm2835.
* gnu/packages/raspberry-pi.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2020-10-29 12:39:57 +01:00
Hartmut Goebel
b4941e30e3
gnu: kpackage: Fix build errors in dependent packages.
Fix build errors in dependent packages if PREFIX is different from ECM's
PREFIX - which is the case in Guix.  See <https://bugs.kde.org/424483> for
details.

* gnu/packages/patches/plasma-framework-fix-KF5PackageMacros.cmake.patch: New
  file.
* gnu/local.mk (dist_patch_DATA) Add it.
* packages/kde-frameworks.scm (package)[source]: Use this patch.
2020-10-27 20:14:05 +01:00
Hartmut Goebel
e3908ec5fb
gnu: plasma-framework: Fix build errors in dependent packages.
Fix build errors in dependent packages if PREFIX is different from ECM's
PREFIX - which is the case in Guix.  See <https://bugs.kde.org/424483> for
details.

* gnu/packages/patches/plasma-framework-fix-KF5PlasmaMacros.cmake.patch: New
  file.
* gnu/local.mk (dist_patch_DATA) Add it.
* packages/kde-frameworks.scm (plasma-framework)[source]: Use this patch.
2020-10-27 20:14:05 +01:00
Ludovic Courtès
f161bd2cd7
gnu: Remove unused patch.
This patch was unused since commit
e4070d404d.

* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-10-26 22:56:30 +01:00
Ludovic Courtès
ab96f929c6
gnu: python-robotframework: Shorten patch file name.
* gnu/packages/patches/python-robotframework-honor-source-date-epoch.patch:
Rename to...
* gnu/packages/patches/python-robotframework-source-date-epoch.patch:
... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-robotframework)[source]: Likewise.
2020-10-26 22:56:29 +01:00
Malte Frank Gerdes
d1ecb3bded
gnu: benchmark: Update to 1.5.2
* gnu/packages/benchmark.scm (benchmark): Update to 1.5.2
[native-inputs]: Add googletest-source.
[arguments]: Add phase 'unpack-googletest.
* gnu/packages/patches/benchmark-unbundle-googletst.patch: Delete file.
* gnu/packages/local.mk: Remove benchmark-unbundle-googletest.patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-26 22:56:29 +01:00
Ludovic Courtès
e33c4286eb
gnu: gdb: Add version 10.1.
* gnu/packages/gdb.scm (gdb-9.2): Rename to...
(gdb-10): ... this, and upgrade to 10.1.
[inputs]: New field.
(gdb-minimal): Adjust accordingly.
* gnu/packages/patches/gdb-hurd.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-10-26 22:56:28 +01:00
Christopher Baines
a9291a28b2
gnu: netcdf: Update to 4.7.4.
This will fix an issue building qgis.

* gnu/packages/maths.scm (netcdf): Update to 4.7.4.
[source]: Remove the netcdf-tst_h_par.patch, also change the naming of the
source tarball, as the name seems to have changed for recent releases.
[inputs]: Update hdf5 and add curl.
* gnu/packages/patches/netcdf-tst_h_par.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove deleted patch.
2020-10-26 15:57:27 +00:00
Efraim Flashner
d24e37f36e
gnu: rcs: Update to 5.10.0.
* gnu/packages/version-control.scm (rcs): Update to 5.10.0.
[source]: Update patches.
[arguments]: Remove field.
* gnu/packages/patches/rcs-5.9.4-noreturn.patch: Remove file.
* gnu/packages/patches/rcs-5.10.0-no-stdin.patch: Add file.
* gnu/local.mk (dist_patch_DATA): Register changes.
2020-10-23 17:45:55 +03:00
Malte Frank Gerdes
cad55e91fd
gnu: openocd: Update to 9a877a83a1c8b1f105cdc0de46c5cbc4d9e8799e.
* gnu/packages/embedded.scm (openocd): Update to 9a877a83a1c8b1f105cdc0de46c5cbc4d9e8799e.
[version]: Substitute release with current master.
[source]: Remove openocd-nrf52.patch
[arguments]: Replace bootstrap build phase.

* gnu/local.mk: Remove openocd-nrf52.patch.
* gnu/packages/patches/openocd-nrf52.patch: Remove file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-22 17:10:25 +02:00
Raghav Gururajan
c87646400d
gnu: Add farstream.
* gnu/packages/freedesktop.scm (farstream): New variable.
* gnu/packages/patches/farstream-make.patch: New file.
* gnu/local.mk (dist_PATCH_DATA): Add it.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-10-20 00:21:31 +02:00
Marius Bakke
7f79358def
gnu: LLVM, Clang: Add 11.0.0.
* gnu/packages/patches/clang-11.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/llvm.scm (llvm-11, clang-runtime-11, clang-11,
clang-toolchain-11): New variables.
2020-10-19 00:12:31 +02:00
Lars-Dominik Braun
21fdf429a7
gnu: xpra: Fix HTML server
* gnu/packages/patches/xpra-4.0.4-norequests.patch: Add file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (xpra)[patches]: Apply it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-10-17 22:40:18 +02:00
Julien Lepiller
aea459a504
gnu: unison: Build with ocaml-4.09.
* gnu/packages/ocaml.scm (unison)[sources]: Add an upstream patch.
[native-inputs]: Use ocaml-4.09.
* gnu/packages/patches/unison-fix-ocaml-4.08.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-10-15 17:59:18 +02:00
Oleg Pykhalov
4b0e08beb2
gnu: Add nginx-socket-cloexec.
* gnu/packages/patches/nginx-socket-cloexec.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add this.
* gnu/packages/web.scm (nginx-socket-cloexec): New variable.
2020-10-14 23:41:26 +03:00
Marius Bakke
58af4c9621
Revert "gnu: python-chardet: Enable tests."
This causes too many rebuilds for the master branch.

This reverts commit 331aaf5280.
2020-10-14 00:54:17 +02:00
Lars-Dominik Braun
331aaf5280
gnu: python-chardet: Enable tests.
* gnu/packages/python-xyz.scm (python-chardet) [source]: Add upstream patch.
[arguments]: Remove.
* gnu/packages/patches/python-chardet-3.0.4-pytest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <marius@gnu.org>
2020-10-13 23:36:43 +02:00
Tobias Geerinckx-Rice
0e5968e49a
gnu: knot: Update to 3.0.1.
* gnu/packages/dns.scm (knot): Update to 3.0.1.
[source]: Remove patch.
* gnu/packages/patches/knot-test_net_shortwrite-ensure-connection.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-10-13 15:02:44 +02:00
Julien Lepiller
ec82d58526
gnu: libcanberra: Fix crashes on wayland.
* gnu/packages/patches/libcanberra-wayland-crash.patch: New file.
* gnu/packages/libcanberra.scm (libcanberra): Add it.
* gnu/local.mk (dist_PATCH_DATA): Add it.
2020-10-12 21:49:23 +02:00
Marius Bakke
9ac212cbae
gnu: folly: Remove reference to missing patch.
The patch is unnecessary because tests are disabled.
This is a follow-up to 5b548a1ee4.

* gnu/packages/cpp.scm (folly)[source](patches): Remove.
* gnu/local.mk (dist_patch_DATA): Remove missing patch.
2020-10-10 23:39:16 +02:00