Commit graph

82434 commits

Author SHA1 Message Date
Maxim Cournoyer ff80e775dc
gnu: go-github-com-gdamore-tcell: Correct license to Apache 2.0.
* gnu/packages/golang.scm (go-github-com-gdamore-tcell)
[license]: Correct from Expat to Apache 2.0.
2021-08-30 14:55:12 -04:00
Maxime Devos a3bfe953d2
build/jami-service: Fix range ends in account-fingerprint-rx.
This broke compilation of Guix with guile@3.0.2 with:

  In procedure make-regexp: Invalid range end

The fix is to replace [0-9A-f] with [0-9A-Fa-f].

* gnu/build/jami-service.scm (account-fingerprint-rx): Correct regexp.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-30 14:09:32 -04:00
Ricardo Wurmus 7712154ccb
gnu: Add python-coolbox.
* gnu/packages/bioinformatics.scm (python-coolbox): New variable.
2021-08-30 18:29:57 +02:00
Ricardo Wurmus 0d2371d215
gnu: Add python-voila.
* gnu/packages/jupyter.scm (python-voila): New variable.
2021-08-30 18:29:57 +02:00
Ricardo Wurmus c9aee89abf
gnu: python-scikit-learn: Update to 0.24.2.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.2.
[arguments]: Remove trailing #t.
2021-08-30 18:29:57 +02:00
Ricardo Wurmus d3364b9c37
gnu: python-anndata: Fetch sources from git.
* gnu/packages/python-xyz.scm (python-anndata)[source]: Fetch from git to
include test data.
[arguments]: Enable tests.  Do not let setuptools_scm guess the version.
2021-08-30 18:29:57 +02:00
Ricardo Wurmus b105655670
gnu: python-scanpy: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.8.1.
[arguments]: Bulid with flit; update list of broken tests.
[native-inputs]: Add python-flit and python-anndata:source.
2021-08-30 18:29:57 +02:00
Ricardo Wurmus 105d8196be
gnu: Add python-jupyter-server.
* gnu/packages/jupyter.scm (python-jupyter-server): New variable.
2021-08-30 18:29:57 +02:00
Ricardo Wurmus 5766296a16
gnu: Add python-anyio.
* gnu/packages/python-xyz.scm (python-anyio): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus 76b5a14ad5
gnu: Add python-pytest-mock-3.
* gnu/packages/check.scm (python-pytest-mock-3): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus c7d5e1a24c
gnu: Add python-pytest-tornasync.
* gnu/packages/python-check.scm (python-pytest-tornasync): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus 43a6152432
gnu: Add python-pytest-console-scripts.
* gnu/packages/python-check.scm (python-pytest-console-scripts): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus d84ead8174
gnu: Add python-dna-features-viewer.
* gnu/packages/bioinformatics.scm (python-dna-features-viewer): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus abe1890a57
gnu: Add python-svgutils.
* gnu/packages/python-xyz.scm (python-svgutils): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus e85b35070c
gnu: Add python-pybbi.
* gnu/packages/bioinformatics.scm (python-pybbi): New variable.
2021-08-30 18:29:56 +02:00
Leo Prikler b8926ca617
gnu: wine: Update to 6.16.
* gnu/packages/wine.scm (wine): Update to 6.16.
2021-08-30 18:20:07 +02:00
Denis 'GNUtoo' Carikli 7c3cefde5a
gnu: Add h-client.
* gnu/packages/hardware.scm (h-client): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-30 18:20:07 +02:00
Leo Prikler 0732870631
gnu: wine: Update to 6.14.
* gnu/packages/wine.scm (wine): Update to 6.14.
[#:phases]: Patch Makefile to correctly locate ntdll.so.
(wine64)[#:phases]: Likewise.
2021-08-30 17:31:09 +02:00
Xinglu Chen b12d856da9
gnu: Add ocaml-odoc-parser.
* gnu/packages/ocaml.scm (ocaml-odoc-parser): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-30 14:40:18 +02:00
Xinglu Chen 0508622848
build-system: chicken: Add 'egg-uri' procedure.
Once Chicken 6 gets released, we can just adjust the URL in the ‘egg-uri’
procedure, instead of having to change the URL for all the Chicken packages.
Making things a little more future-proof.

* guix/build-system/chicken.scm (egg-uri): New procedure.
* guix/import/egg.scm (egg-source-url): Adjust accordingly.
(egg->guix-package): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-30 14:38:50 +02:00
Ludovic Courtès 99160bc713
gnu: scrot: Update to 1.6.
* gnu/packages/xdisorg.scm (scrot): Update to 1.6.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add IMLIB2.
2021-08-30 14:30:53 +02:00
Ludovic Courtès b4452ffe9b
build: Build (gnu packages rocm).
This is a followup to df90cb1d5c.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/packages/rocm.scm.
2021-08-30 14:27:30 +02:00
Ludovic Courtès 1037211d1b
services: hurd-vm: Use the new 'targets' field of <bootloader-configuration>.
* gnu/services/virtualization.scm (%hurd-vm-operating-system): Use
'targets' instead of 'target' for the 'bootloader-configuration' field.
2021-08-30 14:24:14 +02:00
Ludovic Courtès baf4272df2
bootloader: Report location of the deprecated 'target' field.
This is a followup to 2ca982ff41.

* gnu/bootloader.scm (warn-target-field-deprecation): New macro.
(<bootloader-configuration>)[target]: Add 'sanitize' property.
(%warn-target-field-deprecation): New procedure.
(bootloader-configuration-target): Define using 'define-deprecated'.
(bootloader-configuration-targets): Use
'%bootloader-configuration-target' rather than the deprecated one.
2021-08-30 14:22:35 +02:00
Ludovic Courtès 8e8d85f722
build: Build (gnu system setuid).
This is a followup to 45235e67e4.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/system/setuid.scm.
2021-08-30 12:26:03 +02:00
Ludovic Courtès 541e2f9a01
gnu: extra-cmake-modules: Avoid dependency on qtbase when on armhf.
* gnu/packages/kde-frameworks.scm (extra-cmake-modules)[native-inputs]:
Remove QTBASE-5 on armhf-linux.
[arguments]: Set #:tests? accordingly.
2021-08-30 12:17:02 +02:00
Mathieu Othacehe f91ae9425b
services: xorg: Delay the xorg-configuration-modules field evaluation.
When building an image with the "system" parameter set to an emulated
architecture, the xorg-configuration-modules field needs to be evaluated once
the %current-system parameter is set, otherwise this parameter is set to the
current host system.

* gnu/services/xorg.scm (<xorg-configuration>)[modules]: Make it a thunked
field.
2021-08-30 10:59:18 +02:00
Jan (janneke) Nieuwenhuizen 8ef38cd1bf
gnu: guile-websocket: Update to 0.1-d17878f6.
* gnu/packages/guile-xyz.scm (guile-websocket)[source]: Update to
0.1-d17878f6.  Use https:// url.
[phases]: Remove "update-guile-version" stage.
[native-inputs]: Add pkg-config.
2021-08-30 07:56:49 +02:00
Pierre Langlois 663c4dc27f
gnu: Add emacs-helm-xref.
* gnu/packages/emacs-xyz.scm (emacs-helm-xref): New variable.
2021-08-29 20:14:06 +01:00
Pierre Langlois 7d5cb45b49
gnu: mu: Update to 1.6.5.
* gnu/packages/mail.scm (mu): Update to 1.6.5.
2021-08-29 20:14:04 +01:00
Mathieu Othacehe 994d8ce394
gnu: shadow: Use the cross-compiled shell at runtime.
Make sure that the executed shell at runtime is the cross-compiled shell and
not the native shell.

* gnu/packages/admin.scm (shadow)[arguments]: Add a set-runtime-shell phase.
[inputs]: Add bash-minimal when cross-compiling.
2021-08-29 18:57:29 +02:00
Oleg Pykhalov 5fdc46a9fe
gnu: Add emacs-hideshowvis.
* gnu/packages/emacs-xyz.scm (emacs-hideshowvis): New variable.
2021-08-29 17:34:43 +03:00
Brice Waegeneire 8fe8f53454
gnu: rofi: Update to 1.7.0.
* gnu/packages/xdisorg.scm (rofi): Update to 1.7.0.
  [inputs]: Add xcb-util-cursor.
  [source]<origin>, [home-page]: Change URL to the redirected one.
2021-08-29 16:05:47 +02:00
Maxime Devos 7256d9d204
isc-dhcp: Fix dhclient-script wrapper when cross-compiling.
This causes many rebuilds, but only when cross-compiling.
This should unbreak Internet access on cross-compiled pinebook
images.

Reported-By: Guest4977 (on IRC)

* gnu/gnunet/packages/admin.scm
  (isc-dhcp)[arguments]<#:phases>{post-install}: Use the
  cross-compiled bash when cross-compiling. Work-around
  <https://issues.guix.gnu.org/49290>.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-08-29 11:57:47 +02:00
Efraim Flashner 9734da36f2
services: Remove i486 qemu target.
The i486 target has been removed from qemu since at least 5.2.0.

* gnu/services/virtualization.scm (%i486): Remove variable.
(%qemu-platforms): Remove it.
2021-08-29 09:50:11 +03:00
Maxim Cournoyer 8ad6624b96
services: base: Honor file-system-create-mount-point? at all times.
Fixes <https://issues.guix.gnu.org/40158>.

* gnu/services/base.scm (file-system-shepherd-service): Update doc.  Return a
shepherd service for the mount point when either MOUNT? or CREATE? is true.
[start]: Only mount when MOUNT? is true.
(file-system-shepherd-services): Also consider file systems with
create-mount-point? set to #t.
2021-08-29 01:31:52 -04:00
Maxim Cournoyer 0bc5448cf1
gnu: python-pytest-django: Update to 4.4.0.
* gnu/packages/django.scm (python-pytest-django): Update to 4.4.0.
[tests?]: Disable test suite.
[native-inputs]: Replace python-pytest-xdist by python-pytest-xdist-next.
[home-page]: Update home page.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer 352f72ac02
gnu: python-django: Update to 3.2.6.
* gnu/packages/django.scm (python-django): Update to 3.2.6.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer 019bf96300
gnu: ansible: Update to 4.4.0.
* gnu/packages/admin.scm (ansible): Update to 4.4.0.
[native-inputs]: Remove field.
[inputs]: Likewise.
[arguments]: Likewise.
[propagated-inputs]: New field.
[native-search-paths]: New search path.
[description]: Update description.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer 83bf3c63da
gnu: Add ansible-core.
* gnu/packages/admin.scm (ansible-core): New variable.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer fa4c3deb8b
gnu: Add python-pytest-xdist-next.
* gnu/packages/check.scm (python-pytest-xdist-next): New variable.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer 9482c5ad03
gnu: python-pytest-xdist: Fix by downgrading to 1.34.0, run test suite.
Commit ed72e55831 updated the package to 2.1.0, but this version doesn't work
with Pytest 5, the version currently used in Guix.  Downgrade to the last
version that is compatible with Pytest 5.

* gnu/packages/check.scm (python-pytest-xdist): Downgrade to 1.34.0, with a
comment explaining why.  Strip trailing #t.
[source]: Remove origin modules and snippet field, no longer necessary.
[phases]{check}: Override to run the test suite.
[propagated-inputs]: Remove python-py and add python-pytest-forked.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer 48461816e4
gnu: python-pytest-mock: Update to 3.6.1 and run test suite.
* gnu/packages/check.scm (python-pytest-mock): Update to 3.6.1.
[phases]{check}: Override to run test suite.
[propagated-inputs]: Add python-pytest-asyncio.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer b1ef8b410c
gnu: python-pytest-asyncio: Enable tests and patch for Python 3.8.
* gnu/packages/patches/python-pytest-asyncio-python-3.8.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/check.scm (python-pytest-asyncio)
[source]: Fetch from git and apply above patch.
[phases]: Override the check phase, enabling tests.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer 0a2c8b10fc
gnu: python-pytest-forked: Update to 1.3.0 and run test suite.
* gnu/packages/check.scm (python-pytest-forked)[origin]: Use git.
[phases]{disable-setuptools-scm}: New phase.
{check}: Override phase.
[propagated-inputs]: Remove field.
[native-inputs]: Remove ??? and add python-pytest-bootstrap.
[home-page]: Fix indentation.
[synopsis]: Update.
[description]: Expound.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer bece6dd70d
gnu: python-py-next: Update to 1.10.0.
* gnu/packages/python-xyz.scm (python-py-next): Update to 1.10.0.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer 399a844aad
gnu: python-mock: Update description.
* gnu/packages/check.scm (python-mock)
[description]: Mention this library is now part of Python 3.3 onward.
2021-08-29 01:05:27 -04:00
Maxim Cournoyer 3d0fd83f24
gnu: python-rope: Update to 0.19.0 and remove python2-rope.
* gnu/packages/python-xyz.scm (python-rope): Update to 0.19.0.
[source]: Fix indentation.
[arguments]: Remove.
[native-inputs]: Remove.
[license]: Correct license.
(python2-rope): Delete variable.
2021-08-29 01:05:27 -04:00
Maxim Cournoyer 1d94000d87
gnu: python-execnet: Update to 1.9.0 and enable tests.
* gnu/packages/patches/python-execnet-read-only-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-xyz.scm (python-execnet): Update to 1.9.0.
[source]: Fix indentation.
[arguments]: Enable tests, replacing the default check phase.
2021-08-29 01:05:27 -04:00
Maxim Cournoyer 66071cd85e
gnu: python-pytest-6: Update to 6.2.4 and propagate iniconfig.
* gnu/packages/check.scm (python-pytest-6): Update to 6.2.4.  Fix typo.
Removing trailing #t.
[native-inputs]: Delete the extraneous python-mock input.
Move python-iniconfig to...
[propagated-inputs]: ... here.
2021-08-29 01:05:27 -04:00