Tobias Geerinckx-Rice
a2bd16ff99
gnu: vim: Update to 8.0.0147.
...
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0147.
2017-01-07 00:26:23 +01:00
Tobias Geerinckx-Rice
0102fba27c
gnu: font-liberation: Use @enumerate in description.
...
* gnu/packages/fonts.scm (font-liberation)[description]: Use @enumerate.
2017-01-07 00:26:22 +01:00
Tobias Geerinckx-Rice
b4774d87e4
gnu: fonts: Improve synopses & descriptions.
...
* gnu/packages/fonts.scm (font-google-noto, font-hack)[synopsis,
description]: Fix typos, grammar, and general style only.
(font-dejavu, font-terminus, font-wqy-zenhei)[description]: Likewise.
2017-01-07 00:26:22 +01:00
Tobias Geerinckx-Rice
8837860c66
gnu: fonts: Use install-file where appropriate.
...
* gnu/packages/fonts.scm (font-ubuntu, font-dejavu, font-bitstream-vera,
font-gnu-freefont-ttf, font-liberation, font-wqy-zenhei, font-anonymous-pro,
font-google-noto, font-un, font-hack): Substitute the simpler INSTALL-FILE
for every COPY-FILE invoked with redundant arguments.
2017-01-07 00:26:12 +01:00
Tobias Geerinckx-Rice
9657aeb187
gnu: python-tblib: Properly @end enumerate.
...
* gnu/packages/python.scm (python-tblib)[description]: Don't use
‘@end itemize’ to end an ‘@enumerate’ block.
2017-01-07 00:23:53 +01:00
Leo Famulari
aa21c764d6
gnu: python-pycrypto: Fix CVE-2013-7459.
...
* gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto)[source]: Use the
patch. Use pypi-uri.
2017-01-06 13:50:18 -05:00
Leo Famulari
707c65aad7
gnu: nspr: Update to 4.13.1.
...
* gnu/packages/gnuzilla.scm (nspr): Update to 4.13.1.
2017-01-06 13:09:05 -05:00
Ricardo Wurmus
3a3bf2f819
gnu: Add r-copywriter.
...
* gnu/packages/bioinformatics.scm (r-copywriter): New variable.
2017-01-06 16:31:19 +01:00
Ricardo Wurmus
d407bdb931
gnu: Add r-copyhelper.
...
* gnu/packages/bioinformatics.scm (r-copyhelper): New variable.
2017-01-06 16:31:14 +01:00
Ricardo Wurmus
6193563a36
gnu: Add r-chipseq.
...
* gnu/packages/bioinformatics.scm (r-chipseq): New variable.
2017-01-06 16:31:02 +01:00
Christopher Baines
fab2784dbb
gnu: gnome-tweak-tool: Add missing inputs.
...
* gnu/packages/gnome.scm (gnome-tweak-tool)[inputs]: Add gnome-desktop
and libsoup.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Christopher Baines
adb41527ad
gnu: gnome-tweak-tool: Make propagated-inputs just inputs.
...
* gnu/packages/gnome.scm (gnome-tweak-tool)[propagated-inputs]: Merge
with...
[inputs]: ... this.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Christopher Baines
9af6bce1e1
gnu: gnome-tweak-tool: Wrap program to set 'GI_TYPELIB_PATH'.
...
* gnu/packages/gnome.scm (gnome-tweak-tool)[arguments]: Add
'wrap-program' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Christopher Baines
7ef335b0e8
gnu: gnome-tweak-tool: Use glib-or-gtk-build-system.
...
This allows gobject introspection namespaces to be found.
* gnu/packages/gnome.scm (gnome-tweak-tool)[build-system]: Set to
GLIB-OR-GTK-BUILD-SYSTEM.
[arguments]: Use %GLIB-OR-GTK-BUILD-SYSTEM-MODULES in #:imported-modules.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Ben J Woodcroft
dbf9d37114
gnu: bioruby: Update to 1.5.1.
...
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1.
2017-01-06 19:06:07 +10:00
Ben J Woodcroft
0c37e2a3d2
gnu: cd-hit: Update to 4.6.6.
...
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6.
2017-01-06 19:06:03 +10:00
Leo Famulari
e50d5b8c9d
gnu: khal: Disable failing tests.
...
* gnu/packages/patches/khal-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/calendar.scm (khal): Use it.
2017-01-06 03:19:40 -05:00
Leo Famulari
e0c32fc817
gnu: vdirsyncer: Update to 0.14.1.
...
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.1.
2017-01-06 03:19:40 -05:00
Leo Famulari
491b78a8e8
gnu: python-icalendar: Update to 3.11.1.
...
* gnu/packages/python.scm (python-icalendar): Update to 3.11.1.
2017-01-06 03:19:36 -05:00
Ludovic Courtès
fbec5abeef
gnu: gv: Do not propagate Ghostscript.
...
* gnu/packages/gv.scm (gv)[propagated-inputs]: Remove.
[arguments]: New field.
[inputs]: Add GHOSTCRIPT/X.
2017-01-05 23:45:38 +01:00
Alex Kost
ec14d2157d
gnu: emacs-smartparens: Update to 1.9.0.
...
* gnu/packages/emacs.scm (emacs-smartparens): Update to 1.9.0.
2017-01-06 00:31:03 +03:00
Alex Kost
922ab34446
gnu: magit: Update to 2.10.0.
...
* gnu/packages/emacs.scm (magit, emacs-magit-popup): Update to 2.10.0.
2017-01-06 00:29:23 +03:00
Alex Kost
cfb9026aa5
gnu: emacs-with-editor: Update to 2.5.9.
...
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.9.
2017-01-06 00:29:23 +03:00
Danny Milosavljevic
6c8a387af2
gnu: Add ghc-markdown-unlit.
...
* gnu/packages/haskell.scm (ghc-markdown-unlit): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 18:47:40 +01:00
Tobias Geerinckx-Rice
12c15242f4
gnu: beep: Ignore substitute* return value.
...
* gnu/packages/terminals.scm (beep)[arguments]: End 'patch-makefile phase
with truth.
2017-01-05 17:40:54 +01:00
David Thompson
543bd0eede
gnu: sdl2: Add fcitx input.
...
* gnu/packages/sdl.scm (sdl2)[inputs]: Add fcitx.
2017-01-05 11:27:10 -05:00
David Thompson
e0101b54b7
gnu: sdl2: Fix double input events bug.
...
* gnu/packages/sdl.scm (sdl2)[inputs]: Add dbus, gblib, and ibus.
2017-01-05 11:22:32 -05:00
Leo Famulari
f537ad0bf3
Revert "gnu: gawk: Don't replace 'sh' reference with 'bash'."
...
This commit causes too many rebuilds. It will be re-committed to core-updates.
This reverts commit 5b2834ae79
.
2017-01-05 11:22:07 -05:00
Leo Famulari
5b2834ae79
gnu: gawk: Don't replace 'sh' reference with 'bash'.
...
* gnu/packages/gawk.scm (gawk)[arguments]: Use /bin/sh instead of /bin/bash in
'set-shell-file-name' phase.
2017-01-05 11:06:06 -05:00
Marius Bakke
d9d23101ce
gnu: irssi: Update to 1.0.0.
...
* gnu/packages/irc.scm (irssi): Update to 1.0.0.
[arguments]: Remove --with-ncurses configure flag.
[native-inputs]: Move 'perl' to ...
[inputs]: ... here.
[home-page]: Use HTTPS.
2017-01-05 16:44:34 +01:00
Marius Bakke
1bd858cc14
gnu: Fix indentation of some python packages.
...
This is a followup to abe2ec73..807a5b32.
* gnu/packages/python.scm (python-snowballstemmer,
python-sphinx-cloud-sptheme, python-sphinx-alabaster-theme): Fix indentation.
2017-01-05 16:28:01 +01:00
Danny Milosavljevic
807a5b32bf
gnu: Add python-sphinx-alabaster-theme.
...
* gnu/packages/python.scm (python-sphinx-alabaster-theme,
python2-sphinx-alabaster-theme): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 16:17:27 +01:00
Danny Milosavljevic
754bfd7019
gnu: Add python-sphinx-cloud-sptheme.
...
* gnu/packages/python.scm (python-sphinx-cloud-sptheme,
python2-sphinx-cloud-sptheme): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 16:17:27 +01:00
Danny Milosavljevic
89cd988b6c
gnu: Add python-snowballstemmer.
...
* gnu/packages/python.scm (python-snowballstemmer,
python2-snowballstemmer): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 16:17:26 +01:00
José Miguel Sánchez García
abe2ec735f
gnu: Add beep.
...
* gnu/packages/terminals.scm (beep): New variable.
Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-01-05 13:09:19 +01:00
Tobias Geerinckx-Rice
88a46c9812
gnu: Remove unused module import from (gnu packages mtools).
...
This is a follow-up to commit 3b0f2ba46b
.
* gnu/packages/mtools.scm: Remove import of (gnu packages python).
2017-01-05 13:09:19 +01:00
Ben Woodcroft
19e5fb6030
gnu: ruby-nokogiri: Update to 1.7.0.1.
...
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.7.0.1.
2017-01-05 21:00:51 +10:00
Ben Woodcroft
8e941f2068
gnu: ruby-hoe: Update to 3.16.0.
...
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.16.0.
2017-01-05 20:52:22 +10:00
Leo Famulari
5f0fabec54
gnu: unrtf: Fix CVE-2016-10091.
...
* gnu/packages/patches/unrtf-CVE-2016-10091.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/unrtf.scm (unrtf)[source]: Use it.
2017-01-04 14:42:58 -05:00
Alex Griffin
7a203059d3
gnu: libreoffice: Update to 5.1.6.2.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.6.2.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-04 14:37:58 -05:00
David Craven
3dcaa1226d
gnu: ocamlmod: Enable tests.
...
Followup to 93eeadf022
.
* gnu/packages/ocaml.scm (ocamlmod)[arguments]: Enable tests.
Problem reported by Julien Lepiller <julien@lepiller.eu>.
2017-01-04 19:10:01 +01:00
David Craven
337273e41f
gnu: ocaml-ounit: Enable tests.
...
Followup to 7a76b4afd0
.
* gnu/packages/ocaml.scm (ocaml-ounit)[arguments]: Enable tests.
Problem reported by Julien Lepiller <julien@lepiller.eu>.
2017-01-04 19:10:00 +01:00
Efraim Flashner
9c64f76e8a
gnu: aria2: Update to 1.30.0.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.30.0.
2017-01-04 19:15:00 +02:00
Ricardo Wurmus
68f9067324
gnu: inkscape: Update to 0.92.0.
...
* gnu/packages/patches/inkscape-drop-wait-for-targets.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/inkscape.scm (inkscape): Update to 0.92.0.
[build-system]: Use "cmake-build-system".
[native-inputs]: Add glib:bin.
[arguments]: Remove obsolete arguments; disable tests.
2017-01-04 18:06:44 +01:00
Julien Lepiller
6548e53fcb
gnu: Add ocaml-cmdliner.
...
* gnu/packages/ocaml.scm (ocaml-cmdliner): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller
eb1ba73185
gnu: Add ocaml-mtime.
...
* gnu/packages/ocaml.scm (ocaml-mtime): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller
63147e5e1e
gnu: Add ocaml-rresult.
...
* gnu/packages/ocaml.scm (ocaml-rresult): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller
a359c7277c
gnu: Add ocaml-topkg.
...
* gnu/packages/ocaml.scm (ocaml-topkg): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller
704b990c36
gnu: Add ocaml-result.
...
* gnu/packages/ocaml.scm (ocaml-result): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller
44c23cb8d8
gnu: Add ocaml-bitstring.
...
* gnu/packages/ocaml.scm (ocaml-bitstring): New variable.
* gnu/packages/patches/ocaml-bitstring-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller
a5b5bd1d18
gnu: Add ocaml-bisect.
...
* gnu/packages/ocaml.scm (ocaml-bisect): New variable.
* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:10 +01:00
Julien Lepiller
3d598ebd35
gnu: Add ocaml-stringext.
...
* gnu/packages/ocaml.scm (ocaml-stringext): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:10 +01:00
Julien Lepiller
0472836fce
gnu: Add ocaml-qtest.
...
* gnu/packages/ocaml.scm (ocaml-qtest): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:10 +01:00
Julien Lepiller
ff891f10ed
gnu: Add ocaml-frontc.
...
* gnu/packages/ocaml.scm (ocaml-frontc): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:10 +01:00
Ludovic Courtès
a614ce389f
gnu: Add Guile-Bash.
...
* gnu/packages/guile.scm (guile-bash): New variable.
2017-01-04 16:18:52 +01:00
Julien Lepiller
ddf2b503b1
gnu: Add ocaml-zarith.
...
* gnu/packages/ocaml.scm (ocaml-zarith): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:05:28 +01:00
Julien Lepiller
93eeadf022
gnu: Add ocamlmod.
...
* gnu/packages/ocaml.scm (ocamlmod): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:05:25 +01:00
Julien Lepiller
bc2c3bc627
gnu: Add camlzip.
...
* gnu/packages/ocaml.scm (camlzip): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:05:06 +01:00
Julien Lepiller
7a76b4afd0
gnu: Add ocaml-ounit.
...
* gnu/packages/ocaml.scm (ocaml-ounit): New variable.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:04:51 +01:00
Julien Lepiller
ad3d730e3a
gnu: camlp4: Install camlp4 META file.
...
* gnu/packages/ocaml.scm (camlp4)[arguments]: Install in OCAMLPATH and
META file.
(ocaml-findlib)[arguments]: Delete camlp4 META file.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:04:32 +01:00
Julien Lepiller
56f73eadc0
gnu: ocaml: Use a helper function to download from ocaml-forge.
...
* gnu/packages/ocaml.scm (ocaml-forge-origin): New procedure.
(lablgtk)[origin]: Use it.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:03:56 +01:00
Julien Lepiller
e6876cb9dc
gnu: Add ocaml-build-system.
...
* guix/build/ocaml-build-system.scm: New file.
* guix/build-system/ocaml.scm: New file.
* Makefile.am (MODULES): Add them.
* gnu/packages/ocaml.scm (ocaml)[native-search-paths]: Adjuste OCAMLPATH.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:03:39 +01:00
Julien Lepiller
e0ddaa8be3
gnu: camlp4: Compile native version.
...
* gnu/packages/ocaml.scm (camlp4)[arguments]: Disable parallel-build.
Change default target to "all" to compile native and byte version.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:03:16 +01:00
David Craven
2b1f7b83f7
gnu: ocaml: Fix indentation.
...
* gnu/packages/ocaml.scm (ocaml): Fix indentation.
2017-01-04 16:03:07 +01:00
Julien Lepiller
796a17ab01
gnu: ocaml: Add CAML_LD_LIBRARY_PATH search-path.
...
* gnu/packages/ocaml.scm (ocaml)[native-search-paths]: Add
CAML_LD_LIBRARY_PATH.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:03:00 +01:00
Julien Lepiller
8bd10c1082
gnu: ocaml: Add a .file directive to generated .s files.
...
* gnu/packages/ocaml.scm (ocaml)[origin]: Add patch.
* gnu/packages/patches/ocaml-Add-a-.file-directive.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:02:38 +01:00
David Craven
1ff755d1d5
gnu: Reorder imports in (gnu packages ocaml).
...
* gnu/packages/ocaml.scm: Reorder imports alphabetically.
2017-01-04 14:07:56 +01:00
David Craven
d8e0a08c26
gnu: Use 'license:' prefix in (gnu packages ocaml).
...
* gnu/packages/ocaml.scm (ocaml, opam, camlp4, camlp5, hevea, coq,
proof-general, ocaml-menhir, lablgtk, unison, ocaml-findlib)[license]:
Add prefix.
2017-01-04 14:07:56 +01:00
David Craven
3254e1aba9
gnu: Add idris-lens.
...
* gnu/packages/idris.scm (idris-lens): New variable.
2017-01-04 12:11:14 +01:00
David Craven
5a16d828b3
gnu: Add idris-bifunctors.
...
* gnu/packages/idris.scm (idris-bifunctors): New variable.
2017-01-04 12:11:14 +01:00
David Craven
4e17fff386
gnu: Add idris-wl-pprint.
...
* gnu/packages/idris.scm (idris-wl-pprint): New variable.
2017-01-04 12:11:14 +01:00
David Craven
ea3b38f1e1
gnu: Add idris-lightyear.
...
* gnu/packages/idris.scm (idris-lightyear, idris-default-arguments):
New variables.
2017-01-04 12:11:14 +01:00
David Craven
ae482ce12d
gnu: idris: Move to (gnu packages idris).
...
* gnu/packages/haskell.scm: Move 'idris' to...
* gnu/packages/idris.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add idris.scm.
2017-01-04 11:51:36 +01:00
David Craven
c7a7129c5a
gnu: idris: Update to 0.99.
...
* gnu/packages/haskell.scm (idris): Update to 0.99.
2017-01-04 11:44:07 +01:00
David Craven
c0d5b6452b
gnu: Order module imports in (gnu packages haskell) alphabetically.
...
* gnu/packages/haskell.scm: Order module imports alphabetically.
2017-01-04 11:44:07 +01:00
Ricardo Wurmus
de793e9a5a
gnu: ghc-language-c: Fix up.
...
* gnu/packages/haskell.scm (ghc-language-c): Fix up indentation and
description.
2017-01-04 11:41:43 +01:00
David Craven
3b7ccbe94c
build-system: cargo: Use correct cargo.
...
* gnu/packages/rust.scm (cargo-bootstrap): Make private.
* guix/build-system/cargo.scm (default-cargo): Use cargo.
2017-01-04 11:29:15 +01:00
David Craven
b5a09649db
gnu: Add cargo.
...
* gnu/packages/rust.scm (cargo): New variable.
2017-01-04 11:29:14 +01:00
Danny Milosavljevic
2d2388e243
gnu: Add ghc-language-c.
...
* gnu/packages/haskell.scm (ghc-language-c): New variable.
2017-01-04 11:27:24 +01:00
Leo Famulari
324f4fc559
gnu: mcrypt: Fix patches for CVE-2012-{4409,4527}.
...
This fixes CVE-2012-{4409,4527}.
This is a followup to commit fd1461879c
.
* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: Apply the patches to the mcrypt
source code.
2017-01-04 02:46:51 -05:00
Alex Griffin
37e8a2e219
gnu: calibre: Update to 2.76.0.
...
* gnu/packages/ebook.scm (calibre): Update to 2.76.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-04 00:00:34 -05:00
Alex Griffin
f7e9f1cadc
gnu: feh: Update to 2.18.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.18.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:22 -05:00
Alex Griffin
eb5378f902
gnu: bs1770gain: Update to 0.4.12.
...
* gnu/packages/audio.scm (bs1770gain): Update to 0.4.12.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:22 -05:00
Alex Griffin
648733dc14
gnu: dwm: Update to 6.1.
...
* gnu/packages/suckless.scm (dwm): Update to 6.1.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:22 -05:00
Alex Griffin
bc47382a5d
gnu: dmenu: Update to 4.6.
...
* gnu/packages/suckless.scm (dmenu): Update to 4.6.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:21 -05:00
Alex Griffin
f3a53f3c8f
gnu: slock: Update to 1.4.
...
* gnu/packages/suckless.scm (slock): Update to 1.4.
[source] Remove CVE-2016-6866 patch (no longer needed).
* gnu/packages/patches/slock-CVE-2016-6866.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:21 -05:00
Alex Griffin
8efd807f95
gnu: trash-cli: Update to 0.17.1.1.
...
* gnu/packages/shellutils.scm (trash-cli): Update to 0.17.1.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:21 -05:00
Tobias Geerinckx-Rice
3b40213923
gnu: Add wimlib.
...
* gnu/packages/backup.scm (wimlib): New variable.
2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice
835d371f4b
gnu: parallel: Update to 20161222.
...
* gnu/packages/parallel.scm (parallel): Update to 20161222.
2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice
0b2a91d8b7
gnu: global: Update to 6.5.6.
...
* gnu/packages/code.scm (global): Update to 6.5.6.
2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice
02dadd3827
gnu: nano: Update to 2.7.3.
...
* gnu/packages/nano.scm (nano): Update to 2.7.3.
2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice
3b3b60d037
gnu: Use HTTPS for all sourceforge.net home pages.
...
* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS.
* gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise.
* gnu/packages/display-managers.scm (slim)[home-page]: Likewise.
* gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise.
* gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix,
ghc-regex-compat)[home-page]: Likewise.
* gnu/packages/image.scm (imlib2)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw)
[home-page]: Likewise.
* gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools)
[home-page]: Likewise.
* gnu/packages/mail.scm (esmtp)[home-page]: Likewise.
* gnu/packages/mp3.scm (ripperx)[home-page]: Likewise.
* gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise.
* gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise.
2017-01-04 05:14:22 +01:00
Christopher Baines
0916dc526e
gnu: Add emacs-git-gutter
...
* gnu/packages/emacs.scm (emacs-git-gutter): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 22:46:55 -05:00
Kei Kebreau
ea5cc29561
gnu: supertux: Update to 0.5.1.
...
* gnu/packages/games.scm (supertux): Update to 0.5.1.
2017-01-03 18:07:45 -05:00
Leo Famulari
f339f2773d
gnu: assword: Update to 0.10.
...
* gnu/packages/password-utils.scm (assword): Update to 0.10.
[arguments]: Use Python 3 instead of Python 2.
[inputs]: Use Python 3 variants of inputs. Replace python2-pygpgme with
python-gpg. Remove python2-pygtk. Add python-pygobject.
[native-inputs]: Replace help2man with txt2man.
[arguments]: Remove PYTHONPATH from 'Makefile' in the 'manpage' phase.
2017-01-03 12:35:45 -05:00
Leo Famulari
7637de2313
gnu: Add python-xdo.
...
* gnu/packages/python.scm (python-xdo): New variable.
(python2-xdo): Use package-with-python2.
2017-01-03 12:35:44 -05:00
Leo Famulari
e871c332a0
gnu: python2-xdo: Update to 0.3.
...
* gnu/packages/python.scm (python2-xdo): Update to 0.3.
2017-01-03 12:35:44 -05:00
Leo Famulari
e3dd1f0cb8
gnu: Add python-gpg.
...
* gnu/packages/gnupg.scm (python-gpg, python2-gpg): New variable.
2017-01-03 12:35:44 -05:00
Leo Famulari
9e0f16f23f
gnu: gpgme: Update to 1.8.0.
...
* gnu/packages/gnupg.scm (gpgme): Update to 1.8.0.
[arguments]: Don't set 'GPG=gpg2' in #:configure-flags. GnuPG-2.x is
installed as 'gpg' on Guix.
2017-01-03 12:35:44 -05:00
Ludovic Courtès
70c6341110
gnu: Add Zile-on-Guile.
...
* gnu/packages/zile.scm (zile-on-guile): New variable.
2017-01-03 18:16:01 +01:00
Marius Bakke
e2c3037427
gnu: pcsc-lite: Update to 1.8.20 [fixes CVE-2016-10109].
...
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.20.
2017-01-03 17:15:04 +01:00
Manolis Ragkousis
367f701379
gnu: glibc-hurd: Disable werror.
...
* gnu/packages/base.scm (glibc/hurd)[arguments]: Add "--disable-werror".
2017-01-03 16:00:43 +02:00
Manolis Ragkousis
62596a158b
gnu: Use hurd-triplet? to check if GNU/Hurd.
...
* gnu/packages/make-bootstrap.scm (hurd-triplet?): Move it from here..
* gnu/packages/hurd.scm: ..to here. New exported procedure.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)
[arguments]: Replace string-match.
[inputs]: Same.
* gnu/packages/cross-base.scm (cross-libc)[native-inputs]: Same.
2017-01-03 16:00:39 +02:00
Kei Kebreau
6a37872cd2
gnu: chicken: Fix CVE-2016-{6830,6831}.
...
* gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
2017-01-03 08:35:02 -05:00
Kei Kebreau
b9b6db45e8
gnu: chicken: Update to 4.11.1.
...
* gnu/packages/scheme.scm (chicken): Update to 4.11.1.
2017-01-03 08:34:54 -05:00
Roel Janssen
7b030c9f9b
gnu: r-plotrix: Update to 3.6-4.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
2017-01-03 13:51:05 +01:00
Roel Janssen
0c74399d98
gnu: r-git2r: Update to 0.18.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
2017-01-03 13:49:18 +01:00
Roel Janssen
807db78fc9
gnu: r-hmisc: Update to 4.0-2.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
[propagated-inputs]: Add r-base64enc.
2017-01-03 13:46:14 +01:00
Roel Janssen
437d064dc5
gnu: r-openssl: Update to 0.9.6.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
2017-01-03 13:39:51 +01:00
Roel Janssen
596fcfac88
gnu: r-jsonlite: Update to 1.2.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.2.
2017-01-03 13:37:55 +01:00
Roel Janssen
da13738ef0
gnu: r-ggplot2: Update to 2.2.1.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
2017-01-03 13:34:53 +01:00
Roel Janssen
407a280103
gnu: r-genomicranges: Update to 1.26.2.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.2.
2017-01-03 13:28:35 +01:00
Roel Janssen
ac370a3397
gnu: r-genomeinfodb: Update to 1.10.2.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.2.
2017-01-03 12:47:36 +01:00
Efraim Flashner
4fb14fad94
gnu: sudo: Update to 1.8.19p1.
...
* gnu/packages/admin.scm (sudo): Update to 1.8.19p1.
2017-01-03 10:12:27 +02:00
Brandon Ludwig
b1251a2f96
gnu: arc-theme: Update to 20161119.
...
* gnu/packages/gnome.scm (arc-theme): Update to 20161119.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 00:29:42 -05:00
Maxim Cournoyer
6155186838
gnu: gimp: Enable PDF support
...
* gnu/packages/gimp.scm (gimp)[inputs]: Add poppler.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 00:18:51 -05:00
Leo Famulari
47932c0d44
gnu: lynx: Update to 2.8.9dev.11 [fixes CVE-2016-9179].
...
* gnu/packages/lynx.scm (lynx): Update to 2.8.9dev.11.
2017-01-02 23:52:12 -05:00
Leo Famulari
b3e2ea8d48
gnu: Add sonic.
...
* gnu/packages/speech.scm (sonic): New variable.
2017-01-02 18:03:10 -05:00
Mathieu OTHACEHE
5819431c59
gnu: Add cmst.
...
* gnu/packages/connman.scm (cmst): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-02 22:55:33 +01:00
Mathieu OTHACEHE
125e3cdece
gnu: connman: Add dependency on polkit.
...
* gnu/packages/connman.scm (connman)[arguments]: Add "--enable-polkit".
[inputs]: Add POLKIT.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-02 22:55:33 +01:00
Efraim Flashner
832d60dc01
gnu: mpv: Update to 0.23.0.
...
* gnu/packages/video.scm (mpv): Update to 0.23.0.
2017-01-02 21:48:49 +02:00
Efraim Flashner
8d2de491e5
gnu: openvpn: Update to 2.3.14.
...
* gnu/packages/vpn.scm (openvpn): Update to 2.3.14.
2017-01-02 21:48:48 +02:00
Efraim Flashner
68b3627cd6
gnu: ffmpeg@2.8: Update to 2.8.10.
...
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.10.
2017-01-02 21:48:48 +02:00
Efraim Flashner
4b50daab00
gnu: jasper: Update to 2.0.10.
...
* gnu/packages/image.scm (jasper): Update to 2.0.10.
2017-01-02 21:48:38 +02:00
Ludovic Courtès
1a49a10a94
gnu: fftw: Factorize creation of the --enable-threads variant.
...
* gnu/packages/algebra.scm (pthread-variant): New procedure.
(fftw-with-threads, fftwf-with-threads): Use it.
2017-01-02 14:54:24 +01:00
Ludovic Courtès
7355634db3
gnu: Disambiguate packages with the same name.
...
* gnu/packages/algebra.scm (fftw-with-threads, fftwf-with-threads): Add
'name' field.
* gnu/packages/llvm.scm (llvm-for-extempore): Likewise.
2017-01-02 14:54:24 +01:00
Ludovic Courtès
9af076245f
gnu: gfortran: Remove non-'eq?' duplicate of gfortran@4.9.
...
* gnu/packages/gcc.scm (gfortran): Turn into an alias for GFORTRAN-4.9.
2017-01-02 14:54:24 +01:00
Tobias Geerinckx-Rice
1b5ea0922f
gnu: python-s3transfer: Update to 0.1.10.
...
* gnu/packages/python.scm (python-s3transfer): Update to 0.1.10.
2017-01-02 08:37:26 +01:00
Tobias Geerinckx-Rice
1f89fb1691
gnu: python-greenlet: Update to 0.4.11.
...
* gnu/packages/python.scm (python-greenlet): Update to 0.4.11.
2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice
3753f2e6e9
gnu: python-mako: Update to 1.0.6.
...
* gnu/packages/python.scm (python-mako): Update to 1.0.6.
2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice
af27e845e1
gnu: awscli: Update to 1.11.35.
...
* gnu/packages/python.scm (awscli): Update to 1.11.35.
2017-01-02 08:37:24 +01:00
Tobias Geerinckx-Rice
bbb99d6b37
gnu: python-werkzeug: Update to 0.11.15.
...
* gnu/packages/python.scm (python-werkzeug): Update to 0.11.15.
2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice
27f9148e1d
gnu: python-backports-abc: Update to 0.5.
...
* gnu/packages/python.scm (python-backports-abc): Update to 0.5.
2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice
d79fa7da1b
gnu: python-decorator: Update to 4.0.10.
...
* gnu/packages/python.scm (python-decorator): Update to 4.0.10.
2017-01-02 08:37:22 +01:00
Tobias Geerinckx-Rice
819939cb94
gnu: python-pycparser: Use ‘modify-phases’ syntax.
...
* gnu/packages/python.scm (python-pycparser)[arguments]: Use
‘modify-phases’.
2017-01-02 08:37:21 +01:00
Tobias Geerinckx-Rice
5043b20dcd
gnu: python-pycparser: Update to 2.17.
...
* gnu/packages/python.scm (python-pycparser): Update to 2.17.
2017-01-02 08:28:28 +01:00
Leo Famulari
0d48ff811f
gnu: beets: Build with Python 3.
...
* gnu/packages/music.scm (beets)[arguments]: Build with python@3.
(native-inputs): Use Python-2 variants of all inputs.
(inputs): Use Python-2 variants of all inputs. Remove python-pyechonest.
2017-01-01 21:06:32 -05:00
Leo Famulari
27ccefc3d2
gnu: beets: Update to 1.4.2.
...
* gnu/packages/music.scm (beets): Update to 1.4.2.
2017-01-01 21:06:24 -05:00
Leo Famulari
2e161eafd8
gnu: python-pyicu: Update to 1.9.5.
...
* gnu/packages/python.scm (python-pyicu, python2-pyicu): Update to 1.9.5.
[source]: Use pypi-uri.
2017-01-01 20:15:06 -05:00
Theodoros Foradis
9a93f57473
gnu: yosys: Update to 0.7.
...
* gnu/packages/fpga.scm (yosys): Update to 0.7.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 20:06:43 -05:00
Theodoros Foradis
f90f6b683e
gnu: yosys: Add xdot functionality.
...
* gnu/packages/fpga.scm (yosys)[inputs]: Add xdot, graphviz and psmisc.
[arguments]: Add 'fix-paths' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 20:06:43 -05:00
Theodoros Foradis
abdd28e8c1
gnu: Add xdot.
...
* gnu/packages/graphviz.scm (xdot): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 20:06:43 -05:00
Leo Famulari
7be13d0006
gnu: python-ndg-httpsclient: Use pypi-uri.
...
* gnu/packages/python.scm (python-ndg-httpsclient, python2-ndg-httpsclient)
[source]: Use pypi-uri.
2017-01-01 17:01:32 -05:00
Ricardo Wurmus
5dbeccf5b4
gnu: diffoscope: Embed tool references.
...
Fixes <http://bugs.gnu.org/25315 >.
* gnu/packages/package-management.scm (diffoscope)[inputs]: Add
colordiff and vim.
[arguments]: Add "embed-tool-references" build phase to embed references
to "colordiff", "xxd", and "readelf".
2017-01-01 21:53:50 +01:00
Alex Vong
ed88dd4512
gnu: mariadb: Update to 10.1.20.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.20.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 14:51:04 -05:00
Alex Vong
e63b19f509
gnu: mysql: Update to 5.7.17.
...
* gnu/packages/databases.scm (mysql): Update to 5.7.17.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 14:45:23 -05:00
Ricardo Wurmus
395bbfdbea
gnu: Add propeller-development-suite.
...
* gnu/packages/embedded.scm (propeller-development-suite): New variable.
2017-01-01 13:56:28 +01:00
Ricardo Wurmus
3ebc86d9bd
gnu: Add spinsim.
...
* gnu/packages/embedded.scm (spinsim): New variable.
2017-01-01 13:56:28 +01:00
Ricardo Wurmus
0a7860c438
gnu: Add spin2cpp.
...
* gnu/packages/embedded.scm (spin2cpp): New variable.
2017-01-01 13:56:28 +01:00
Ricardo Wurmus
c6b96af794
gnu: Add propeller-load.
...
* gnu/packages/embedded.scm (propeller-load): New variable.
2017-01-01 13:56:28 +01:00
Ricardo Wurmus
150e0a1ec6
gnu: Add openspin.
...
* gnu/packages/embedded.scm (openspin): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus
eb88fbafcd
gnu: Add propeller-toolchain.
...
* gnu/packages/embedded.scm (propeller-toolchain): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus
0d0079b2c5
gnu: Add proplib.
...
* gnu/packages/embedded.scm (proplib): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus
68cb27840e
gnu: Add propeller-gcc.
...
* gnu/packages/embedded.scm (propeller-gcc): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus
2d7c92134e
gnu: Add propeller-binutils.
...
* gnu/packages/embedded.scm (propeller-binutils): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus
6f5b1c9107
gnu: Add dummy linker for propeller-elf.
...
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for
propeller-elf.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus
c26ba570cc
gnu: clisp: Remove timestamps.
...
* gnu/packages/lisp.scm (clisp)[arguments]: Add "remove-timestamps"
phase to remove "__DATE__" and "__TIME__".
2017-01-01 13:55:50 +01:00
Ricardo Wurmus
636c77d066
gnu: clisp: Use modify-phases syntax.
...
* gnu/packages/lisp.scm (clisp)[arguments]: Use modify-phases syntax.
2017-01-01 13:55:50 +01:00
Alex Kost
c50dc711a1
gnu: manaplus: Update to 1.6.12.24.
...
* gnu/packages/games.scm (manaplus): Update to 1.6.12.24.
2017-01-01 11:47:08 +03:00
Ben Woodcroft
25d84d3122
gnu: python-dendropy: Update to 4.2.0.
...
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-01-01 16:47:47 +10:00
Ben Woodcroft
322a583fcf
gnu: diamond: Update to 0.8.31.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.
2017-01-01 16:47:47 +10:00
Ludovic Courtès
7fc2d377d1
gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}].
...
* gnu/packages/monitoring.scm (nagios): Update to 4.2.4.
[native-inputs]: New field.
2016-12-31 20:02:59 +01:00
Tobias Geerinckx-Rice
b13a5b4d16
gnu: python-graphql-relay: Update to 0.4.5.
...
* gnu/packages/python.scm (python-graphql-relay): Update to 0.4.5.
2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice
0c315fb394
gnu: python-freezegun: Update to 0.3.8.
...
* gnu/packages/python.scm (python-freezegun): Update to 0.3.8.
2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice
234ade2d7b
gnu: python-ply: Update to 3.9.
...
* gnu/packages/python.scm (python-ply): Update to 3.9.
[source]: Use pypi-uri.
2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice
ab0c342924
gnu: python-pyquery: Update to 1.2.17.
...
* gnu/packages/python.scm (python-pyquery): Update to 1.2.17.
2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice
42734b9a88
gnu: python-click-log: Update to 0.1.8.
...
* gnu/packages/python.scm (python-click-log): Update to 0.1.8.
2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice
ae476d01da
gnu: python-ndg-httpsclient: Update to 0.4.2.
...
* gnu/packages/python.scm (python-ndg-httpsclient): Update to 0.4.2.
2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice
f165648e1b
gnu: python-ipykernel: Update to 4.5.2.
...
* gnu/packages/python.scm (python-ipykernel): Update to 4.5.2.
2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice
45cc957c72
gnu: python-jupyter-core: Update to 4.2.1.
...
* gnu/packages/python.scm (python-jupyter-core): Update to 4.2.1.
2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice
594358f5b6
gnu: python2-fastlmm: Update to 0.2.26.
...
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.26.
2016-12-31 16:51:40 +01:00
Tobias Geerinckx-Rice
a5f92ca04f
gnu: python-pytz: Update to 2016.10.
...
* gnu/packages/python.scm (python-pytz): Update to 2016.10.
2016-12-31 16:36:20 +01:00
Tobias Geerinckx-Rice
bf5e4bc42a
gnu: python-pyyaml: Update to 3.12.
...
* gnu/packages/python.scm (python-pyyaml): Update to 3.12.
[source]: Use pypi-uri.
2016-12-31 15:27:24 +01:00
Tobias Geerinckx-Rice
7d2e758df5
gnu: python-pygments: Update to 2.1.3.
...
* gnu/packages/python.scm (python-pygments): Update to 2.1.3.
2016-12-31 15:27:23 +01:00
Kei Kebreau
c055a37c8c
gnu: tiled: Update to 0.18.0.
...
* gnu/packages/game-development.scm (tiled): Update to 0.18.0.
2016-12-30 21:45:51 -05:00
ng0
da62a4a19e
gnu: mc: Partially fix absolute file paths.
...
Partially fixes <http://bugs.gnu.org/25273 >.
* gnu/packages/mc.scm (mc)[arguments]: Add new phase 'fix-absolutism.
This substitutes absolute file paths with functional file paths.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-31 01:44:04 +01:00
Troy Sankey
0f391063d9
gnu: pius: Update to 2.2.2-0.891687c.
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* gnu/packages/gnupg.scm (pius): Update to 2.2.2-0.891687c.
[inputs]: Change GNUPG-2.0 to GNUPG (2.1).
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-31 01:44:04 +01:00
José Miguel Sánchez García
68415aa4e1
gnu: libtermkey: Update to 0.19.
...
* gnu/packages/terminals.scm (libtermkey): Update to 0.19.
Co-authored-by: Leo Famulari <leo@famulari.name>
2016-12-30 16:15:25 -05:00
Leo Famulari
858b9afeaf
gnu: libpng: Mention CVE-2016-10087.
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* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ...
* gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust.
* gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch.
2016-12-30 14:33:21 -05:00
Mark H Weaver
4037e5f52b
gnu: linux-libre@4.1: Update to 4.1.37.
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.37.
2016-12-30 04:26:11 -05:00
Ben Woodcroft
a29929b32c
gnu: multiqc: Update to 0.9.
...
Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>.
* gnu/packages/bioinformatics.scm (multiqc): Update to 0.9.
[origin]: Add patch.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-12-30 17:22:43 +10:00
Chris Marusich
95d7d0c57f
gnu: elogind: Enable ACL support.
...
* gnu/packages/freedesktop.scm (elogind) [inputs]: Add acl.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29 23:42:23 +01:00
Leo Famulari
87b5209558
gnu: mpd: Install systemd service files.
...
* gnu/packages/mpd.scm (mpd)[arguments]: Add 'install-service-files' phase.
2016-12-29 17:28:34 -05:00
Ricardo Wurmus
76b64381cb
gnu: r-genomicfeatures: Update to 1.26.2.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2.
2016-12-29 22:24:12 +01:00
Ricardo Wurmus
2f642e5229
gnu: r-biostrings: Update to 2.42.1.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus
72c2693b9e
gnu: r-limma: Update to 3.30.7.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus
5796af9981
gnu: r-variantannotation: Update to 1.20.2.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus
5d3acc0b36
gnu: r-edger: Update to 3.16.5.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus
81a17b61e7
gnu: r-genomeinfodb: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus
54d9b568fc
gnu: r-iranges: Update to 2.8.1.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus
86fc9c4a2c
gnu: r-s4vectors: Update to 0.12.1.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus
c8ad8b6976
gnu: r-biocstyle: Update to 2.2.1.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1.
2016-12-29 22:24:10 +01:00
Ricardo Wurmus
007ee80277
gnu: r-deseq2: Update to 1.14.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1.
2016-12-29 22:24:10 +01:00
Ricardo Wurmus
d0f0579e6f
gnu: r-annotate: Update to 1.52.1.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1.
[propagated-inputs]: Add r-rcurl.
2016-12-29 22:24:10 +01:00
Leo Famulari
a57495e27a
gnu: khard: Update to 0.11.3.
...
* gnu/packages/mail.scm (khard): Update to 0.11.3.
[arguments]: Build with python instead of python-2. Remove
'disable-egg-compression' phase.
[propagated-inputs]: Don't use python-2 variants of propagated-inputs.
2016-12-29 16:12:13 -05:00
Ricardo Wurmus
35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
2016-12-29 21:49:13 +01:00
Ricardo Wurmus
28c041afe8
gnu: Add r-plogr.
...
* gnu/packages/statistics.scm (r-plogr): New variable.
2016-12-29 21:49:13 +01:00
Ricardo Wurmus
ab607061cd
gnu: r-hmisc: Update to 4.0-1.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
2016-12-29 21:49:12 +01:00
Ricardo Wurmus
0811f0f9d2
gnu: Add r-base64.
...
* gnu/packages/statistics.scm (r-base64): New variable.
2016-12-29 21:49:12 +01:00
Ricardo Wurmus
ca380feb37
gnu: r-rmarkdown: Update to 1.3.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
2016-12-29 21:49:12 +01:00