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Author SHA1 Message Date
Ricardo Wurmus 24e08f8f1d
gnu: r-emmeans: Update to 1.9.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.9.0.

Change-Id: I078b8023106b085716444240b6e49edafce30592
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 4c7066b673
gnu: r-sandwich: Update to 3.1-0. 
* gnu/packages/cran.scm (r-sandwich): Update to 3.1-0.

Change-Id: Ibe33dfa1bcdb1c8fac8f46131042d4829ac12a9e
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus 3e833ade11
gnu: r-quickjsr: Update to 1.0.9. 
* gnu/packages/cran.scm (r-quickjsr): Update to 1.0.9.

Change-Id: Ia7ce3d44b71d5d2493f2dcebbcdf55fa7a9cea98
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus a39df977c1
gnu: r-targets: Update to 1.4.0. 
* gnu/packages/cran.scm (r-targets): Update to 1.4.0.

Change-Id: Id2912083268d8021e99ce58b452b87505cd14f5e
 2024-01-01 14:35:14 +01:00
Ricardo Wurmus b73b056abb
gnu: r-magick: Update to 2.8.2. 
* gnu/packages/cran.scm (r-magick): Update to 2.8.2.

Change-Id: Ibdba20895ea4934b047ec1cc463a7edd3e46806c
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 3039dbf453
gnu: r-mixsqp: Update to 0.3-54. 
* gnu/packages/cran.scm (r-mixsqp): Update to 0.3-54.

Change-Id: I92fa69bf895833f8ba6b68cbcc933c1e6cb170a0
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus a27e4eed2d
gnu: r-dofuture: Update to 1.0.1. 
* gnu/packages/cran.scm (r-dofuture): Update to 1.0.1.

Change-Id: If6bb0ca6c3d9bc788a7166dd09b8a9e908d75870
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 7faf9df0d2
gnu: r-seriation: Update to 1.5.4. 
* gnu/packages/cran.scm (r-seriation): Update to 1.5.4.

Change-Id: I33dd04e9ef572e0731634149da3b0af0ee66929a
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 53de8edf15
gnu: r-timeseries: Update to 4032.108. 
* gnu/packages/cran.scm (r-timeseries): Update to 4032.108.

Change-Id: I9fd9ae02405dd4c25beb4da7876ac9ff1f13278c
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 249148231f
gnu: r-ggridges: Update to 0.5.5. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.5.

Change-Id: Ife748b75a0132b35020bfec0d58851e529aa2ebe
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 18c921aedb
gnu: r-ucminf: Update to 1.2.1. 
* gnu/packages/cran.scm (r-ucminf): Update to 1.2.1.

Change-Id: I8008943c653e2ce1c998353aeef383f5a79332b1
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 2a48f00a2d
gnu: r-recipes: Update to 1.0.9. 
* gnu/packages/cran.scm (r-recipes): Update to 1.0.9.

Change-Id: Ia73c9091f6d45f1690a4bfcae014e9571b317182
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus cb71656a2a
gnu: r-psych: Update to 2.3.12. 
* gnu/packages/cran.scm (r-psych): Update to 2.3.12.

Change-Id: I7bb3783e4df94655ab4d71bc6e14303691e39500
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 318dcc40e0
gnu: r-timedate: Update to 4032.109. 
* gnu/packages/cran.scm (r-timedate): Update to 4032.109.

Change-Id: Ib9718ee4e9c35182e892c23fa5b930ab71489acd
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 1cef2df3ad
gnu: r-bindrcpp: Update to 0.2.3. 
* gnu/packages/cran.scm (r-bindrcpp): Update to 0.2.3.

Change-Id: I6cde68e383bb776bfe18fe82cb3075a1ceb0c4f4
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 6ed18e6552
gnu: r-gensa: Update to 1.1.12. 
* gnu/packages/cran.scm (r-gensa): Update to 1.1.12.

Change-Id: I5be3cff03ad8edfc7f635a349f85570f9c4dfd2e
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus dcb8b43e41
gnu: r-maps: Update to 3.4.2. 
* gnu/packages/cran.scm (r-maps): Update to 3.4.2.

Change-Id: Id5063b752e807e6bbba40e52894c1a92917f8799
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus bbf076f5b2
gnu: r-servr: Update to 0.28. 
* gnu/packages/cran.scm (r-servr): Update to 0.28.

Change-Id: If6af9c2b2902039434ca858853de01bd59975ba5
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 27f965c7fa
gnu: r-rticles: Update to 0.26. 
* gnu/packages/cran.scm (r-rticles): Update to 0.26.

Change-Id: I5c2c25477990a87c3b1cec7f7830cddb862d2b6a
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 59970a9c57
gnu: r-datawizard: Update to 0.9.1. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.9.1.

Change-Id: I91de1685b889eb516204499c6e21c0fb1475ea13
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 6d564299c6
gnu: r-aod: Update to 1.3.3. 
* gnu/packages/cran.scm (r-aod): Update to 1.3.3.

Change-Id: Ifcf95c006c6adc76197cba6ab8dbb8234bf5c1cd
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 31ccfe9c91
import/cran: Add invalid package. 
* guix/import/cran.scm (invalid-packages): Add libR.

Change-Id: I1e06b44785051dfc4fb85ba06062aa8c8e003495
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 4ea4101d66
gnu: r-ggvenndiagram: Update to 1.4.9. 
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.4.9.
[propagated-inputs]: Add r-aplot, r-forcats, and r-tidyr; remove r-magrittr,
r-plotly, r-purrr, r-rvenn, r-sf, and r-yulab-utils.

Change-Id: I7e1f701e893aff8d75fa9de46d4f451cfa98f820
 2024-01-01 14:35:13 +01:00
Ricardo Wurmus 2b08c05bff
gnu: r-diversitree: Update to 0.10-0. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.10-0.
[native-inputs]: Remove gfortran.

Change-Id: Ie54ba8374d85b66d712d2c50d7ad1f05edc01b75
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 8c7904e424
gnu: r-radiant-data: Update to 1.6.3. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.6.3.
[source]: Do not delete help files, because they are now under CC-BY-SA.
[arguments]: Simplify by using minify-build-system.

Change-Id: Ic4a2bdd3a8df9f27d703505eaeba080e28982c80
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus ffa5bec664
gnu: r-shiny: Update to 1.8.0. 
* gnu/packages/cran.scm (r-shiny): Update to 1.8.0.
[arguments]: Do not use quasiquote for argument list.

Change-Id: Id36b3168a13a254e26cda30d7eaa45874d40c4e3
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 54c2ed9e2e
gnu: r-torch: Update to 0.12.0. 
* gnu/packages/cran.scm (r-torch): Update to 0.12.0.
[propagated-inputs]: Add r-jsonlite and r-safetensors.

Change-Id: I7d35b494640159975485846416e03630c7cd451f
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 5a5a5cf31d
gnu: liblantern: Update to 0.11.0-1.4d83bd0. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.11.0-1.4d83bd0.

Change-Id: I04ac3d64df8ec3b4ba628886640020a24361f4e3
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 1e5faccecd
gnu: python-pytorch-for-r-torch: Update to 2.0.1. 
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Update to 2.0.1.
* gnu/packages/patches/python-pytorch2-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I97551d543e50f6e511aa0529c097d156cf3f96de
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 6055bb3163
gnu: Add onnx-optimizer-for-torch2. 
* gnu/packages/machine-learning.scm (onnx-optimizer-for-torch2): New variable.

Change-Id: Icf48cba3f0a30f171b6f01cd033dd135a078ba1a
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 43c92f323e
gnu: Add onnx-for-torch2. 
* gnu/packages/machine-learning.scm (onnx-for-torch2): New variable.
* gnu/packages/patches/onnx-1.13.1-use-system-googletest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I8a46b9a8096a33bcf949bc4f5d497e22902ab301
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 7720430678
gnu: python-protobuf: Update to 3.20.2. 
* gnu/packages/protobuf.scm (python-protobuf): Update to 3.20.2.

Change-Id: Ic7a0f199f522ebf1e62e9179b4a7e4223594299c
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 745edcc4c0
gnu: Add r-safetensors. 
* gnu/packages/cran.scm (r-safetensors): New variable.

Change-Id: I40bcee87cdbba9776f3448a2567f94ebb1e652b9
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 5654f61541
gnu: Add xnnpack-for-torch2. 
* gnu/packages/machine-learning.scm (xnnpack-for-torch2): New variable.
* gnu/packages/patches/xnnpack-for-torch2-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I1c35f5fbd064fcc6732b924d7cafaa1a7d03ce04
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 71b8ed4a28
gnu: r-rmpi: Update to 0.7-2. 
* gnu/packages/cran.scm (r-rmpi): Update to 0.7-2.
[properties]: Specify updater-extra-inputs.
[arguments]: Use G-expression.

Change-Id: Ic15015bf181ae1e7689b7c81a3bf11258e2df946
 2024-01-01 14:35:12 +01:00
Ricardo Wurmus 4ee04aa632
gnu: r-littler: Update to 0.3.19. 
* gnu/packages/cran.scm (r-littler): Update to 0.3.19.
[properties]: Specify updater-extra-inputs.
[native-inputs]: Remove pkg-config.

Change-Id: Ic152e560fa9f5609aebc8c4a68a60265b7626bcb
 2024-01-01 14:35:12 +01:00
Julien Lepiller 9bfb7db8f6
gnu. josm. Update to 18907. 
* gnu/packages/geo.scm (josm): Update to 18907.

Change-Id: Ica61eabb49489bc5716b2b0bd029bbffcb7f84d3
 2024-01-01 10:37:03 +01:00
Julien Lepiller 8ba7a4a042
gnu: Add java-jakarta-annotations-api. 
* gnu/packages/java.scm (java-jakarta-annotations-api): New variable.

Change-Id: I374d1be6f1c509c9c6391e0551de5362eae13357
 2024-01-01 10:36:51 +01:00
Jean-Pierre De Jesus DIAZ 3bb1390171
gnu: Add neovim-coqtail. 
* gnu/packages/vim.scm (neovim-coqtail): New variable.

Change-Id: I431571925da02788410fc8bf3b1e1aea93bcb1bb
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:51:06 +02:00
Jean-Pierre De Jesus DIAZ 6abff4eafa
gnu: vim-coqtail: Allow using neovim for tests. 
* gnu/packages/vim.scm (vim-coqtail): Allow using neovim for tests.

Change-Id: I114b07dd9cf525a5571a37f51b2e6b2a57d5be46
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:49:17 +02:00
Jean-Pierre De Jesus DIAZ cb651129a3
gnu: vim-coqtail: Move vim-full to arguments. 
* gnu/packages/vim.scm (vim-coqtail)[arguments]: Set #:vim to use
vim-full.  Adjust custom 'check phase accordingly.
[native-inputs]: Remove vim-full.  Remove input labels.

Change-Id: I20cc1e0772727f8fc7db70b42151432fb6349fc7
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:46:44 +02:00
Jean-Pierre De Jesus DIAZ b34d0ceb85
gnu: Add neovim-vader. 
* gnu/packages/vim.scm (neovim-vader): New variable.

Change-Id: Ib507c2086c31a42088f3f433b57ac1e345e27113
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:45:51 +02:00
Jean-Pierre De Jesus DIAZ def924439d
gnu: vim-vader: Allow using neovim for tests. 
* gnu/packages/vim.scm (vim-vader): Allow using neovim for tests.

Change-Id: Id5b4423f24fdd42814b0a0e3fab801ec871611f7
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-01-01 10:44:20 +02:00
Efraim Flashner b20b624b02
gnu: gccgo-12: Fix building with 1 core. 
* gnu/packages/gcc.scm (make-gccgo)[arguments]: When building gccgo-12
or higher add a phase to build libbacktrace before libgo.

Change-Id: I9bb225b58ffa439f9461e4126f51ab453683efbe
 2024-01-01 08:35:53 +02:00
Florian Pelz 86b5fa1009
nls: Update translations. 
Change-Id: Ib407fd37896cc8653f5bfb1f76dba9dc775c8c10
 2024-01-01 00:45:47 +01:00
John Kehayias 19f5302d13
gnu: go-1.21: Update to 1.21.5. 
* gnu/packages/golang.scm (go-1.21): Update to 1.21.5.

Change-Id: Ie7d275e698c3884c93d7618d99859d6019fa8893
 2023-12-31 15:37:16 -05:00
John Kehayias c314115dd0
gnu: Add the Go standard library 1.21. 
* gnu/packages/golang.scm (go-std-1.21): New variable.

Co-authored-by: VÖRÖSKŐI András <voroskoi@gmail.com>
Change-Id: I8f26611fc5a9398d915e74d3e55a0f0310b27133
 2023-12-31 15:35:17 -05:00
Katherine Cox-Buday 37c33eb0d4
gnu: Add go-1.21. 
* gnu/packages/golang.scm (go-1.21): New variable.

Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
Change-Id: Ifa9fa61ed1ae49831621bdbabd530d29f6fa164a
 2023-12-31 15:24:18 -05:00
Timotej Lazar 1709f1bc92
gnu: jq: Update to 1.7.1 [security fixes]. 
Fixes CVE-2023-50246 and CVE-2023-50268.

* gnu/packages/web.scm (jq): Update to 1.7.1.

Change-Id: I21999732036c76faea711e0484fa8c0d75d8736f
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
 2023-12-31 15:10:27 -05:00
Efraim Flashner b7466215cd
gnu: go-github-com-stretchr-testify-bootstrap: Move to golang-check.scm 
* gnu/packages/golang.scm (go-github-com-stretchr-testify-bootstrap):
Move from here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: Iaa32e1c17a0e5a372613302e5e7fbf8de4d9572a
 2023-12-31 14:38:44 +02:00