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127269 commits

Author SHA1 Message Date
Ricardo Wurmus
b5527cc3c6
gnu: r-basilisk-utils: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.0.

Change-Id: I6113042a10770ee50e4ef997ee41fe109f917885
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
b2389dcfc1
gnu: r-dir-expiry: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.10.0.

Change-Id: I1081ec981a52a51a351d98e5079f8fd4bcc399d0
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
d5026a9e16
gnu: r-genetclassifier: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.42.0.

Change-Id: I323ca2d408c640b05c9d845570ee7af28616cce2
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
31fef7c331
gnu: r-minet: Update to 3.60.0.
* gnu/packages/bioconductor.scm (r-minet): Update to 3.60.0.

Change-Id: I4944d2e34aacc6d3ba8c5a2d2176ecf7b33ca6b8
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
ae127ddf0d
gnu: r-biobtreer: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.14.0.

Change-Id: Icf0458c6931237a405178361778a68c1a068337c
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
d40b4c5063
gnu: r-bgeedb: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.28.0.

Change-Id: I558f36065a9a751710843f21c6089231309705ca
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
38f88c84bf
gnu: r-bgeecall: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.18.1.

Change-Id: I5db747786c63f248dec01879e41a9837c94d6d6c
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
58661d1d54
gnu: r-beclear: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.18.0.

Change-Id: Ia52d2072c95c4ff68cabe22cd6f9da8f3f7833b3
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
6ddf9ed610
gnu: r-megadepth: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.12.0.

Change-Id: Ia8424334f3183442a8e7ffb21ba664b93f6342a3
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
9d0492c750
gnu: r-ballgown: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.34.0.

Change-Id: Ice69c2be8df89cb103e73de328ac6eb5919f0502
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
7e36e3ed55
gnu: r-guitar: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.18.0.

Change-Id: I2cd39de6e1fedbc3ed9a137373d6836e930296f2
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
0c881be497
gnu: r-chromstar: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.28.0.

Change-Id: I48a305a00b1fe7c89ca4f9700ebe6f65a6265080
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
d775b141cf
gnu: r-snpstats: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.52.0.

Change-Id: Ia770e5b05a7998d552b8ccb5386ddc1ad6722217
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
3b0e948493
gnu: r-snprelate: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.36.0.

Change-Id: I79ab3d448ab4b10a97d9c9d36b3b849a7c491508
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
bbe5704c17
gnu: r-snapcgh: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.72.0.

Change-Id: I7b2adbcb45461b5dc4f8248f92bfbda5f145d906
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
6b8c604e48
gnu: r-pathview: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.42.0.

Change-Id: I56a1425210667cc9b1ee41d20b9a71a749f6ff91
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
740e7ff51b
gnu: r-parody: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-parody): Update to 1.60.0.

Change-Id: I409588b32e582c0c6cd631d56a92ca430e2429d4
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
e9618ab210
gnu: r-ldblock: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.32.0.

Change-Id: I4183a3b48e050120ffb1e5cbba3894a5637ad1cc
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
9f139605ef
gnu: r-kegggraph: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.62.0.

Change-Id: Iadaa3580a5755ca5e611d980241191c4ae8b9452
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
b6288f949f
gnu: r-gwastools: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.48.0.
[native-inputs]: Add r-knitr.

Change-Id: I0544357b6f954e4812d1cdb983e12ed34f83b0d1
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
11300bd9ee
gnu: r-gwascat: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.34.0.

Change-Id: I3ae4066f1e36e30cecdf15cb9a5bfb469f0d6b49
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
3e5e4bf311
gnu: r-gviz: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.0.

Change-Id: Ib7b7f039dffd4f25731a4be3edfa6ecd293ceeff
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
f52a6fe0f1
gnu: r-ggbio: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.50.0.

Change-Id: I242df48dce620f327205d7f47bebfba0eae7d0c8
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
7af02a2c1d
gnu: r-erma: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.18.0.

Change-Id: I4f5993a1b80fc10b2eceb3177402c5b577a72855
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
bfd81d4846
gnu: r-catalyst: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.26.0.
[propagated-inputs]: Remove r-magrittr.

Change-Id: I2026d88617251a7dd5b87e57d7891852a0ff84cf
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
fd9c0e4167
gnu: r-msmstests: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.40.0.

Change-Id: Ia7f0d3e6684411cda2ab93c173b3195fa8a55348
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
bf8406c30a
gnu: r-msmseda: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.40.0.

Change-Id: Idc5314c04de4e03047d5fa9faac907a2ab8d527d
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
f2ab2bba68
gnu: r-biocio: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.12.0.

Change-Id: Ie6e5aee0c1a0c122f574d801e3268b460f89be2f
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
456beea62b
gnu: r-msfeatures: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.10.0.

Change-Id: I47be1fd6789a9cc386bc394e5fe0724156119ec9
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
0708efd724
gnu: r-mscoreutils: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.0.

Change-Id: Idbefebedc36bb19f5fe3549c9c3fc1e4056bf4fd
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
8fbc9cecda
gnu: r-delayedmatrixstats: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.24.0.
[propagated-inputs]: Remove r-matrixstats.

Change-Id: I212a19d1938a676f88c0371dc838bdfbea0ba814
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
372d1079d4
gnu: r-spatialexperiment: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.12.0.
[propagated-inputs]: Remove r-dropletutils.

Change-Id: I0df7aba48690c8472dee732b2aa21c9a83cb1e68
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
fb51c8df4f
gnu: r-sparsematrixstats: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.14.0.

Change-Id: Ia8812ca08d97737c1542afc80ce31ae29e673820
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
d797b2bb6f
gnu: r-scran: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.0.

Change-Id: Ic22fe78b4cd043f42b6e6cf8cf1d18772f7cfe63
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
051831dedc
gnu: r-scater: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.30.0.
[propagated-inputs]: Remove r-delayedmatrixstats and r-densvis; add r-matrixgenerics.

Change-Id: I7efb9c918fbc52bd0f3e184b928118cf59901d30
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
9cd2ed0580
gnu: r-scuttle: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.12.0.

Change-Id: Ia827e7c0cc34e84a82d844909f186eb8acecb604
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
71c77b8a95
gnu: r-singler: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-singler): Update to 2.4.0.

Change-Id: I1d3dd6343c3b604431684774075815d0454dbe6f
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
1e98a630ec
gnu: r-singlecellexperiment: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.24.0.

Change-Id: I22ffd8659aab63f3abd3ace3e874c8f83df2eeff
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
f936bf66fc
gnu: r-chromvar: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.24.0.

Change-Id: I90826fc26d2ca866e3502b275b92b77ea091745e
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
c5068f9911
gnu: r-motifmatchr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.24.0.

Change-Id: Ic656b84be047307728609f7a80b4077b1c638d4c
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
2458396f31
gnu: r-maftools: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.18.0.

Change-Id: I86ad6178d842ab3c93281bc4795a76abeb3c1e35
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
eff0371eed
gnu: r-tfbstools: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.40.0.

Change-Id: I5a3422fbd518ba681184e1ac36e3c1d95de07059
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
3e271e4d71
gnu: r-cner: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-cner): Update to 1.38.0.

Change-Id: I8907fcc16b67330e76c5d3bd050d594f07924e8a
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
d8aa22981d
gnu: r-beaddatapackr: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.54.0.

Change-Id: I231314cbe3d77920611221f8d234fffe123e7a26
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
74479eb3af
gnu: r-beadarraysnp: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-beadarraysnp): Update to 1.68.0.

Change-Id: I699cd1b68d682e2994b360e226c147674efe440d
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
87a27ee369
gnu: r-beadarray: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-beadarray): Update to 2.52.0.

Change-Id: Id9bf32ed5c1ce7ab77eda56e2c05dacc6ce987dd
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
0223873ff9
gnu: r-beachmat: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.18.0.
[propagated-inputs]: Add r-sparsearray.

Change-Id: I7ef74dcb5778d994f9a25616daa8c43ce97f2a40
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
d7ceedddff
gnu: r-rhdf5lib: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.0.

Change-Id: Iedc6746f91520826543dd3576591fb5d557bee8b
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
a9a7f0e6d5
gnu: r-hdf5array: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.30.0.

Change-Id: Id4e3654018ace7d0fae1d242a592a5bdb0064354
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
9940cd5a87
gnu: r-hitc: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.46.0.

Change-Id: I0afa4f9da8a94712fe851268ea94af25db058a8c
2023-11-03 22:49:26 +01:00