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Bruno Victal 0c53cbcc56
tests: gdm: Remove tmpfs related tests. 
This test never managed to reveal the problem described in [1] because
from gnu/system/vm.scm it is seen that our "/tmp" mount is filtered out and
replaced with a "/tmp" file-system that is mounted with (needed-for-boot? #t).
This last bit is crucial as the problem was caused by the user specified "/tmp"
file-system lacking this part which caused "/tmp" being mounted after
x11-socket-directory-service has run, effectively shadowing the directory.

[1]: <https://issues.guix.gnu.org/57589>

* gnu/tests/gdm.scm (%test-gdm-wayland-tmpfs): Delete variable.
(make-os): Remove tmpfs? argument.
(run-gdm-test): Remove tmpfs? argument. Add a small delay since
waiting for gdm.pid is not enough, causing the tests to fail sporadically.

Reviewed-by: Josselin Poiret <dev@jpoiret.xyz>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 16:53:28 -04:00
Bruno Victal b7506eb334
services: Add x11-socket-directory-service-type. 
The x11-socket-directory-service misuses activation-service-type
to create directories. This kind of usage is incorrect since
activation-service-type does not depend on file-systems, hence incompatible
with user defined /tmp mount.

This commit turns x11-socket-directory-service into a shepherd one-shot
service by defining a new x11-socket-directory-service-type.

* gnu/services/desktop.scm (x11-socket-directory-service-type): New variable.
(x11-socket-directory-service): Deprecate procedure.
(desktop-services-for-system): Use new service-type.
* gnu/tests/lightdm.scm: Ditto.

Reviewed-by: Josselin Poiret <dev@jpoiret.xyz>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 16:53:27 -04:00
Karl Hallsby 306bd7b8b9
doc: Document how to use specific package outputs in code. 
* doc/guix.texi (Packages with Multiple Outputs): Provide an example of
selecting a package's output in Scheme.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 16:19:12 -04:00
Maxim Cournoyer ad8abf18dd
gnu: manuskript: Add bash-minimal to inputs. 
* gnu/packages/text-editors.scm (manuskript) [inputs]: Add bash-minimal.
 2023-03-21 15:14:49 -04:00
Nicolas Goaziou 55f29c1cbe
gnu: manuskript: Update to 0.15.0. 
* gnu/packages/text-editors.scm (manuskript): Update to 0.15.0.
[inputs]: Add PYTHON-PYENCHANT.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 15:09:45 -04:00
jgart 4e9f914680
scripts: refresh: Add -T option. 
* doc/guix.texi (Invoking guix refresh): Document the -T option.
* guix/scripts/refresh.scm (%options): Add the -T flag.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:56:52 -04:00
Bruno Victal c88582a674
services: mcron: Add log-file and date-format fields. 
* doc/guix.texi (Scheduled Job Execution): Document it.
* gnu/services/mcron.scm (mcron-configuration)[log-file, date-format]: New field.
(mcron-shepherd-services): Add log-file and date-format support.
Use file-append instead of string-append.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:51:24 -04:00
Bruno Victal edb398449f
services: mcron: Use match-record. 
* gnu/services/mcron.scm (mcron-shepherd-services): Use match-record.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:31:22 -04:00
Bruno Victal 6f4fd8f5b8
services: mcron: Restyle mcron-configuration. 
* doc/guix.texi (Scheduled Job Execution): Sync doc with source.
* gnu/services/mcron.scm (mcron-configuration): Restyle.
[log-format]: Fix incorrectly formatted text.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:31:22 -04:00
Vagrant Cascadian 85df7a621c
gnu: diffoscope: Update to 239. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 239.
[native-inputs]: Replace poppler-next with poppler.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:31:22 -04:00
Hugo Buddelmeijer 2120c768f2
gnu: python-pypandoc: Upgrade to 1.7.5. 
The tests of python-pypandoc 1.6.5 fail; these are fixed in 1.7.5:
6670e906dc

The tests of later versions of python-pypandoc also fail though:
https://github.com/JessicaTegner/pypandoc/pull/327

Finally, python-pypandoc requires the pandoc data to be embeded in
the binary:
https://github.com/jgm/pandoc/blob/main/INSTALL.md#creating-a-relocatable-binary

* gnu/packages/python-xyz.scm (python-pypandoc): Upgrade to 1.7.5
* gnu/packages/haskel-xyz.scm (pandoc): Embed data files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:34 +01:00
Andy Tai 6a23ef814a
gnu: pocl: Update to 3.1 
* gnu/packages/opencl.scm (pocl): Update to 3.1
[native-inputs]: Add python-3
[arguments]: Update RPATH. Skip failed tests on aarch64

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:34 +01:00
Jack Hill 210c929c26
gnu: ssh-to-age: Update to 1.1.2. 
* gnu/packages/password-utils.scm (ssh-to-age): Update to 1.1.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:34 +01:00
Jack Hill 52577616c5
gnu: pass-age: Update to 1.7.4a1. 
* gnu/packages/password-utils.scm (pass-age): Update to 1.7.4a1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:33 +01:00
Jack Hill 82690c9b36
gnu: go-filippo-io-age: Update to 1.1.1. 
* gnu/packages/golang.scm (go-filippo-io-age): Update to 1.1.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:33 +01:00
Thomas Albers e4319d4ca6
gnu: Add dvisvgm. 
* gnu/packages/tex.scm (dvisvgm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:33 +01:00
Ludovic Courtès 4fbae445f7
gnu: fnlfmt: Update to 0.3.0. 
* gnu/packages/lua.scm (fnlfmt): Update to 0.3.0.
 2023-03-21 19:13:33 +01:00
Yovan Naumovski e3001aef29
gnu: fennel: Update to 1.3.0. 
* gnu/packages/lua.scm (fennel): Update to 1.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:33 +01:00
Ludovic Courtès 037f0611f4
gnu: vtk: Remove reference to GCC. 
This removes GCC from the closure of VTK, reducing its size by 200 MiB (17%).

* gnu/packages/image-processing.scm (vtk)[arguments]: Change to gexps.
Add #:phases.
(vtk-7)[arguments]: Turn #:configure-flags into a gexp.
 2023-03-21 19:13:33 +01:00
Ludovic Courtès eff652793f
gnu: vtk: Enable OpenMP, TBB, and Open MPI support. 
* gnu/packages/image-processing.scm (vtk)[arguments]: Pass options to
enable OpenMP, TBB, and MPI.
[inputs]: Add OPENMPI.
[propagated-inputs]: Add TBB.
 2023-03-21 19:13:32 +01:00
Josselin Poiret 02b1eb644a
gnu: gnulib: Depend on git-minimal/pinned. 
* gnu/packages/build-tools.scm (gnulib)[native-inputs]: Change git to
git-minimal/pinned.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-21 19:13:32 +01:00
Ludovic Courtès 0143e3f291
services: static-networking: 'eval-when' for code used at expansion-time. 
Reported by bjc on #guix.

* gnu/services/base.scm (valid-name, cidr->netmask): Wrap in 'eval-when'
since they are used by "compile-time procedures" (macros).
 2023-03-21 19:13:32 +01:00
Sergey Trofimov 4f63b4b86d
guix: Run check-synopsis-style with other local checks. 
* guix/lint.scm (%network-dependent-checkers): Move check-synopsis-style to...
(%local-checkers): ... here.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:06:47 -04:00
Sergey Trofimov d44970748f
gnu: fdroidcl: Update to 0.7.0. 
* gnu/packages/android.scm (fdroidcl): Update to 0.7.0.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:06:47 -04:00
Sergey Trofimov 441951bb03
gnu: Add go-github-com-schollz-progressbar-v3. 
* gnu/packages/golang.scm (go-github-com-schollz-progressbar-v3): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 14:06:39 -04:00
Sergey Trofimov 28418027e5
gnu: Add go-github-com-mitchellh-colorstring. 
* gnu/packages/golang.scm
(go-github-com-mitchellh-colorstring): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 13:48:44 -04:00
Antero Mejr 8b85aeaa08
gnu: Add samplebrain. 
* gnu/packages/music.scm (samplebrain): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 13:44:18 -04:00
Christopher Baines 43e4e52dfd
gnu: guix-build-coordinator: Update to 0-74.804165f. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-74.804165f.
 2023-03-21 16:33:00 +00:00
Guillaume Le Vaillant d377cfbd11
gnu: Update URLs of migrated repositories. 
* gnu/packages/lisp-xyz.scm (sbcl-bst, sbcl-cl-octet-streams, sbcl-lzlib,
  sbcl-simple-parallel-tasks, sbcl-cl-z85, sbcl-utm-ups, sbcl-mgrs,
  sbcl-maidenhead, sbcl-olc, sbcl-simple-neural-network, sbcl-zstd)[source,
  home-page]: Use codeberg URL instead of github one.
* gnu/packages/radio.scm (convert-samples)[source, home-page]: Likewise.
 2023-03-21 15:26:29 +01:00
Bruno Victal 9137df26bb
doc: Clarify special-files-service-type expected value. 
* doc/guix.texi (Services, Base Services): Clarify special-files-service-type
expected value.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 10:14:28 -04:00
Bruno Victal eba81e68ac
services: configuration: simplify alist? procedure. 
* gnu/services/configuration.scm (alist?): simplify procedure.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 09:41:42 -04:00
Sughosha a586c3996e
gnu: paulxstretch: Patch paths. 
* gnu/packages/music.scm (paulxstretch) [arguments]: Add patch-paths phase.
[inputs]: Add dconf, fontconfig and glib:bin.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-03-21 09:41:42 -04:00
Lars-Dominik Braun 38b64d47ed
gnu: Add python-brian2tools. 
* gnu/packages/machine-learning.scm (python-brian2tools): New variable.
 2023-03-21 13:58:47 +01:00
Lars-Dominik Braun 34f684371e
gnu: Add python-libneuroml. 
* gnu/packages/python-science.scm (python-libneuroml): New variable.
 2023-03-21 13:58:42 +01:00
Lars-Dominik Braun 9f882daf11
gnu: Add python-pylems. 
* gnu/packages/python-science.scm (python-pylems): New variable.
 2023-03-21 13:56:47 +01:00
Lars-Dominik Braun 4e5001f915
gnu: Add python-markdown-strings. 
* gnu/packages/python-xyz.scm (python-markdown-strings): New variable.
 2023-03-21 13:56:44 +01:00
Ricardo Wurmus 31cdb03704
gnu: r-tibble: Update to 3.2.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.2.1.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus 38fc19c4f5
gnu: r-keras: Update to 2.11.1. 
* gnu/packages/cran.scm (r-keras): Update to 2.11.1.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus 2200572e25
gnu: r-intervals: Update to 0.15.3. 
* gnu/packages/cran.scm (r-intervals): Update to 0.15.3.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus ab179ed1d8
gnu: r-maldiquant: Update to 1.22.1. 
* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.1.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus 2fbc674039
gnu: r-metafor: Update to 4.0-0. 
* gnu/packages/cran.scm (r-metafor): Update to 4.0-0.
[propagated-inputs]: Add r-numderiv.
[native-inputs]: Add r-r-rsp.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus 328cadff99
gnu: r-qgraph: Update to 1.9.4. 
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.4.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus 4127151a5c
gnu: r-ggfortify: Update to 0.4.16. 
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.16.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus 1cea095e55
gnu: r-sf: Update to 1.0-12. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-12.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus 395ef48520
gnu: r-glmmtmb: Update to 1.1.6. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.6.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus b98cd00976
gnu: r-fnn: Update to 1.1.3.2. 
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.2.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus f91a6fb4da
gnu: r-truncnorm: Update to 1.0-9. 
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-9.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus c23cc82f50
gnu: r-partykit: Update to 1.2-19. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-19.
 2023-03-21 12:31:34 +01:00
Ricardo Wurmus 766479ca25
gnu: r-nmf: Update to 0.26. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.26.
 2023-03-21 12:31:30 +01:00
Pierre Neidhardt 088a3d4c34
gnu: sbcl-history-tree: Update to 0.1.1. 
* gnu/packages/lisp-xyz.scm (sbcl-history-tree): Update to 0.1.1.
 2023-03-21 10:04:55 +01:00