Commit graph

52131 commits

Author SHA1 Message Date
Ricardo Wurmus
7557bd0cce
gnu: r-hdf5array: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.1.
[propagated-inputs]: Add r-matrix.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
1f5d262cfd
gnu: r-rhdf5lib: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.8.0.
[arguments]: Update patches.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
8804e4b48e
gnu: r-beachmat: Update to 2.2.1.
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.2.1.
[propagated-inputs]: Add r-matrix.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
376f2f35b6
gnu: r-singlecellexperiment: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.8.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
bf23416fe1
gnu: r-scater: Update to 1.14.5.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.14.5.
[propagated-inputs]: Remove r-dplyr.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
964634fa44
gnu: r-scran: Update to 1.14.5.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.14.5.
[propagated-inputs]: Remove r-dynamictreecut.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
c81ccd3076
gnu: r-delayedmatrixstats: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.8.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
758dfc61ee
gnu: r-mzid: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.24.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
dc9d4832b9
gnu: r-vsn: Update to 3.54.0.
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.54.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
af87ac3aa7
gnu: r-annotationfilter: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.10.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
43058ca656
gnu: r-chipseq: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.36.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
746e1f062e
gnu: r-copywriter: Update to 2.18.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.18.0.
2019-12-15 15:38:57 +01:00
Ricardo Wurmus
32f6059635
gnu: r-affy: Update to 1.64.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.64.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
51ca216bdf
gnu: r-affyio: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.56.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
065c305ca5
gnu: r-methylkit: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.12.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
2a6ce98b17
gnu: r-sva: Update to 3.34.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.34.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
d12328f9fe
gnu: r-protgenerics: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.18.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
3381dc4b5c
gnu: r-mzr: Update to 2.20.0.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.20.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
418d72142c
gnu: r-illuminaio: Update to 0.28.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.28.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
db85744ef3
gnu: r-geoquery: Update to 2.54.1.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.54.1.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
048a43d6a5
gnu: r-scone: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.10.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
2f223b2115
gnu: r-scdd: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.10.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
81a125cdb6
gnu: r-noiseq: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.30.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
9732e690a5
gnu: r-monocle: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.14.0.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
dc5237f85e
gnu: r-mast: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.12.0.
[propagated-inputs]: Remove r-blme.
2019-12-15 15:38:56 +01:00
Ricardo Wurmus
a5cc1f104b
gnu: r-icobra: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
0383bd05ce
gnu: r-ihw: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
153dc51bfe
gnu: r-lpsymphony: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.14.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
a9649c4138
gnu: r-ebseq: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.26.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
96030bf718
gnu: r-deds: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-deds): Update to 1.60.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
bba70cda0a
gnu: r-dnacopy: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.60.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
eb3fd3825c
gnu: r-copynumber: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.26.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
84825e5523
gnu: r-chipexoqual: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.10.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
2e17cbd733
gnu: r-savr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-savr): Update to 1.24.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
c88448d4b8
gnu: r-biocsingular: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
12e2aa96dc
gnu: r-biocneighbors: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.1.
[propagated-inputs]: Remove r-biocgenerics; add r-matrix.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
efd0934733
gnu: r-ruvseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.20.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
2d86dc2062
gnu: r-dnabarcodes: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.16.0.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
74bb4cdf57
gnu: r-inspect: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.0.
[propagated-inputs]: Remove r-preprocesscore; add r-genomeinfodb and r-kernsmooth.
2019-12-15 15:38:55 +01:00
Ricardo Wurmus
565bb84b31
gnu: r-plgem: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.58.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
9c071144a8
gnu: r-rots: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.14.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
728571fbc6
gnu: r-glimma: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.14.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
ab7f3cbbeb
gnu: r-goseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.38.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b2b5b03115
gnu: r-ctc: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.60.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b701ed6e83
gnu: r-genomicinteractions: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
bb841742dd
gnu: r-interactionset: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.14.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
595b6c9a89
gnu: r-riboseqr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.20.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
88af7049ea
gnu: r-riboprofiling: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.16.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b0897fbf95
gnu: r-chipcomp: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.16.0.
2019-12-15 15:38:54 +01:00
Ricardo Wurmus
d77228232d
gnu: r-bayseq: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.20.0.
2019-12-15 15:38:54 +01:00